View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15277_high_2 (Length: 493)

Name: NF15277_high_2
Description: NF15277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15277_high_2
NF15277_high_2
[»] chr1 (28 HSPs)
chr1 (18-210)||(7982669-7982861)
chr1 (285-483)||(7982936-7983134)
chr1 (400-483)||(41364829-41364913)
chr1 (398-483)||(11437215-11437302)
chr1 (399-483)||(52827346-52827432)
chr1 (400-483)||(45148581-45148665)
chr1 (400-483)||(51684366-51684451)
chr1 (398-483)||(24422798-24422885)
chr1 (399-480)||(41366149-41366232)
chr1 (398-481)||(45149989-45150073)
chr1 (398-483)||(52828086-52828173)
chr1 (399-475)||(45157233-45157310)
chr1 (399-480)||(35594216-35594298)
chr1 (400-483)||(39699783-39699867)
chr1 (398-483)||(51685781-51685868)
chr1 (399-483)||(11436041-11436127)
chr1 (397-475)||(14999282-14999361)
chr1 (399-475)||(52274967-52275045)
chr1 (396-483)||(35067018-35067107)
chr1 (400-471)||(39222501-39222575)
chr1 (403-475)||(39153140-39153214)
chr1 (396-474)||(50680328-50680407)
chr1 (397-474)||(16290090-16290170)
chr1 (403-474)||(24426100-24426173)
chr1 (397-483)||(12389997-12390085)
chr1 (396-447)||(7674524-7674576)
chr1 (398-447)||(23980518-23980569)
chr1 (403-480)||(37526896-37526975)
[»] chr7 (21 HSPs)
chr7 (398-480)||(127335-127418)
chr7 (397-483)||(17782569-17782657)
chr7 (400-483)||(47525383-47525468)
chr7 (398-480)||(7501871-7501955)
chr7 (398-483)||(3227610-3227697)
chr7 (398-483)||(31949320-31949407)
chr7 (399-483)||(7500454-7500539)
chr7 (396-483)||(31949818-31949907)
chr7 (394-483)||(128617-128708)
chr7 (401-480)||(3227109-3227189)
chr7 (402-483)||(17781663-17781746)
chr7 (396-480)||(21505412-21505496)
chr7 (398-472)||(34174010-34174085)
chr7 (400-483)||(18371424-18371509)
chr7 (398-483)||(22630468-22630555)
chr7 (407-472)||(47524532-47524599)
chr7 (397-475)||(11658376-11658456)
chr7 (400-483)||(31659622-31659708)
chr7 (417-483)||(18372473-18372539)
chr7 (399-458)||(20163597-20163658)
chr7 (398-447)||(21508456-21508505)
[»] chr4 (34 HSPs)
chr4 (398-483)||(5526142-5526228)
chr4 (400-483)||(10471404-10471489)
chr4 (396-480)||(49308046-49308131)
chr4 (398-483)||(25685838-25685925)
chr4 (397-481)||(17382990-17383075)
chr4 (398-483)||(1835118-1835205)
chr4 (398-483)||(48780246-48780333)
chr4 (400-483)||(25684934-25685019)
chr4 (399-485)||(3928872-3928960)
chr4 (399-483)||(5525359-5525444)
chr4 (399-483)||(13386548-13386635)
chr4 (397-481)||(17388229-17388314)
chr4 (399-483)||(10470545-10470631)
chr4 (398-473)||(13386012-13386090)
chr4 (399-473)||(14868889-14868964)
chr4 (399-473)||(14876970-14877045)
chr4 (403-454)||(35934347-35934398)
chr4 (399-483)||(48781062-48781147)
chr4 (402-483)||(19750591-19750673)
chr4 (402-483)||(19789133-19789215)
chr4 (403-483)||(8155741-8155822)
chr4 (400-481)||(1834119-1834202)
chr4 (398-483)||(1963194-1963281)
chr4 (400-483)||(10447006-10447092)
chr4 (398-480)||(26421641-26421724)
chr4 (397-483)||(52491623-52491711)
chr4 (398-483)||(1290214-1290301)
chr4 (403-480)||(12129626-12129705)
chr4 (403-474)||(55602379-55602451)
chr4 (398-481)||(55603549-55603633)
chr4 (398-475)||(8757673-8757751)
chr4 (398-475)||(13509383-13509461)
chr4 (398-483)||(21177995-21178081)
chr4 (403-480)||(8758856-8758935)
[»] chr5 (20 HSPs)
chr5 (398-483)||(5777899-5777984)
chr5 (398-483)||(5778852-5778939)
chr5 (399-485)||(19752911-19752998)
chr5 (397-483)||(25055409-25055497)
chr5 (398-483)||(18486918-18487005)
chr5 (398-483)||(25523067-25523154)
chr5 (399-475)||(18485137-18485215)
chr5 (398-479)||(5730439-5730523)
chr5 (392-483)||(16650871-16650964)
chr5 (400-483)||(25056397-25056482)
chr5 (397-485)||(19754144-19754235)
chr5 (398-483)||(28538674-28538761)
chr5 (400-480)||(22940641-22940723)
chr5 (396-480)||(33160305-33160391)
chr5 (400-480)||(20214196-20214277)
chr5 (403-475)||(24332916-24332990)
chr5 (396-478)||(18154490-18154573)
chr5 (398-474)||(2685744-2685820)
chr5 (427-483)||(5730878-5730934)
chr5 (399-480)||(33158097-33158180)
[»] chr6 (20 HSPs)
chr6 (398-483)||(8659263-8659350)
chr6 (398-483)||(8821871-8821958)
chr6 (397-483)||(34834595-34834683)
chr6 (397-483)||(27322084-27322171)
chr6 (400-483)||(7314880-7314964)
chr6 (390-480)||(7316313-7316405)
chr6 (399-483)||(8660220-8660305)
chr6 (400-483)||(8822809-8822894)
chr6 (396-473)||(27318311-27318389)
chr6 (398-479)||(3722527-3722610)
chr6 (396-483)||(27437824-27437913)
chr6 (399-473)||(3721611-3721687)
chr6 (398-475)||(16704521-16704600)
chr6 (403-483)||(1829619-1829701)
chr6 (391-481)||(10784583-10784676)
chr6 (400-446)||(16703570-16703616)
chr6 (398-483)||(14822358-14822445)
chr6 (400-480)||(30495717-30495797)
chr6 (398-474)||(6842308-6842386)
chr6 (423-483)||(34830927-34830987)
[»] chr3 (43 HSPs)
chr3 (398-485)||(12700173-12700260)
chr3 (397-483)||(47610596-47610684)
chr3 (400-483)||(47614185-47614270)
chr3 (397-485)||(28262190-28262279)
chr3 (398-483)||(5029699-5029785)
chr3 (396-475)||(19984845-19984926)
chr3 (400-483)||(51469972-51470057)
chr3 (398-483)||(51470471-51470557)
chr3 (397-483)||(22776828-22776916)
chr3 (396-473)||(5001196-5001275)
chr3 (398-483)||(47609695-47609782)
chr3 (401-483)||(8456479-8456562)
chr3 (398-483)||(7267642-7267728)
chr3 (400-485)||(18456077-18456165)
chr3 (398-485)||(28263125-28263214)
chr3 (398-485)||(52281561-52281650)
chr3 (400-483)||(52840620-52840705)
chr3 (330-398)||(5030492-5030560)
chr3 (391-475)||(7268851-7268936)
chr3 (397-483)||(29931223-29931311)
chr3 (397-483)||(29980377-29980465)
chr3 (398-483)||(7758400-7758487)
chr3 (399-480)||(29932718-29932800)
chr3 (399-480)||(29981872-29981954)
chr3 (396-485)||(52276300-52276391)
chr3 (403-475)||(54987031-54987103)
chr3 (399-485)||(12703514-12703601)
chr3 (398-475)||(19986094-19986175)
chr3 (398-454)||(47615593-47615651)
chr3 (399-483)||(54540806-54540892)
chr3 (400-483)||(535798-535883)
chr3 (398-481)||(53614817-53614902)
chr3 (398-483)||(534497-534584)
chr3 (398-485)||(11671355-11671443)
chr3 (399-480)||(24516459-24516542)
chr3 (399-485)||(18442629-18442718)
chr3 (399-485)||(19487703-19487792)
chr3 (398-480)||(23769855-23769939)
chr3 (398-475)||(34019169-34019246)
chr3 (400-474)||(46719941-46720017)
chr3 (397-475)||(51038814-51038894)
chr3 (399-445)||(54539754-54539802)
chr3 (400-483)||(51037536-51037620)
[»] chr8 (30 HSPs)
chr8 (400-483)||(10006344-10006429)
chr8 (397-483)||(5513979-5514066)
chr8 (397-475)||(10007787-10007867)
chr8 (396-485)||(18979134-18979225)
chr8 (399-483)||(22221380-22221466)
chr8 (399-483)||(22227722-22227808)
chr8 (399-483)||(12353377-12353461)
chr8 (399-485)||(38980058-38980146)
chr8 (399-485)||(39011155-39011243)
chr8 (400-485)||(38974795-38974882)
chr8 (400-485)||(39005893-39005980)
chr8 (400-483)||(22220388-22220473)
chr8 (417-479)||(24488699-24488761)
chr8 (398-485)||(32968454-32968543)
chr8 (422-483)||(1824094-1824155)
chr8 (422-483)||(1858539-1858600)
chr8 (399-483)||(8388463-8388547)
chr8 (400-485)||(32973950-32974037)
chr8 (399-475)||(32207349-32207425)
chr8 (398-474)||(8389714-8389792)
chr8 (399-475)||(45114540-45114618)
chr8 (398-480)||(2379943-2380023)
chr8 (399-480)||(5003116-5003198)
chr8 (400-454)||(23170044-23170098)
chr8 (403-472)||(29968364-29968434)
chr8 (391-445)||(11288914-11288970)
chr8 (398-456)||(11456636-11456696)
chr8 (398-447)||(24123950-24123998)
chr8 (400-454)||(24483143-24483199)
chr8 (398-483)||(11282006-11282093)
[»] chr2 (24 HSPs)
chr2 (397-481)||(36449775-36449861)
chr2 (400-483)||(1034485-1034570)
chr2 (400-485)||(18299373-18299460)
chr2 (398-483)||(7899898-7899985)
chr2 (398-483)||(11938805-11938891)
chr2 (396-483)||(18797242-18797332)
chr2 (399-454)||(21837300-21837355)
chr2 (399-475)||(22848190-22848268)
chr2 (396-483)||(38840509-38840598)
chr2 (398-454)||(36450966-36451023)
chr2 (399-480)||(22587973-22588055)
chr2 (401-480)||(18300743-18300822)
chr2 (398-474)||(18906012-18906090)
chr2 (396-483)||(7898687-7898776)
chr2 (401-447)||(13030293-13030339)
chr2 (399-475)||(802615-802692)
chr2 (398-475)||(18904365-18904444)
chr2 (400-480)||(24476863-24476943)
chr2 (413-481)||(32739639-32739706)
chr2 (400-447)||(21837070-21837117)
chr2 (422-474)||(11258836-11258888)
chr2 (398-447)||(18868922-18868973)
chr2 (398-483)||(38839240-38839327)
chr2 (398-483)||(41879228-41879315)
[»] scaffold0186 (2 HSPs)
scaffold0186 (400-488)||(23081-23169)
scaffold0186 (398-480)||(23909-23993)
[»] scaffold0227 (1 HSPs)
scaffold0227 (400-485)||(133-220)
[»] scaffold0019 (2 HSPs)
scaffold0019 (400-485)||(60090-60177)
scaffold0019 (401-485)||(61473-61559)
[»] scaffold1303 (1 HSPs)
scaffold1303 (396-483)||(1435-1524)
[»] scaffold0302 (1 HSPs)
scaffold0302 (398-481)||(17468-17553)
[»] scaffold0003 (1 HSPs)
scaffold0003 (396-483)||(49449-49538)
[»] scaffold0093 (2 HSPs)
scaffold0093 (401-483)||(2481-2564)
scaffold0093 (401-483)||(7104-7187)
[»] scaffold2034 (1 HSPs)
scaffold2034 (400-475)||(233-310)
[»] scaffold0294 (1 HSPs)
scaffold0294 (398-480)||(5457-5541)
[»] scaffold0320 (1 HSPs)
scaffold0320 (398-475)||(19486-19565)
[»] scaffold0045 (1 HSPs)
scaffold0045 (400-474)||(49109-49185)
[»] scaffold0112 (1 HSPs)
scaffold0112 (400-483)||(37148-37232)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 8e-93; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 7982669 - 7982861
Alignment:
Q  18 ctattgacatgtttttaggagaaggtcggccatgtgtgcgtttgttgatttttcgcgggtatcacgttggatccgtcggaccatcttttataccccttta 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7982669 ctattgacatgtttttgggagaaggtcggccatgtgtgcgtttgttgatttttcgcgggtatcacgttggatccgtcggaccatcttttataccccttta 7982768  T
