View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15276_low_28 (Length: 250)
Name: NF15276_low_28
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15276_low_28 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 26279859 - 26279681
Alignment:
| Q |
69 |
actgtataaaaacaagatgagtcctaacataacaacaccgactccaaaacagcactacaagaattaatgtcgaaaatgagtgttgagtgagtgtggacag |
168 |
Q |
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| T |
26279859 |
actgtataaaaacaagatgagtcctaaca-----acacccactccaaaacagcactacaagaattaatgtcgaaaatgagtgttgagtgagtgtggacaa |
26279765 |
T |
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| Q |
169 |
cacttttctaaaaataattagg--tataggtataaatagggtcgttcctacgaatttggaggctcaactttataagtgaaaaga |
250 |
Q |
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| T |
26279764 |
cacttttctgaaaataattaggtatatatgtataaataggatcgttcctatgaatttggaggttcaactttgtaagtgaaaaga |
26279681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 26280105 - 26280070
Alignment:
| Q |
14 |
atataaccacctttgaaacaaacaaaaagggtttgt |
49 |
Q |
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| T |
26280105 |
atataaccacctttgaaacaaacaaaaagggtttgt |
26280070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 23744979 - 23744933
Alignment:
| Q |
204 |
agggtcgttcctacgaatttggaggctcaactttataagtgaaaaga |
250 |
Q |
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| T |
23744979 |
agggccgttcctacgaatttggaggctcagctctataagtgaaaaga |
23744933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 23859251 - 23859210
Alignment:
| Q |
209 |
cgttcctacgaatttggaggctcaactttataagtgaaaaga |
250 |
Q |
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| T |
23859251 |
cgttcctacgaatttggaggctcgactctgtaagtgaaaaga |
23859210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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