View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15277_high_11 (Length: 260)
Name: NF15277_high_11
Description: NF15277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15277_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 40545041 - 40545289
Alignment:
| Q |
1 |
tcaactatattagtgtcatttgtttaaaattgtgtttaggtgttttcttgtgagtcaagtctttaaaattgcatttttggtcgtttaaattgattcaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40545041 |
tcaactatattagtgtcatttgtttaaaattgtgtttaggtgttttcttgtgagttaagtctttaaaattgcatttttggtcgtttaaattgattcaagc |
40545140 |
T |
|
| Q |
101 |
ttggcatgcattgtattattcaagcctttgggttgttatgatcacttcaagtaacacttaatacgattcaagaattatatgttttgtaacactttgatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40545141 |
ttggcatgcattgtattattcaagcctttgggttgttatgatcacttcaagtaacacttaatacgattcaagaattatatgtttcgtaacactttgatgt |
40545240 |
T |
|
| Q |
201 |
gattcaaaagttttgttaaaacccttgataagattcaaactctctctct |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40545241 |
gattcaaaagttttgttaaaacccttgataagattcaaactctctctct |
40545289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University