Q  118 ttcatagtgggactgtctttggttctgatgtcagttaaagagaaatataaagatgtattaattaacatgacaatttaaaatattttgattagt 210  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  7982769 ttcatagtgggactgtctttggttctaaggtcagttaaagagaaatataaagatgtattaattaacatgacaaattaaaatgttttgattagt 7982861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 285 - 483
Target Start/End: Original strand, 7982936 - 7983134
Alignment:
Q  285 ttatttatttacataagctaattttcataaggtaaaacaccatccagccatccaaacagggctttatgtctatttacctttttctctttaaacctcggcc 384  Q
    |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7982936 ttatttatttacataaactaattttcataaggtaaa-caccagccagccatccaaacagggctttatgtctatttacctttttctctttaaacctcagcc 7983034  T
Q  385 gttgtgaaaagaataggctaaagtgcacttttc-cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7983035 gttgtgaaaagaataggttaaagtgcacttttctcccgtaactttcaacaacttgcaattttggccccctatgtatcaaaaccacaattttgccccccta 7983134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 41364829 - 41364913
Alignment:
Q  400 ggctaaagtgcacttttc-cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||  || |||||||||||||| |||||||||    
T  41364829 ggctaaagtgcacttttctcccctaactttcaaaaacttgcaattttggccccctaaataccaaaaccacaatttagccccccta 41364913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 11437302 - 11437215
Alignment:
Q  398 taggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| || |||  ||||| ||||||||| |||||||    
T  11437302 taggctaaagtgcactttttcccccttaactttcaaaaacttgcaattttggtcccttaagtacaaaaactacaattttggcccccta 11437215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 52827346 - 52827432
Alignment:
Q  399 aggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||||||  |||||| ||| ||||||||||||||  ||||||||    
T  52827346 aggctaaagtgcacttttccccccctaactttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttaaccccccta 52827432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 45148581 - 45148665
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||| ||||  |||||||||| ||||||||||||||| |||||| |||  ||||| |||||||||||||||||    
T  45148581 ggctaaagtgcactttttcccgcttaactttcaaaaacttgcaattttggccccctaagta-aaaaactacaattttgccccccta 45148665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 51684366 - 51684451
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||   ||||||| || || |||||||||||| ||||||||||| ||||| ||||||||| |||||||    
T  51684366 ggctaaagtgcacttttccccccttaacttttaaaaagttgcaattttggccccctatgtataaaaactacaattttggcccccta 51684451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 24422798 - 24422885
Alignment:
Q  398 taggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||  |||| |||||||||| ||||||||||||||  |||||| |||  ||||| ||||||||| |||||||    
T  24422798 taggctaaagtgcacttttacccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttggcccccta 24422885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 41366232 - 41366149
Alignment:
Q  399 aggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||||||||||||||||||   |||||||||| ||| ||||||||| | ||| || |||||||||||||||||| ||||||    
T  41366232 aggctaaagtgcacttttcccctcctaactttcaaaaacatgcaattttagccccttaagtatcaaaaccacaatttagccccc 41366149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 481
Target Start/End: Complemental strand, 45150073 - 45149989
Alignment:
Q  398 taggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccc 481  Q
    |||| ||||||||||||||||||  |||||||||| ||||||||||||||| ||| || |||  ||||| |||||||||||||||    
T  45150073 taggttaaagtgcacttttcccccctaactttcaaaaacttgcaattttggccccttaagtacaaaaacaacaattttgcccccc 45149989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 52828173 - 52828086
Alignment:
Q  398 taggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||| |||||||||||||||||| |  || |||||| |||||||||||||||  ||||| ||| |||||||||||||| |||||||||    
T  52828173 taggttaaagtgcacttttccccctctaattttcaaaaacttgcaattttggctccctaagtaccaaaaccacaatttagccccccta 52828086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 45157310 - 45157233
Alignment:
Q  399 aggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||||||||||||||| ||||  ||| |||||| ||||||||||||||| ||||||||||  ||||| |||||||||    
T  45157310 aggctaaagtgcactttccccccctaagtttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttg 45157233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 35594216 - 35594298
Alignment:
Q  399 aggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||||||||||||||||  || |||||||||| ||||||||||||| | |||||| |||| ||||| ||||||||| ||||    
T  35594216 aggctaaagtgcacttttccacccctaactttcaaaaacttgcaatttt-gacccctaagtattaaaactacaattttgacccc 35594298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 39699867 - 39699783
Alignment:
Q  400 ggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||  |||||| |||   |||| ||||||||| |||||||    
T  39699867 ggctaaagtgcacttttcccccctaactttcaataacttgcaattttgaccccctaagtacagaaactacaattttggcccccta 39699783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 51685868 - 51685781
Alignment:
Q  398 taggctaaagtgcacttttcccc--gtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||   |||||||||| || |||| ||||||| || |||||||  ||||| ||||||||| |||||||    
T  51685868 taggctaaagtgcacttttccccctctaactttcaaaaagttgcgattttggccctctatgtacaaaaactacaattttgacccccta 51685781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 11436041 - 11436127
Alignment:
Q  399 aggctaaagtgcacttttcccc--gtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||||||| |   || |||| ||||| ||||||||| |||||||    
T  11436041 aggctaaagtgcacttttccccctttaactttcaaaaacttgcaattttggccttttaagtataaaaactacaattttggcccccta 11436127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 475
Target Start/End: Original strand, 14999282 - 14999361
Alignment:
Q  397 ataggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||||||||||| ||||||||||  |||||||||| ||||||||||||||  |||||| |||  ||||| |||||||||    
T  14999282 ataggctaaagtgtacttttcccccctaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttg 14999361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 52274967 - 52275045
Alignment:
Q  399 aggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||||||||||||||||  |||| |||||||||| ||||||||||||||  |||||| |||  ||||| |||||||||    
T  52274967 aggctaaagtgcacttttacccccctaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttg 52275045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 483
Target Start/End: Complemental strand, 35067107 - 35067018
Alignment:
Q  396 aataggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||  |||| ||| |||||| || |||| ||||||| |||||||| |  ||||| ||||||||| |||||||    
T  35067107 aataggctaaagtgcacttttccccccttaagtttcaaaaagttgcgattttggccccctatgaacaaaaactacaattttggcccccta 35067018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 471
Target Start/End: Complemental strand, 39222575 - 39222501
Alignment:
Q  400 ggctaaagtgcacttttccccg---taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaat 471  Q
    ||||||||||||||||| |||    |||||||||| ||||||||||||||| |||||| |||| ||||| |||||    
T  39222575 ggctaaagtgcacttttaccccctttaactttcaaaaacttgcaattttggccccctaagtataaaaactacaat 39222501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 39153214 - 39153140
Alignment:
Q  403 taaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||||||||||||  |||| ||| |||||| ||||||||||||||| ||| ||||||  ||||| |||||||||    
T  39153214 taaagtgcactttttcccccttaagtttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttg 39153140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 474
Target Start/End: Original strand, 50680328 - 50680407
Alignment:
Q  396 aataggctaaagtgcacttttccccgt-aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    |||||| ||||||||| |||||||| | ||||| ||| ||||||||||||||| |||||| |||| ||||| | ||||||    
T  50680328 aataggttaaagtgcatttttcccccttaacttccaaaaacttgcaattttggccccctaagtataaaaactataatttt 50680407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 474
Target Start/End: Original strand, 16290090 - 16290170
Alignment:
Q  397 ataggctaaagtgcacttttccccg---taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    ||||||||||||||| |||| |||    |||| ||||| || |||||||||||||||| ||||||| ||||| ||||||||    
T  16290090 ataggctaaagtgcattttttccccatctaacgttcaaaaagttgcaattttggtcccttatgtataaaaactacaatttt 16290170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 474
Target Start/End: Complemental strand, 24426173 - 24426100
Alignment:
Q  403 taaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    ||||||||||||| |||| |  ||||||||| ||||||||||||||| |||||| |||  ||||| ||||||||    
T  24426173 taaagtgcactttcccccctctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaatttt 24426100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 12390085 - 12389997
Alignment:
Q  397 ataggctaaagtgcacttttccc--cgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||| |||||||  | |||||||||| || |||| |||||| |||||||||||  ||||  | ||||||| |||||||    
T  12390085 ataggctaaagtgcatttttccctccttaactttcaaaaagttgcgattttgatcccctatgtacaaaaattataattttggcccccta 12389997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 447
Target Start/End: Original strand, 7674524 - 7674576
Alignment:
Q  396 aataggctaaagtgcactttt-ccccgtaactttcaacaacttgcaattttgg 447  Q
    ||||||||||||||| ||||| |||| ||||||| || |||||||||||||||    
T  7674524 aataggctaaagtgcccttttcccccctaacttttaaaaacttgcaattttgg 7674576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 23980569 - 23980518
Alignment:
Q  398 taggctaaagtgcacttttcccc--gtaactttcaacaacttgcaattttgg 447  Q
