View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15276_low_6 (Length: 444)

Name: NF15276_low_6
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15276_low_6
NF15276_low_6
[»] chr5 (2 HSPs)
chr5 (12-429)||(39184736-39185155)
chr5 (17-154)||(8730292-8730427)
[»] chr1 (4 HSPs)
chr1 (16-165)||(42373538-42373686)
chr1 (16-297)||(17032737-17033026)
chr1 (14-169)||(19597952-19598108)
chr1 (99-167)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (56-173)||(16501182-16501300)
chr4 (99-167)||(30963879-30963947)
[»] chr2 (4 HSPs)
chr2 (48-174)||(31902910-31903036)
chr2 (48-203)||(39339357-39339512)
chr2 (17-154)||(25505480-25505615)
chr2 (46-159)||(22886011-22886124)
[»] chr8 (4 HSPs)
chr8 (20-172)||(9519052-9519205)
chr8 (105-167)||(34866640-34866702)
chr8 (80-159)||(10551752-10551832)
chr8 (99-167)||(34389590-34389658)
[»] chr7 (6 HSPs)
chr7 (16-167)||(37792747-37792899)
chr7 (105-167)||(38484991-38485053)
chr7 (48-203)||(47326396-47326551)
chr7 (105-174)||(3420242-3420311)
chr7 (56-159)||(12480298-12480402)
chr7 (99-167)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (35-131)||(25595121-25595217)
chr3 (48-169)||(17501759-17501880)
chr3 (16-159)||(5555991-5556136)
chr3 (58-156)||(1653452-1653550)
[»] chr6 (1 HSPs)
chr6 (56-167)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Original strand, 39184736 - 39185155
Alignment:
Q  12 cgaagaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaaga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39184736 cgaagaatatacccacaagccaacgatagagccaaaactacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatatataggaaga 39184835  T
Q  112 cgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtat 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39184836 cgaaacacaactacaaaacataggcaacgacgccagtttgaagcagaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacatat 39184935  T
Q  212 gtcgccggagtaaacaaccaaccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagtaccaaacctgaaag 311  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  39184936 gtcgccggagtaaacaaccaaccccatgaacctgcggaactgaccgaatggaagctgatctcagcaacaaaatcaccaaaaccagtaccgaacgtgaaag 39185035  T
Q  312 catgtgagacacccagagnnnnnnngtcgatatatacccaaaaccgc---caaaaaaccaagcaaccagcaccactacccaccgtgtatggccgtcggaa 408  Q
    || |||||||||||||||       ||||||||||||| |||||| |    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39185036 cacgtgagacacccagag-aaaaaagtcgatatatacctaaaaccacaaaaaaaaaaccaagcaaccagcaccactacccaccgtgtatggccgtcggaa 39185134  T
Q  409 agctggtgacaacaccaccaa 429  Q
    |||||||||||||||||||||    
T  39185135 agctggtgacaacaccaccaa 39185155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 8730427 - 8730292
Alignment:
Q  17 aatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaa 116  Q
    ||||||||||| | |||||||||||| || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | |||||||||||     
T  8730427 aatatacccaccaaccaacgatagagacagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaag 8730330  T
Q  117 cacaactacaaaacatgggcaacgacgccagtttgaag 154  Q
    |  ||| |||||||| ||||| |||||||||| |||||    
T  8730329 ccaaacaacaaaacacgggcagcgacgccagtctgaag 8730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 42373686 - 42373538
Alignment:
Q  16 gaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaa 115  Q
    |||||||||||||| |||| ||||||| ||||||||||| | |||||| ||||||||||||||||| ||| |||| | |||| ||| |||||||||||||    
T  42373686 gaatatacccacaa-ccaaagatagagacaaaactacgccgtcaaaccacctcaccaagaaaacaggcagtaacatagaacagatcgataggaagacgaa 42373588  T
Q  116 acacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaa 165  Q
    |||||||| ||||||| |||||||||| || |||||||||||||||||||    
T  42373587 acacaacttcaaaacacgggcaacgacaccggtttgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 17033026 - 17032737
Alignment:
Q  16 gaatatacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa---aacatatctataggaaga 111  Q
    ||||| ||||||||  || |||||||| ||||| |||| ||||||||||| |||||||||||||||  |||||||| ||    ||||||||| |||||||    
T  17033026 gaataaacccacaaatcagcgatagagacaaaaactacactgccaaaccgtctcaccaagaaaacaagcagcaacataatatcacatatctagaggaaga 17032927  T
Q  112 cgaaacacaactac-aaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgta 210  Q
    |||||  |||| || ||||||  || |  ||| || || |||||| |||||||||||   |||| | |||||  || |||||||||| |||| | || |     
T  17032926 cgaaatccaacaacaaaaacacaggtagtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgacaaggaggagacttc 17032827  T
Q  211 tgtcgccggagtaaac---aaccaaccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagt 297  Q
