View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15276_low_25 (Length: 257)
Name: NF15276_low_25
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15276_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 31018572 - 31018350
Alignment:
| Q |
20 |
aactatgaaaaggcaagaaggtactagaaattatgtacttaatttctttctcacttcggnnnnnnnntcaaatgattttcttccnnnnnnnnttaaggtg |
119 |
Q |
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| T |
31018572 |
aactatggaaaggcaagaaggtactagaaattatgtacttaatttctttctcacttcggaaaaaaaatcaaatgattttcttccaaaaaaaattaaggtg |
31018473 |
T |
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| Q |
120 |
actttataaaggcttaaatatgaaaatggtttctgcaaagatcacaaattttagttttagtctttgtaaatattttaatccttatgaaatctattcatat |
219 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| |
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| T |
31018472 |
actttataaaggcttaaatatgaaaatggtttcttcaaagatcacaaattttagttttagtctttgtaaatattttagtcattgtgaaatctattcatat |
31018373 |
T |
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| Q |
220 |
tgaaattatttcatgattttagt |
242 |
Q |
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||||||| ||||| ||||||||| |
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| T |
31018372 |
tgaaattttttcacgattttagt |
31018350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 31028455 - 31028400
Alignment:
| Q |
20 |
aactatgaaaaggcaagaaggtactagaaattatgtacttaatttctttctcactt |
75 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
31028455 |
aactatgggaaggcaagaaggtactataaattatgtacttaatttctccctcactt |
31028400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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