    |||||||||||||||||||||||   ||||||| || |||||||||||||||    
T  23980569 taggctaaagtgcacttttccccctctaactttaaaaaacttgcaattttgg 23980518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 37526975 - 37526896
Alignment:
Q  403 taaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||| ||||||||||   |||||||||| |||||||||||||||  |||||  |||  |||||||||||||| ||||    
T  37526975 taaagtgtacttttccccccttaactttcaaaaacttgcaattttggctccctaaatatagaaaccacaattttggcccc 37526896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 398 - 480
Target Start/End: Original strand, 127335 - 127418
Alignment:
Q  398 taggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||    
T  127335 taggctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggtcccctaagtaccaaaaccacaatttagccccc 127418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 17782657 - 17782569
Alignment:
Q  397 ataggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  17782657 ataggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagccccccta 17782569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 47525468 - 47525383
Alignment:
Q  400 ggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||||||| | |||||| |||||||||||||||||| |||||||||    
T  47525468 ggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttagccccctaagtatcaaaaccacaatttagccccccta 47525383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 480
Target Start/End: Complemental strand, 7501955 - 7501871
Alignment:
Q  398 taggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| |||||||||| ||||||||| ||||    
T  7501955 taggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggcccc 7501871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 3227697 - 3227610
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||   |||||||||| ||||||||||||||| |||||| ||| |||||||||||||| || ||||||    
T  3227697 taggctaaagtgcacttttccccccctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcaccccta 3227610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 31949320 - 31949407
Alignment:
Q  398 taggctaaagtgcacttttccc--cgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||  | ||| |||||| ||||||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  31949320 taggctaaagtgcacttttccctccctaattttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagccccccta 31949407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 7500454 - 7500539
Alignment:
Q  399 aggctaaagtgcacttttccccgt-aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||||| ||| ||| ||||  |||||||||||||| |||||||    
T  7500454 aggctaaagtgcacttttcccccttaactttcaaaaacttgcaattttgatcctctaagtatagaaaccacaattttggcccccta 7500539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 483
Target Start/End: Complemental strand, 31949907 - 31949818
Alignment:
Q  396 aataggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||| ||||||   |||||||||| ||||||||||||||| ||||||  || |||||||||||||| || ||||||    
T  31949907 aataggctaaagtgcactcttccccccctaactttcaaaaacttgcaattttggccccctaaataccaaaaccacaatttagcaccccta 31949818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 483
Target Start/End: Complemental strand, 128708 - 128617
Alignment:
Q  394 agaataggctaaagtgcacttttccc--cgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||| ||| |||||||||||||||||  | |||||||||| || |||||||||||  |||||| ||| |||||||||||||| |||||||||    
T  128708 agaaaaggttaaagtgcacttttcccaccataactttcaaaaatttgcaattttgaccccctaagtaccaaaaccacaatttagccccccta 128617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 480
Target Start/End: Original strand, 3227109 - 3227189
Alignment:
Q  401 gctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||||||||||| ||||  ||| |||||| ||||||||||||||| |||||| ||| |||||||||||||| ||||||    
T  3227109 gctaaagtgcactttccccccctaattttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagccccc 3227189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 17781663 - 17781746
Alignment:
Q  402 ctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||   |||||||||| ||||||||||||||  |||||| ||| ||||||||||||||  ||||||||    
T  17781663 ctaaagtgcacttttccccccctaactttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttaaccccccta 17781746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 480
Target Start/End: Original strand, 21505412 - 21505496
Alignment:
Q  396 aataggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||||||||||||||||||||| |||||||||| || |||| ||||||| |||| || ||  ||||| ||||||||| ||||    
T  21505412 aataggctaaagtgcacttttccccctaactttcaaaaagttgcgattttggcccccgatatacaaaaactacaattttgacccc 21505496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 34174085 - 34174010
Alignment:
Q  398 taggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatt 472  Q
    |||||||||||||||||||||||  || ||||||| | ||||||||||||| |||||| ||| |||||||||||||    
T  34174085 taggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggccccctaagtaccaaaaccacaatt 34174010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 18371424 - 18371509
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||   |||||||||| ||||||||||||||| ||| || |||  ||||| ||||||||| |||||||    
T  18371424 ggctaaagtgcacttttcccctcctaactttcaaaaacttgcaattttggccccttaagtacaaaaactacaattttggcccccta 18371509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 22630555 - 22630468
Alignment:
Q  398 taggctaaagtgcacttttccc--cgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||  | |||||||||| ||||||||||||||| ||||||  ||  ||||| ||||||||  |||||||    
T  22630555 taggctaaagtgcacttttccctccataactttcaaaaacttgcaattttggccccctaattacaaaaactacaattttagcccccta 22630468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 472
Target Start/End: Original strand, 47524532 - 47524599
Alignment:
Q  407 gtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatt 472  Q
    |||||||||||||| |  ||||||||| ||||||||||||||| |||||| ||| |||||||||||||    
T  47524532 gtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatt 47524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 475
Target Start/End: Original strand, 11658376 - 11658456
Alignment:
Q  397 ataggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||||||||| |||||||||  |||| |||||||||| ||| ||||||||| | ||||||||||  ||||| |||||||||    
T  11658376 ataggctaaattgcacttttccccccttaactttcaaaaacatgcaattttagccccctatgtacaaaaactacaattttg 11658456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 31659622 - 31659708
Alignment:
Q  400 ggctaaagtgcactttt---ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||   |||| |||||||||| ||||| ||||||||  |||||| |||  ||||| ||||||||| |||||||    
T  31659622 ggctaaagtgcacttttaccccccctaactttcaaaaacttacaattttgaccccctaagtacaaaaactacaattttggcccccta 31659708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 483
Target Start/End: Complemental strand, 18372539 - 18372473
Alignment:
Q  417 ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||| ||| |||||| ||||||||||||||| |||||| |||  ||||| ||||||||| |||||||    
T  18372539 ccccctaattttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttggcccccta 18372473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 458
Target Start/End: Complemental strand, 20163658 - 20163597
Alignment:
Q  399 aggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgta 458  Q
    |||||||||||||||| |||  || |||||||||| |||||||||||||||  |||||||||    
T  20163658 aggctaaagtgcacttctccacccctaactttcaaaaacttgcaattttggctccctatgta 20163597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 21508505 - 21508456
Alignment:
Q  398 taggctaaagtgcacttttccccgtaactttcaacaacttgcaattttgg 447  Q
    |||||||||||||| |||||||| |||||||||| || || |||||||||    
T  21508505 taggctaaagtgcatttttccccttaactttcaaaaagtttcaattttgg 21508456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 5526228 - 5526142
Alignment:
Q  398 taggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  5526228 taggctaaagtgcacttttcccctctaactttcaaaaacttgcaattttggccccctaagtaacaaaaccacaatttagccccccta 5526142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 10471489 - 10471404
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||   |||||||||| ||||||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  10471489 ggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagccccccta 10471404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 396 - 480
Target Start/End: Complemental strand, 49308131 - 49308046
Alignment:
Q  396 aataggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||||||||| |||||| |||  ||||| ||||||||||||||    
T  49308131 aataggctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttgccccc 49308046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 25685925 - 25685838
Alignment:
Q  398 taggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| ||| |||||||||||||| | |||||||    
T  25685925 taggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagacccccta 25685838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 397 - 481
Target Start/End: Original strand, 17382990 - 17383075
Alignment:
Q  397 ataggctaaagtgcacttttc-cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccc 481  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| || |||  ||||| ||||||||| |||||    
T  17382990 ataggctaaagtgcacttttctcccctaactttcaaaaacttgcaattttggtcccttaagtacaaaaactacaattttggccccc 17383075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 1835205 - 1835118
Alignment:
Q  398 taggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||  || |||||||||| ||||||||||||||  |||||| |||| ||||| ||||||||| |||||||    
T  1835205 taggctaaagtgcacttttccatccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgacccccta 1835118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 48780246 - 48780333
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||   ||||||| || ||||||||||||||  |||||| ||| |||||||||||||| |||||||||    
T  48780246 taggctaaagtgcacttttccccccctaacttttaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttagccccccta 48780333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 25684934 - 25685019
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||   |||||||||| ||||||||||||||  || ||| ||| |||||||||||||| |||||||||    
T  25684934 ggctaaagtgcacttttccccccctaactttcaaaaacttgcaattttgaccctctaagtaccaaaaccacaatttagccccccta 25685019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 3928960 - 3928872
Alignment:
Q  399 aggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    ||||||||||||||||||||||   |||||||||| |  |||| ||||||| ||||||||||| ||||||||||||||| ||| |||||    
T  3928960 aggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccctatgtatgaaaaccacaattttggccctctatg 3928872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 5525359 - 5525444
Alignment:
Q  399 aggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||| || ||||||||  |||||||||| ||||||||||||||  |||||| ||| |||||||||||||| |||||||||    
T  5525359 aggctaaagtacatttttcccccctaactttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttagccccccta 5525444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 13386635 - 13386548
Alignment:
Q  399 aggctaaagtgcactttt---ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||   |||| |||||||||| ||||||||||||||  ||| || ||| |||||||||||||| |||||||||    
T  13386635 aggctaaagtgcactttttccccccctaactttcaaaaacttgcaattttgaccccataagtaccaaaaccacaatttagccccccta 13386548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 481
Target Start/End: Complemental strand, 17388314 - 17388229
Alignment:
Q  397 ataggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccc 481  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| || |||   |||| ||||||||| |||||    
T  17388314 ataggctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggtcccttaagtacataaactacaattttggccccc 17388229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 10470545 - 10470631
Alignment:
Q  399 aggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||||||  || ||| ||| ||||| |||||||| |||||||||    
T  10470545 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttgaccctctaagtaccaaaatcacaatttagccccccta 10470631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 473
Target Start/End: Original strand, 13386012 - 13386090
Alignment:
Q  398 taggctaaagtgcacttttccccgt--aactttcaacaa-cttgcaattttggtcccctatgtatcaaaaccacaattt 473  Q
    ||||||||||||||||||||||| |  ||||||||| || ||||||||||||| |||||| ||| ||||||||||||||    
T  13386012 taggctaaagtgcacttttccccctctaactttcaaaaaacttgcaattttggccccctaagtaccaaaaccacaattt 13386090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 14868889 - 14868964
Alignment:
Q  399 aggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattt 473  Q
    ||||||||||||||||||||||  || ||||||| | ||||||||||||| || ||| ||||||||||||||||||    
T  14868889 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggcccgctaagtatcaaaaccacaattt 14868964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 14877045 - 14876970
Alignment:
Q  399 aggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattt 473  Q
    ||||||||||||||||||||||  || ||||||| | ||||||||||||| || ||| ||||||||||||||||||    
T  14877045 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggcccgctaagtatcaaaaccacaattt 14876970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 35934347 - 35934398
Alignment:
Q  403 taaagtgcacttttccccgtaactttcaacaacttgcaattttggtccccta 454  Q
    |||||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  35934347 taaagtgcacttttccccctaactttcaaaaacttgtaattttggtccccta 35934398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 48781147 - 48781062
Alignment:
Q  399 aggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||| |  ||||||||| || ||||||||||||| ||||| |||  ||||||||||||| |||||||||    
T  48781147 aggctaaagtgcacttttccccctctaactttcaaaaatttgcaattttggt-ccctaagtactaaaaccacaatttagccccccta 48781062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 19750673 - 19750591
Alignment:
Q  402 ctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||  ||||||| || ||||||||||||||| |||||| |||  ||||| |||||||| ||||||||    
T  19750673 ctaaagtgcacttttcccccctaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattttaccccccta 19750591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 19789133 - 19789215
Alignment:
Q  402 ctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||  ||||||| || ||||||||||||||| |||||| |||  ||||| |||||||| ||||||||    
T  19789133 ctaaagtgcacttttcccccctaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattttaccccccta 19789215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 483
Target Start/End: Original strand, 8155741 - 8155822
Alignment:
Q  403 taaagtgcacttttccccgtaactttcaacaacttgcaatttt-ggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||| |||||||||| ||||||||||||| | ||||||| ||   ||||| ||||||||| |||||||    
T  8155741 taaagtgcacttttccccctaactttcaaaaacttgcaattttagctcccctaagttcaaaaactacaattttggcccccta 8155822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 1834119 - 1834202
Alignment:
Q  400 ggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccc 481  Q
    ||||||||||||||||||||| |  |||||| || ||||| ||||||||  ||||||||||| ||||| ||||||||| |||||    
T  1834119 ggctaaagtgcacttttccccctctaactttaaaaaacttacaattttgaccccctatgtataaaaactacaattttggccccc 1834202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 1963194 - 1963281
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||   |||||||||| || |||||||||||| | ||||||||  ||||| ||||||||  |||||||    
T  1963194 taggctaaagtgcacttttccccccttaactttcaaaaagttgcaattttggcctcctatgtacaaaaactacaattttagcccccta 1963281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 10447006 - 10447092
Alignment:
Q  400 ggctaaagtgcacttttccccgt---aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||| |   || |||||| || |||||||||| | ||||||||||  |||||||||||||| ||||||||    
T  10447006 ggctaaagtgcacttttccccctcttaagtttcaaaaagttgcaattttagccccctatgtacaaaaaccacaattttaccccccta 10447092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 480
Target Start/End: Complemental strand, 26421724 - 26421641
Alignment:
Q  398 taggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||  | |||| |||  ||||| ||||||||| ||||    
T  26421724 taggctaaagtgcacttttcccctctaactttcaaaaacttgcaattttgacctcctaagtacaaaaactacaattttgacccc 26421641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 52491711 - 52491623
Alignment:
Q  397 ataggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||| ||||||||  || |||||||||| |||||||||||||||||| |||  ||   |||| ||||||||| |||||||    
T  52491711 ataggctaaagtgtacttttccacccttaactttcaaaaacttgcaattttggtcctctaaatacagaaactacaattttggcccccta 52491623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 1290301 - 1290214
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||   |||||||||| | ||||||||||||| || ||| |||  ||||| ||||||||  |||||||    
T  1290301 taggctaaagtgcacttttccccccttaactttcaaaatcttgcaattttggccctctaagtacaaaaactacaattttagcccccta 1290214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 480
Target Start/End: Original strand, 12129626 - 12129705
Alignment:
Q  403 taaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||||||||||||||   |||||||||| ||||||||||||||| ||| || |||  ||||| ||||||||| ||||    
T  12129626 taaagtgcacttttcccctcttaactttcaaaaacttgcaattttggccccgtaagtacaaaaactacaattttgacccc 12129705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 474
Target Start/End: Original strand, 55602379 - 55602451
Alignment:
Q  403 taaagtgcacttttccccgt-aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    ||||||||| |||||||| | ||||||||| ||||||||||||| |||| |||| ||| ||||| ||||||||    
T  55602379 taaagtgcatttttcccctttaactttcaaaaacttgcaattttagtcctctatatataaaaactacaatttt 55602451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 481
Target Start/End: Complemental strand, 55603633 - 55603549
Alignment:
Q  398 taggctaaagtgcactttt-ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccc 481  Q
    |||| |||||||||||||| |||| |||||||||| |||||||||||||  |||||| ||||  ||||| || |||||| |||||    
T  55603633 taggttaaagtgcactttttccccttaactttcaaaaacttgcaattttaatcccctgtgtacaaaaactactattttggccccc 55603549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 475
Target Start/End: Original strand, 8757673 - 8757751
Alignment:
Q  398 taggctaaagtgcac-ttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||||||||||||| |||||||| |||||||||| ||||| ||||||| | |||||| |||   |||| |||||||||    
T  8757673 taggctaaagtgcactttttccccttaactttcaaaaacttacaattttagccccctaagtacagaaactacaattttg 8757751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 13509461 - 13509383
Alignment:
Q  398 taggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||||||||||| ||||||||||  ||||||| || || |||||||||||| |||| | |||| ||||| |||||||||    
T  13509461 taggctaaagtgtacttttcccccctaacttttaaaaaattgcaattttggccccccaagtatgaaaactacaattttg 13509383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 21177995 - 21178081
Alignment:
Q  398 taggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||| ||||| ||||  |||||||||  || ||||||||||| ||||||||| |  ||||| ||||||||| |||||||    