     |||| ||||||||||   ||||||  |||| |||||||  |||||||  |||||| ||| ||||||||||||| |  ||||||||||||    
T  17032826 cgtcgtcggagtaaacaaaaaccaagtccatgaacctgcaaaactgactgaatcgacgccaatctcagcaacaacacaaccaaaaccagt 17032737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 19598108 - 19597952
Alignment:
Q  14 aagaatatacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaaga 111  Q
    |||||||||| ||||| ||| ||| |||| ||||  ||||||  ||||||| |||| |||||||| ||| ||||||| |||| ||| | | | |||||||    
T  19598108 aagaatatactcacaaaccatcgaaagagacaaaggctacgcctccaaaccacctcgccaagaaa-caggcagcaacccaaacacaaaccaaaaggaaga 19598010  T
Q  112 cgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaaccta 169  Q
     ||||| |||| ||| |||| ||||||||||||| || ||||| |||| |||||||||    
T  19598009 tgaaacccaacaacagaacacgggcaacgacgccggtctgaagtggaaacacaaccta 19597952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  99 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 167  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 16501300 - 16501182
Alignment:
Q  56 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 154  Q
    |||||||||||||||||||||||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| ||||||||    
T  16501300 gccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaag 16501201  T
Q  155 cggaatcacaacctaaatc 173  Q
     |||||||||||| |||||    
T  16501200 tggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  99 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 167  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 31902910 - 31903036
Alignment:
Q  48 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 146  Q
    ||||||| ||||||  |||||| ||||||| || |||||||||| || | | ||||| ||||||||||||| |||| |||||||| ||||| |||||||     
T  31902910 actacgccgccaaatagcctcagcaagaaa-caaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccg 31903008  T
Q  147 gtttgaagcggaatcacaacctaaatca 174  Q
    ||||||||||||| ||||||||| ||||    
T  31903009 gtttgaagcggaaacacaacctagatca 31903036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 39339357 - 39339512
Alignment:
Q  48 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 146  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| |     
T  39339357 actacgccgccaaacatcctcaccaagaaa-cagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcg 39339455  T
Q  147 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 203  Q
    |||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  39339456 gtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggaga 39339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 25505480 - 25505615
Alignment:
Q  17 aatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaa 116  Q
    ||||||||||| | |||||||||||| || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | |||||||||||     
T  25505480 aatatacccaccaaccaacgatagagacagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaag 25505577  T
Q  117 cacaactacaaaacatgggcaacgacgccagtttgaag 154  Q
    |  ||| |||||||| ||||| |||||||||| |||||    
T  25505578 ccaaacaacaaaacacgggcagcgacgccagtctgaag 25505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 22886011 - 22886124
Alignment:
Q  46 aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacaca-aaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgc 144  Q
    |||| |||| |||||||| |||||||||| |||||  ||||||||||   ||||||| | ||||||| ||||| |||| |||||||| ||  | ||||||    
T  22886011 aaaccacgccgccaaaccacctcaccaag-aaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcgacgc 22886109  T
Q  145 cagtttgaagcggaa 159  Q
    |||| ||||||||||    
T  22886110 cagtctgaagcggaa 22886124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 9519205 - 9519052
Alignment:
Q  20 atacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaac 117  Q
    |||||||||| ||| |||||| | ||||| |||| | ||||| || |||||||| ||||||| ||||||| ||||| ||| ||||| || ||||||||||    
T  9519205 atacccacaaaccagcgatagggacaaaaactacaccgccaacccacctcaccatgaaaaca-acagcaatacaaacacaaatctagagaaagacgaaac 9519107  T
Q  118 acaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 172  Q
     |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519106 ccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  105 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 167  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  80 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 159  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  99 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 167  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 37792899 - 37792747
