View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15276_low_23 (Length: 266)

Name: NF15276_low_23
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15276_low_23
NF15276_low_23
[»] chr3 (10 HSPs)
chr3 (18-207)||(2748474-2748663)
chr3 (18-199)||(2856283-2856464)
chr3 (18-199)||(2839073-2839254)
chr3 (18-199)||(2768553-2768734)
chr3 (18-205)||(2818035-2818222)
chr3 (18-207)||(2806737-2806926)
chr3 (18-199)||(2789842-2790023)
chr3 (18-199)||(5412393-5412572)
chr3 (18-207)||(2796837-2797026)
chr3 (24-206)||(2758691-2758873)
[»] scaffold0691 (1 HSPs)
scaffold0691 (18-199)||(6625-6806)
[»] chr1 (1 HSPs)
chr1 (59-130)||(34975035-34975106)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 2748663 - 2748474
Alignment:
Q  18 ccatcgttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgt 117  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||    
T  2748663 ccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgt 2748564  T
Q  118 gtacacctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccatatcactct 207  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  2748563 gtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactct 2748474  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 2856283 - 2856464
Alignment:
Q  18 ccatcgttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgt 117  Q
    ||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||    
T  2856283 ccatcattgatgtctgcttcatccgcagcccttatgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgt 2856382  T
Q  118 gtacacctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccat 199  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  2856383 gtacacctctcaaaagatttgtttcttcttttaggaactggaacacttcccccagggcaaacaatactgcagtttctgccat 2856464  T

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Target: chr3; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 2839073 - 2839254
Alignment:
Q  18 ccatcgttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgt 117  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||| | || |||||||||||||| |||| |||||||||||    
T  2839073 ccatcgttgatgtctgcttcatccgcagcccttctgtctgcatctttgaggaagactagaatgatctcaagttcatctttgatatctgaaaaatctctgt 2839172  T
Q  118 gtacacctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccat 199  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||    
T  2839173 gtacacctctcagaagatttgtttcttcttttaggaatttgaacacttcccctagggcaaacaatactgcagtctctgccat 2839254  T

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Target: chr3; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 2768734 - 2768553
Alignment:
Q  18 ccatcgttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgt 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||    
T  2768734 ccatcgttggtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgt 2768635  T
Q  118 gtacacctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccat 199  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| |||| ||| || |||||  |||| ||||||||||||||    
T  2768634 gtacaccactcagcagatttgtttcttcttttaggaattggaaaacttgcccaagagcaaataatacagcagtttctgccat 2768553  T

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Target: chr3; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 2818222 - 2818035
Alignment:
Q  18 ccatcgttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgt 117  Q
    ||||| |||| ||| |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||    
T  2818222 ccatcattggcgtccgcttcatctgctgcccttctatctgcatctttgaggaagacttggatgctttctagttcatctttgatgtctgaaaaatctctgt 2818123  T
Q  118 gtacacctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccatatcact 205  Q
    |||||||||||||||| |||||||||||||||||||| || |||||||||  || |||  | |||||||||||||||||||| |||||    
T  2818122 gtacacctctcagaagctttgtttcttcttttaggaactgaaacacttccgacaaggctgatgatactgcagtttctgccatttcact 2818035  T

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Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 2806926 - 2806737
Alignment:
Q  18 ccatcgttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgt 117  Q
    ||||| || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||| ||| ||| |||    
T  2806926 ccatcatttgtgtctgcttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattctgtgt 2806827  T
Q  118 gtacacctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccatatcactct 207  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||||  | ||||||||  ||||||||||||||||||| |||||||    
T  2806826 gtacaccttttagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataatactgcagtttctgccatttcactct 2806737  T

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Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 2790023 - 2789842
Alignment:
Q  18 ccatcgttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgt 117  Q
    ||||| ||||||||||||||||| || || ||| | ||||||||||||||||||||||||||| | || ||||||||||||||||||  ||||||| |||    
T  2790023 ccatcattggtgtctgcttcatctgcagctcttatatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctaaaaaatctttgt 2789924  T
Q  118 gtacacctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccat 199  Q
    | ||||| ||||| |||||||||||||||||||||||||  ||||||||||||||| ||||  |||||||||||||||||||    
T  2789923 gcacaccactcaggagatttgtttcttcttttaggaattccaacacttcccccaggacaaataatactgcagtttctgccat 2789842  T

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Target: chr3; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 5412572 - 5412393
Alignment:
Q  18 ccatcgttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgt 117  Q
    ||||| |||| ||| |||||||| || |||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||  |||||    
T  5412572 ccatcattggcgtccgcttcatctgcagcccttttgtctgcatctttgaggaaggattgaatgatttctagttcatctttgatgtctgaaaaa--tctgt 5412475  T
Q  118 gtacacctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccat 199  Q
    ||| |||| ||||  ||||||||||||||| |||||||||||||| || ||| ||||||||| |||||||||||||||||||    
T  5412474 gtatacctttcagccgatttgtttcttcttctaggaattggaacagtttcccaagggcaaacaatactgcagtttctgccat 5412393  T

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Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 2797026 - 2796837
Alignment:
Q  18 ccatcgttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgt 117  Q
    ||||| |||||||| | |||||| || || ||| | ||||||||||||||||| ||||||||| | || ||||||||| ||||||||| ||||||| |||    
T  2797026 ccatcattggtgtcggtttcatctgcagctcttgtatctgcatctttgaggaaaacttgaatgctctcaagttcatctgtgatgtctgaaaaatctttgt 2796927  T
Q  118 gtacacctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccatatcactct 207  Q
    | ||||  ||||| |||||||||||||||||||||||||  ||||||| ||||||||||||  |||||| |||||||||||| |||||||    
T  2796926 gcacacgactcagcagatttgtttcttcttttaggaattcaaacactttccccagggcaaataatactgaagtttctgccatttcactct 2796837  T

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Target: chr3; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 2758873 - 2758691
Alignment:
Q  24 ttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgtgtacac 123  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||||||   |||||| |||||||||    
T  2758873 ttggtttctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacac 2758774  T
Q  124 ctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccatatcactc 206  Q
    |||| ||||||||||||| | | || || | |||||||||||| |||| |||  |   |||||||||||||||||| ||||||    
T  2758773 ctcttagaagatttgtttttaccttaagaagttggaacacttctcccaaggctgatattactgcagtttctgccatttcactc 2758691  T

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Target: scaffold0691 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 6625 - 6806
Alignment:
Q  18 ccatcgttggtgtctgcttcatccgctgcccttctgtctgcatctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgt 117  Q
    ||||| || |||||||||||||| || ||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||    
T  6625 ccatcattagtgtctgcttcatctgcagcctttctgtctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctgtaaaatctgtgt 6724  T
Q  118 gtacacctctcagaagatttgtttcttcttttaggaattggaacacttcccccagggcaaacgatactgcagtttctgccat 199  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||| |||||||||||||||||||    
T  6725 gtacacctctcagaagatttgtttctttttttaggaattggaacaattctccgagggcaaacaatactgcagtttctgccat 6806  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 34975106 - 34975035
Alignment:
Q  59 atctttgaggaagacttgaatgttttctagttcatctttgatgtctgtaaaatctctgtgtacacctctcag 130  Q
    ||||||||||||| |||||||| |||| ||||||| ||| ||||||| ||| ||| |||| |||||| ||||    
T  34975106 atctttgaggaaggcttgaatgctttcgagttcatatttaatgtctgcaaattctttgtgaacacctttcag 34975035  T

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