T  21177995 taggctaaagtgtactttccccccctaactttcataaagttgcaattttgatcccctatgaacaaaaactacaattttgacccccta 21178081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 8758935 - 8758856
Alignment:
Q  403 taaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||| |||||||||||||   |||||||||| ||||||||||||||| |||||| |||   |||| ||||||||| ||||    
T  8758935 taaaatgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacagaaactacaattttggcccc 8758856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 5777899 - 5777984
Alignment:
Q  398 taggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||||||  |||||| ||| |||||||||||||| |||||||||    
T  5777899 taggctaaagtgcactttcccccctaactttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttagccccccta 5777984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 5778939 - 5778852
Alignment:
Q  398 taggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||||| | |||||| ||| |||||||||||||| |||||||||    
T  5778939 taggctaaagtgcacttttccccctctaactttcaaaaacttgcaatttttgccccctaagtaccaaaaccacaatttagccccccta 5778852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 485
Target Start/End: Original strand, 19752911 - 19752998
Alignment:
Q  399 aggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||| |||||| |||  ||||| ||||||||| |||||||||    
T  19752911 aggctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttggccccctatg 19752998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 397 - 483
Target Start/End: Original strand, 25055409 - 25055497
Alignment:
Q  397 ataggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||| |  |||||| |||  |||||||||||| |||||||||||| ||||| ||||||||| |||||||    
T  25055409 ataggctaaagtgcacttttccccctctaactttaaacttcttgcaattttgatcccctatgtataaaaactacaattttggcccccta 25055497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 18487005 - 18486918
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||| ||||   |||||||||| ||||||||||||||| |||||| ||||  |||||||||||||| |||||||    
T  18487005 taggctaaagtgcactttcccccccttaactttcaaaaacttgcaattttggccccctaagtatagaaaccacaattttggcccccta 18486918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 25523067 - 25523154
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||   |||||||||| ||||||||||||| | |||||| |||  ||||| ||||||||| |||||||    
T  25523067 taggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttgacccccta 25523154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 18485137 - 18485215
Alignment:
Q  399 aggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||||||||||||||||| ||| |  |||||| || ||||||||||||||| |||||| |||||||||| |||||||||    
T  18485137 aggctaaagtgcactttttcccctctaactttaaaaaacttgcaattttggccccctaagtatcaaaacaacaattttg 18485215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 479
Target Start/End: Original strand, 5730439 - 5730523
Alignment:
Q  398 taggctaaagtgcacttttccccg---taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccc 479  Q
    |||||||||||||||||||||||    |||||||||| |||||||||||||||   |||| ||| |||||||||||||| |||||    
T  5730439 taggctaaagtgcacttttcccccccttaactttcaaaaacttgcaattttggcttcctaagtaccaaaaccacaatttagcccc 5730523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 392 - 483
Target Start/End: Complemental strand, 16650964 - 16650871
Alignment:
Q  392 aaagaataggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||| |||||||||||||||||||||  || ||||||| || ||||||||||||||  |||||| |||| ||||| ||||||||  |||||||    
T  16650964 aaagactaggctaaagtgcacttttccacccttaacttttaaaaacttgcaattttgaccccctaagtataaaaactacaattttagcccccta 16650871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 25056482 - 25056397
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||| |   |||||||||| ||||||||||||||  |||||| |||| ||||| ||||||||| |||||||    
T  25056482 ggctaaagtgcacttttccactcctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgacccccta 25056397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 485
Target Start/End: Complemental strand, 19754235 - 19754144
Alignment:
Q  397 ataggctaaagtgcactttt---ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    ||||||||||||||| ||||   |||| |||||||||| ||||||||||||||| ||||||  ||  ||||| ||||||||| |||||||||    
T  19754235 ataggctaaagtgcatttttttcccccctaactttcaaaaacttgcaattttggccccctaaatacaaaaactacaattttggccccctatg 19754144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 28538674 - 28538761
Alignment:
Q  398 taggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||  ||||||||||||| ||||||||||||||  ||| || |||  ||||| ||||||||  |||||||    
T  28538674 taggctaaagtgcacttttccacccgtaactttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttagcccccta 28538761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 22940723 - 22940641
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||||||||||||||||||   |||||||||| ||||||||||||||| |||||| |||  ||||  ||||||||| ||||    
T  22940723 ggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaaattacaattttgacccc 22940641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 480
Target Start/End: Complemental strand, 33160391 - 33160305
Alignment:
Q  396 aataggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||||||||||||||||||  |||| ||| |||||| ||||||||||||| | |||||| ||||  |||| ||||||||| ||||    
T  33160391 aataggctaaagtgcacttttccccccttaattttcaaaaacttgcaattttagccccctaagtatagaaactacaattttgacccc 33160305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 480
Target Start/End: Original strand, 20214196 - 20214277
Alignment:
Q  400 ggctaaagtgcacttttccccgt-aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||||| |  | |||||||  ||||| ||||||||| ||||    
T  20214196 ggctaaagtgcacttttcccccttaactttcaaaaacttgcaattttagcactctatgtacaaaaactacaattttggcccc 20214277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 24332916 - 24332990
Alignment:
Q  403 taaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||||||||||||  |||| ||| |||||| ||||||||||||||| ||| ||||||  ||||| |||||||||    
T  24332916 taaagtgcactttttcccccttaagtttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttg 24332990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 478
Target Start/End: Original strand, 18154490 - 18154573
Alignment:
Q  396 aataggctaaagtgcac--ttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccc 478  Q
    |||||||||||||| ||  |||||||| |||||||||| ||||| ||||||| | |||||| |||  ||||| ||||||||||||    
T  18154490 aataggctaaagtgaacttttttccccttaactttcaaaaacttacaatttt-gacccctaagtacaaaaactacaattttgccc 18154573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 2685744 - 2685820
Alignment:
Q  398 taggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    |||| |||| |||||| |||||| ||| |||||| |||||  ||||||||||||||| |||  ||||| ||||||||    
T  2685744 taggataaaatgcactattccccctaattttcaaaaacttataattttggtcccctaagtacaaaaactacaatttt 2685820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 5730934 - 5730878
Alignment:
Q  427 ttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||| ||||| ||||||||| |||||| ||| |||||||||||||| | |||||||    
T  5730934 ttcaaaaacttccaattttggccccctaagtaccaaaaccacaatttagtcccccta 5730878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 33158097 - 33158180
Alignment:
Q  399 aggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||||||||| ||||  |||| |||||||||| ||||||||||||||   ||||| |||  ||||| ||||||||| ||||    
T  33158097 aggctaaagtgcatttttttccccctaactttcaaaaacttgcaattttgacaccctaagtacaaaaactacaattttgacccc 33158180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 8659263 - 8659350
Alignment:
Q  398 taggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  8659263 taggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagccccccta 8659350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 8821871 - 8821958
Alignment:
Q  398 taggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  8821871 taggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagccccccta 8821958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 34834683 - 34834595
Alignment:
Q  397 ataggctaaagtgcacttttccc--cgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||| |||||||||||||||||  | |||||||||| |||||||||||||| || |||| |||||||||||||||||| |||||||||    
T  34834683 ataggttaaagtgcacttttccctccctaactttcaaaaacttgcaattttgatctcctaagtatcaaaaccacaatttagccccccta 34834595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 27322171 - 27322084
Alignment:
Q  397 ataggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||||  || ||||||| | ||||||||||||| |||||| ||| ||||||||||||||| ||||||||    
T  27322171 ataggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggccccctaagtaccaaaaccacaattttcccccccta 27322084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 7314880 - 7314964
Alignment:
Q  400 ggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| |||||||||| ||||||||| |||||||    
T  7314880 ggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttgg-cccctaagtatcaaaacaacaattttgacccccta 7314964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 480
Target Start/End: Complemental strand, 7316405 - 7316313
Alignment:
Q  390 gaaaagaataggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||| |||||||||||||||||||||||||   |||||||||| ||||||||||||||| ||||||  |||  |||||||||||||| ||||    
T  7316405 gaaaaaaataggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaaatattgaaaccacaattttggcccc 7316313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 8660305 - 8660220
Alignment:
Q  399 aggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||||||  |||||| ||| |||||||||||||| |||||||||    