Alignment:
Q  16 gaatatacccacaagccaacgatagagcca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacg 113  Q
    ||||| |||||||| ||||||| |||| || ||||||||| ||||||||  |  ||||||||| |||||||||||||||| ||  ||| | || |||| |    
T  37792899 gaataaacccacaaaccaacgacagagacagaaactacgccgccaaaccagccaaccaagaaa-cagacagcaacacaaacacggatcaagagaaagatg 37792801  T
Q  114 aaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 167  Q
    |||| ||||  ||||||| || |||||||||| ||||||||||||| |||||||    
T  37792800 aaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacc 37792747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  105 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 167  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 47326396 - 47326551
Alignment:
Q  48 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 146  Q
    ||||||| |||||||  |||||||||| |||||  |||||||||||| |   ||||| ||||||| ||||  |||| |||||||| ||||| |||| ||     
T  47326396 actacgccgccaaacatcctcaccaag-aaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccg 47326494  T
Q  147 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 203  Q
     ||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  47326495 atttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  105 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 174  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 12480402 - 12480298
Alignment:
Q  56 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac-gaaacacaactacaaaacatgggcaacgacgccagtttgaa 153  Q
    |||||||||||||||||||||||||||  || ||||||| ||| ||| | |||||||| ||||  |||| |||||||| | ||| ||||||| |||||||    
T  12480402 gccaaaccgcctcaccaagaaaacagatggccacacaaatacagatc-agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaa 12480304  T
Q  154 gcggaa 159  Q
    | ||||    
T  12480303 gtggaa 12480298  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  99 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 167  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 25595121 - 25595217
Alignment:
Q  35 cgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacac-aaaacatatctataggaagacgaaacacaactacaaaaca 131  Q
    |||||||| | |||||||| |||||||||||||||||||| |||||  ||||||||| |||||| ||||| |||| ||||||||| ||| ||||||||    
T  25595121 cgatagagacgaaactacgttgccaaaccgcctcaccaag-aaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaaca 25595217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 17501759 - 17501880
Alignment:
Q  48 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 146  Q
    |||||||||||||||  ||||||||| |||| ||  ||||||||||| | | ||||| ||||||||||||   ||| |||||||| || ||| |||| ||    
T  17501759 actacgctgccaaacatcctcaccaa-aaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtca 17501857  T
Q  147 gtttgaagcggaatcacaaccta 169  Q
    ||||||||||||| |||||||||    
T  17501858 gtttgaagcggaaacacaaccta 17501880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 5556136 - 5555991
Alignment:
Q  16 gaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatcta-taggaagacg 113  Q
    |||||||||||||| ||| ||| |||| |||||| | || ||| ||||||| ||||| |||||||  |||||||||||| ||||||||| |  |||||||    
T  5556136 gaatatacccacaaaccagcgacagagacaaaacaatgcagcctaaccgccacaccatgaaaacaagcagcaacacaaacacatatctattttgaagacg 5556037  T
Q  114 aaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 159  Q
    || | |||| | | |||| ||||| ||||||| || ||||||||||    
T  5556036 aagcccaacaaaagaacacgggcagcgacgccggtctgaagcggaa 5555991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 1653452 - 1653550
Alignment:
Q  58 caaaccgcctcaccaagaaaacagacagcaacacaaaacatatctat--aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 155  Q
    |||||| |||||| |||||| ||| |||||||||||| ||||  |||  ||||||||||||  |||| |||||||| ||||| ||||||| |||||||||    
T  1653452 caaacctcctcacgaagaaa-caggcagcaacacaaa-cataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagc 1653549  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 12793664 - 12793553
Alignment:
Q  56 gccaaaccgcctcaccaagaaaacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 154  Q
    |||||||  ||||||||||||| ||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| ||||||||||||||||||||||    
T  12793664 gccaaacaccctcaccaagaaa-cagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaag 12793566  T
Q  155 cggaatcacaacc 167  Q
    || || |||||||    
T  12793565 cgaaaacacaacc 12793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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