T  8660305 aggctaaagtgcacttttcccctcctaactttcaaaaacttgcaattttga-cccctaagtaccaaaaccacaatttagccccccta 8660220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 8822894 - 8822809
Alignment:
Q  400 ggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||  |  ||||||||| ||||||||||||||  |||||| ||| |||||||||||||| |||||||||    
T  8822894 ggctaaagtgcacttttccctctttaactttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttagccccccta 8822809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 473
Target Start/End: Original strand, 27318311 - 27318389
Alignment:
Q  396 aataggctaaagtgcac-ttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattt 473  Q
    ||||||||||||||||| |||||||| || ||||||| | ||||||||||||| |||||| ||| ||||||||||||||    
T  27318311 aataggctaaagtgcaccttttccccctatctttcaaaatcttgcaattttggccccctaagtaccaaaaccacaattt 27318389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 479
Target Start/End: Complemental strand, 3722610 - 3722527
Alignment:
Q  398 taggctaaagtgcacttttccc--cgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccc 479  Q
    ||||||||||||||||||||||  | |||||||||| ||||||||||||||  || ||| ||| |||||||||||||| |||||    
T  3722610 taggctaaagtgcacttttccctccctaactttcaaaaacttgcaattttgaccctctaagtaccaaaaccacaatttagcccc 3722527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 396 - 483
Target Start/End: Original strand, 27437824 - 27437913
Alignment:
Q  396 aataggctaaagtgcacttttc--cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||  ||| ||||||| || || |||||||||||| |||||||  || ||||| ||||||||| |||||||    
T  27437824 aataggctaaagtgcacttttctccccttaactttaaaaaagttgcaattttggccccctataaataaaaactacaattttgacccccta 27437913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 3721611 - 3721687
Alignment:
Q  399 aggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattt 473  Q
    |||||||||||||||||||||| |  ||||||||| ||||||||||||||  |||||| ||| |||||||| |||||    
T  3721611 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttgaccccctaagtaccaaaaccataattt 3721687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 16704600 - 16704521
Alignment:
Q  398 taggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||||||||||||||||||||  || |||||||||| ||||||||||||||  |||||| |||  ||||| |||||||||    
T  16704600 taggctaaagtgcacttttcctcccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttg 16704521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 483
Target Start/End: Complemental strand, 1829701 - 1829619
Alignment:
Q  403 taaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||  |||| ||||||| || ||||||||||||||  |||||| |||| ||||| ||||||||| |||||||    
T  1829701 taaagtgcacttttttccccctaacttttaaaaacttgcaattttgaccccctaagtataaaaactacaattttggcccccta 1829619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 481
Target Start/End: Original strand, 10784583 - 10784676
Alignment:
Q  391 aaaagaataggctaaagtgcacttttc---cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccc 481  Q
    |||| ||||||||||||||||||||||   ||| ||||||| || |||||||||||||   |||||| |||| ||||| ||||||||| |||||    
T  10784583 aaaaaaataggctaaagtgcacttttccctcccttaacttttaaaaacttgcaattttaaccccctaagtataaaaactacaattttggccccc 10784676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 16703570 - 16703616
Alignment:
Q  400 ggctaaagtgcacttttccccgtaactttcaacaacttgcaattttg 446  Q
    ||||||||||||||||||||| || ||||||| ||||||||||||||    
T  16703570 ggctaaagtgcacttttccccctatctttcaaaaacttgcaattttg 16703616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 14822358 - 14822445
Alignment:
Q  398 taggctaaagtgcacttttc--cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||| ||||||||||||  ||| ||| |||||| ||||||||||||||| ||| || ||||  |||| ||||||||| |||||||    
T  14822358 taggctagagtgcacttttcaccccttaattttcaaaaacttgcaattttggccccataagtatagaaactacaattttggcccccta 14822445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 30495797 - 30495717
Alignment:
Q  400 ggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||||||||||||| ||| |||||||||| || |||| |||||  |||||||||||  ||||  ||||||||| ||||    
T  30495797 ggctaaagtgcactttttcccctaactttcaaaaagttgcgattttaatcccctatgtacaaaaataacaattttggcccc 30495717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 6842386 - 6842308
Alignment:
Q  398 taggctaaagtgcacttttcccc--gtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    |||||||||||||||||||||||   ||| |||||| || |||||||||||| |||||||||   ||||| ||||||||    
T  6842386 taggctaaagtgcacttttccccctctaagtttcaaaaagttgcaattttggccccctatgtgcaaaaactacaatttt 6842308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 483
Target Start/End: Original strand, 34830927 - 34830987
Alignment:
Q  423 aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||| || |||||  ||||| |||||| ||| |||||||||||||| |||||||||    
T  34830927 aactttcaaaaatttgcatatttggccccctaagtaccaaaaccacaatttagccccccta 34830987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 398 - 485
Target Start/End: Original strand, 12700173 - 12700260
Alignment:
Q  398 taggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||||||| |||||| |||  ||||| ||||||||| |||||||||    
T  12700173 taggctaaagtgcactttcccccctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttgaccccctatg 12700260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 47610684 - 47610596
Alignment:
Q  397 ataggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||| |||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  47610684 ataggttaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagccccccta 47610596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 47614185 - 47614270
Alignment:
Q  400 ggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||| ||| |  ||||||||| ||||||||||||||| |||||| |||||||||| ||||||||| |||||||    
T  47614185 ggctaaagtgcactttttcccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggcccccta 47614270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 28262190 - 28262279
Alignment:
Q  397 ataggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    ||||||||||||||||||||||||  |||||||||| |  |||| ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  28262190 ataggctaaagtgcacttttcccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatg 28262279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 5029785 - 5029699
Alignment:
Q  398 taggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||  || ||||||| | ||||||||||||| | |||| ||| ||||||||||||||| ||||||||    
T  5029785 taggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggcctcctaagtaccaaaaccacaatttttccccccta 5029699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 475
Target Start/End: Original strand, 19984845 - 19984926
Alignment:
Q  396 aataggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||||||||||||||||||||||||   ||| |||||| ||||||||||||||| ||||||||||  ||||| |||||||||    
T  19984845 aataggctaaagtgcacttttccccccctaagtttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttg 19984926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 51469972 - 51470057
Alignment:
Q  400 ggctaaagtgcacttttccc--cgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||  | ||| |||||| ||||||||||||||| |||||| ||| ||||||||||||||  ||||||||    
T  51469972 ggctaaagtgcacttttccctccctaattttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttaaccccccta 51470057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 51470557 - 51470471
Alignment:
Q  398 taggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||| ||||||  |||||||||| |||||||||||| | ||||||| ||| |||||||||||||| || ||||||    
T  51470557 taggctaaagtgcactcttcccccctaactttcaaaaacttgcaatttagatcccctaagtaccaaaaccacaatttagcaccccta 51470471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 22776916 - 22776828
Alignment:
Q  397 ataggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||  || |||||||||  || |||||||||||| ||||||||||  ||||| ||||||||| |||||||    
T  22776916 ataggctaaagtgcacttttccacccctaactttcagaaagttgcaattttggccccctatgtacaaaaactacaattttggcccccta 22776828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 473
Target Start/End: Original strand, 5001196 - 5001275
Alignment:
Q  396 aataggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattt 473  Q
    |||||||||||||||||||||||  || || ||||||| | ||||||||||||| |||||| ||| ||||||||||||||    
T  5001196 aataggctaaagtgcacttttcctcccctatctttcaaaatcttgcaattttggccccctaagtaccaaaaccacaattt 5001275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 47609695 - 47609782
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||| |||||||||||||   |||||||||| ||||||||||||||  |||||| ||| ||||||||||||||  ||||||||    
T  47609695 taggctaaaatgcacttttccccccctaactttcaaaaacttgcaattttgaccccctaagtaccaaaaccacaatttaaccccccta 47609782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 483
Target Start/End: Original strand, 8456479 - 8456562
Alignment:
Q  401 gctaaagtgcactttt-ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||  ||  ||||| ||||||||| |||||||    
T  8456479 gctaaagtgcactttttccccctaattttcaaaaacttgcaattttggtcccctaaatacaaaaactacaattttggcccccta 8456562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 7267642 - 7267728
Alignment:
Q  398 taggctaaagtgcacttttccccgt-aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||| |||||||||||||||||| | ||||||||| ||||||||||||||| |||||| |||   |||| ||||||||| |||||||    
T  7267642 taggttaaagtgcacttttcccccttaactttcaaaaacttgcaattttggccccctaagtacagaaactacaattttggcccccta 7267728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 18456165 - 18456077
Alignment:
Q  400 ggctaaagtgcacttttccccg---taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||||||    |||||||||| |  |||| ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  18456165 ggctaaagtgcacttttcccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatg 18456077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 28263214 - 28263125
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||||||||   ||||||| || |  |||| ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  28263214 taggctaaagtgcacttttccccccctaacttttaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatg 28263125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 52281650 - 52281561
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||||||||   || ||||||| |  |||| ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  52281650 taggctaaagtgcacttttccccccctatctttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatg 52281561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 52840705 - 52840620
Alignment:
Q  400 ggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||| |||||||  || |||||||||| |||||||||||||||  |||||  ||||||||| ||||||||| |||||||    
T  52840705 ggctaaagtgcccttttcctcccctaactttcaaaaacttgcaattttggctccctaattatcaaaacaacaattttgtcccccta 52840620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 5030492 - 5030560
Alignment:
Q  330 agccatccaaacagggctttatgtctattt-acctttttctctttaaacctcggccgttgtgaaaagaat 398  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||  |||||||  ||||||||    
T  5030492 agccatccaaac-gggctttatgtctattttacctttttctctttaaacctgagccgttgccaaaagaat 5030560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 475
Target Start/End: Complemental strand, 7268936 - 7268851
Alignment:
Q  391 aaaagaataggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||| |||||| ||||||||||||||||||  |||||||||| ||||||||||||||| | |||| ||||  |||| |||||||||    
T  7268936 aaaaaaataggttaaagtgcacttttcccccctaactttcaaaaacttgcaattttggcctcctaagtatagaaactacaattttg 7268851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 483
Target Start/End: Original strand, 29931223 - 29931311
Alignment:
Q  397 ataggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||  || |||||||||| ||||||||||||| | ||||||  ||  ||||| ||||||||| |||||||    
T  29931223 ataggctaaagtgcacttttccacccctaactttcaaaaacttgcaatttttgccccctaaatacaaaaactacaattttggcccccta 29931311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 483
Target Start/End: Original strand, 29980377 - 29980465
Alignment:
Q  397 ataggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||  || |||||||||| ||||||||||||| | ||||||  ||  ||||| ||||||||| |||||||    
T  29980377 ataggctaaagtgcacttttccacccctaactttcaaaaacttgcaatttttgccccctaaatacaaaaactacaattttggcccccta 29980465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 7758400 - 7758487
Alignment:
Q  398 taggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||  |||| |||||||||| ||||||||||||||  |||||| |||  ||||| ||||||||  |||||||    
T  7758400 taggctaaagtgcactttttcccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaatttttgcccccta 7758487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 29932800 - 29932718
Alignment:
Q  399 aggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| |||  ||||| ||||||||| ||||    
T  29932800 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttgg-cccctaagtacaaaaactacaattttgacccc 29932718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 29981954 - 29981872
Alignment:
Q  399 aggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| |||  ||||| ||||||||| ||||    
T  29981954 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttgg-cccctaagtacaaaaactacaattttgacccc 29981872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 485
Target Start/End: Original strand, 52276300 - 52276391
Alignment:
Q  396 aataggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||||||  |||| || ||||||| |  |||| ||||||| |||| |||||| ||||| ||||||||| |||||||||    
T  52276300 aataggctaaagtgcacttttccccccctatctttcaaaacgttgcgattttggccccccatgtatgaaaacaacaattttggccccctatg 52276391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 54987103 - 54987031
Alignment:
Q  403 taaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||||||||||||||||| ||| |||||| || |||| ||||| ||||||||||||| ||||| | |||||||    
T  54987103 taaagtgcacttttccccctaagtttcaaaaagttgcgattttagtcccctatgtataaaaactataattttg 54987031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 12703601 - 12703514
Alignment:
Q  399 aggctaaagtgcac-ttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||| |||||||  |||||||||| || ||| |||||||| |||||| |||  ||||| ||||||||| |||||||||    
T  12703601 aggctaaagtgcactttttccctctaactttcaaaaatttgtaattttggccccctaagtacaaaaactacaattttggccccctatg 12703514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 19986175 - 19986094
Alignment:
Q  398 taggctaaagtgcacttttccc--cgtaactttcaacaacttgcaattttggtcc--cctatgtatcaaaaccacaattttg 475  Q
    ||||||||||||||||||||||  | ||| |||||| ||||||||||||||| ||  ||||||||| ||||| |||||||||    
T  19986175 taggctaaagtgcacttttcccctcttaagtttcaaaaacttgcaattttggcccctcctatgtataaaaactacaattttg 19986094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 454
Target Start/End: Complemental strand, 47615651 - 47615593
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtccccta 454  Q
    |||||||||||||||||||||||   |||||||||| ||||||||||||||| ||||||    
T  47615651 taggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggcccccta 47615593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 54540892 - 54540806
Alignment:
Q  399 aggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||||||  ||| || |||  ||||| ||||||||| |||||||    
T  54540892 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttggcccccta 54540806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 535883 - 535798
Alignment:
Q  400 ggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||| ||||||||  || |||||||||| ||||||||||||||||||| || |||| ||||| | ||||||  |||||||    
T  535883 ggctaaagtgtacttttccacccctaactttcaaaaacttgcaattttggtcccttaagtattaaaactataattttcacccccta 535798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 481
Target Start/End: Original strand, 53614817 - 53614902
Alignment:
Q  398 taggctaaagtgcacttttc--cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccc 481  Q
    |||||||||||||| |||||  ||| |||||||||| ||||| ||||||| |||| |||| ||| ||||| ||||||||| |||||    
T  53614817 taggctaaagtgcatttttcctcccttaactttcaaaaacttacaattttagtcctctatatataaaaactacaattttggccccc 53614902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 534497 - 534584
Alignment:
Q  398 taggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||| ||| |  |||| |||| ||||||||||||||  | ||||||||  ||||| ||||||||| |||||||    
T  534497 taggctaaagtgcactttttcccctctaactctcaaaaacttgcaattttgacctcctatgtacaaaaactacaattttggcccccta 534584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 11671443 - 11671355
Alignment:
Q  398 taggctaaagtgcacttttccc-cgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    ||||||||||||||||||| || | |||||||||| ||||||||||||| | ||||||  ||| ||||| |||  |||| |||||||||    
T  11671443 taggctaaagtgcactttttccgcctaactttcaaaaacttgcaattttagccccctaaatataaaaactacagatttgaccccctatg 11671355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 24516459 - 24516542
Alignment:
Q  399 aggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||| |||||||||||||  |||| ||||||| || |||||||||||||||  ||||| |||| ||||| ||||||||| ||||    
T  24516459 aggccaaagtgcactttttcccccctaactttaaaaaacttgcaattttggcaccctaagtataaaaactacaattttggcccc 24516542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 485
Target Start/End: Original strand, 18442629 - 18442718
Alignment:
Q  399 aggctaaagtgcacttt---tccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||    |||| |||||||||| |  |||| ||||||| |||| |||||| ||||| ||||||||| |||||||||    
T  18442629 aggctaaagtgcactttccccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaactacaattttggccccctatg 18442718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 485
Target Start/End: Original strand, 19487703 - 19487792
Alignment:
Q  399 aggctaaagtgcacttt---tccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||    |||| |||||||||| |  |||| ||||||| |||| |||||| ||||| ||||||||| |||||||||    
T  19487703 aggctaaagtgcactttccccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaactacaattttggccccctatg 19487792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 480
Target Start/End: Original strand, 23769855 - 23769939
Alignment:
Q  398 taggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||| ||||||||||||||  || ||||||||||||| ||||||||||  ||| ||||||   ||||| ||||||||| ||||    
T  23769855 taggctgaagtgcacttttccacccttaactttcaacaagttgcaattttaatcctctatgtgcaaaaactacaattttgacccc 23769939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 34019246 - 34019169
Alignment:
Q  398 taggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||| |||||| || |||||||| |||||||||| ||||||||||||||  |||||| |||  || || |||||||||    
T  34019246 tagggtaaagtacatttttccccttaactttcaaaaacttgcaattttgaccccctaggtacaaacactacaattttg 34019169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 46719941 - 46720017
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    |||||||||||| ||||||||   ||||||| || || |||| ||||||| ||||||||||| ||||| ||||||||    
T  46719941 ggctaaagtgcatttttccccccttaacttttaaaaagttgcgattttggccccctatgtataaaaactacaatttt 46720017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 475
Target Start/End: Complemental strand, 51038894 - 51038814
Alignment:
Q  397 ataggctaaagtgcacttttc--cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||||||||||||||||||||  ||| ||||||| || || |||||||||||  |||||||| |  ||||| |||||||||    
T  51038894 ataggctaaagtgcacttttccacccttaacttttaaaaagttgcaattttgaccccctatgaacaaaaactacaattttg 51038814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 54539754 - 54539802
Alignment:
Q  399 aggctaaagtgcacttttc--cccgtaactttcaacaacttgcaatttt 445  Q
    |||||||||||||||||||  ||| |||||||||| |||||||||||||    
T  54539754 aggctaaagtgcacttttccacccttaactttcaaaaacttgcaatttt 54539802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 51037536 - 51037620
Alignment:
Q  400 ggctaaagtgcacttttc-cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||| ||| |||||||||| || |||||||||||  || ||||| |  ||||| ||||||||  |||||||    
T  51037536 ggctaaagtgcacttttctcccttaactttcaaaaagttgcaattttgaccctctatgaacaaaaactacaattttagcccccta 51037620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 10006344 - 10006429
Alignment:
Q  400 ggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||||||||| |||||| |||||||||| ||||||||| |||||||    
T  10006344 ggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggcccccta 10006429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 397 - 483
Target Start/End: Original strand, 5513979 - 5514066
Alignment:
Q  397 ataggctaaagtgcactttt-ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||| |||| |||||||||| ||||| ||||||||| |||||| |||  ||||| |||||||||||||||||    
T  5513979 ataggctaaagtgcacttttaccccctaactttcaaaaacttccaattttggccccctaagtacaaaaactacaattttgccccccta 5514066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 397 - 475
Target Start/End: Complemental strand, 10007867 - 10007787
Alignment:
Q  397 ataggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||||||||||||||||||||||   |||||||||| ||||||||||||||| |||||| ||||  ||||||||||||||    
T  10007867 ataggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtatagaaaccacaattttg 10007787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 485
Target Start/End: Complemental strand, 18979225 - 18979134
Alignment:
Q  396 aataggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||| ||||||||||||||||||||   |||||||||||||||||||||||||| ||||||  ||| ||||| ||||||||| |||| ||||    
T  18979225 aatacgctaaagtgcacttttccccccctaactttcaacaacttgcaattttggccccctaaatataaaaactacaattttggccccttatg 18979134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 22221466 - 22221380
Alignment:
Q  399 aggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||  || |||||||||| ||||||||||||||  |||||| |||| ||||| ||||||||| |||||||    
T  22221466 aggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgacccccta 22221380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 22227808 - 22227722
Alignment:
Q  399 aggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||  || |||||||||| ||||||||||||||  |||||| |||| ||||| ||||||||| |||||||    
T  22227808 aggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgacccccta 22227722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 12353461 - 12353377
Alignment:
Q  399 aggctaaagtgcacttttccccgt-aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||| ||| |||||| | ||||||| |||||||    
T  12353461 aggctaaagtgcacttttcccccttaactttcaaaaacttgcaattttggccccctaagta-caaaactataattttggcccccta 12353377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 38980146 - 38980058
Alignment:
Q  399 aggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    ||||||||||||||||||||||   |||||||||| |  |||| ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  38980146 aggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatg 38980058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 39011243 - 39011155
Alignment:
Q  399 aggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    ||||||||||||||||||||||   |||||||||| |  |||| ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  39011243 aggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatg 39011155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 38974795 - 38974882
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||||||   |||||||||| |  |||| ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  38974795 ggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatg 38974882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 39005893 - 39005980
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||||||   |||||||||| |  |||| ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  39005893 ggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatg 39005980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 22220388 - 22220473
Alignment:
Q  400 ggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||| |  |||||| ||  |||||||||||||  ||||||||||| ||||| ||||||||| |||||||    
T  22220388 ggctaaagtgcacttttccccctctaactttaaaatacttgcaattttgaccccctatgtataaaaactacaattttggcccccta 22220473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 479
Target Start/End: Complemental strand, 24488761 - 24488699
Alignment:
Q  417 ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccc 479  Q
    |||| |||||||||| ||||||||||||||| ||||||  ||||||||| |||||||||||||    
T  24488761 ccccctaactttcaaaaacttgcaattttggccccctaaatatcaaaacaacaattttgcccc 24488699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 485
Target Start/End: Original strand, 32968454 - 32968543
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||||||||   |||||||||| |  |||| ||||||| |||| |||||| ||||||||||||||| ||| |||||    
T  32968454 taggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccctctatg 32968543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 483
Target Start/End: Complemental strand, 1824155 - 1824094
Alignment:
Q  422 taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||| |||||||||||||||||||||| |||  ||||| ||||||||| |||||||    
T  1824155 taactttcaaaaacttgcaattttggtcccctaagtacaaaaactacaattttggcccccta 1824094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 483
Target Start/End: Complemental strand, 1858600 - 1858539
Alignment:
Q  422 taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||| |||||||||||||||||||||| |||  ||||| ||||||||| |||||||    
T  1858600 taactttcaaaaacttgcaattttggtcccctaagtacaaaaactacaattttggcccccta 1858539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 8388463 - 8388547
Alignment:
Q  399 aggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||| |||| ||||||| || || |||||||||| | ||||||||||  ||||| | ||||||| |||||||    
T  8388463 aggctaaagtgcactttcccccctaacttttaaaaagttgcaattttagccccctatgtacaaaaactataattttggcccccta 8388547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 32974037 - 32973950
Alignment:
Q  400 ggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||  |||| |||||||||| |  |||| ||||||| |||| |||||| ||||||||||||||| ||| |||||    
T  32974037 ggctaaagtgcactttttcccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccctctatg 32973950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 32207425 - 32207349
Alignment:
Q  399 aggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||||||||||||||| |||| |||| ||||| ||||||||||||||   ||||| |||  ||||| |||||||||    
T  32207425 aggctaaagtgcactttcccccctaaccttcaaaaacttgcaattttgacgccctaagtacaaaaactacaattttg 32207349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 8389792 - 8389714
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    |||| ||||||||||||||||||   ||| |||||| || |||||||||||||||| ||||||  ||||| ||||||||    
T  8389792 taggttaaagtgcacttttcccctcttaagtttcaaaaagttgcaattttggtcccttatgtacaaaaactacaatttt 8389714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 45114618 - 45114540
Alignment:
Q  399 aggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||| ||||||||||||||  || |||||||||| |||||||||||||||| | |||||||   |||| |||||||||    
T  45114618 aggctgaagtgcacttttccgcccctaactttcaaaaacttgcaattttggttcactatgtacacaaactacaattttg 45114540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 480
Target Start/End: Complemental strand, 2380023 - 2379943
Alignment:
Q  398 taggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||||||||  |||||||||| |||||||||| || ||| |||||||| |||||||||| | |||| ||||||||| ||||    
T  2380023 taggctaaagtttacttttccccctaactttcaaaaagttgtaattttgg-cccctatgta-cgaaactacaattttggcccc 2379943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 5003198 - 5003116
Alignment:
Q  399 aggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgta-tcaaaaccacaattttgccccc 480  Q
    ||||||||| ||||||| |||| |||||||||| | |||||||||||   |||||| ||| | ||||||||||||||| ||||    
T  5003198 aggctaaagcgcactttcccccctaactttcaaaatcttgcaattttaaacccctaagtactaaaaaccacaattttgtcccc 5003116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 454
Target Start/End: Complemental strand, 23170098 - 23170044
Alignment:
Q  400 ggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtccccta 454  Q
    |||||||||||| ||| |||| ||| |||||| |||||||||||||| |||||||    
T  23170098 ggctaaagtgcattttcccccctaattttcaaaaacttgcaattttgatccccta 23170044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 472
Target Start/End: Complemental strand, 29968434 - 29968364
Alignment:
Q  403 taaagtgcacttttccccgt-aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatt 472  Q
    |||||||||||||||||| | |||||| || ||||||||||||||| |||||| |||  ||||| ||||||    
T  29968434 taaagtgcacttttcccccttaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaatt 29968364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 11288970 - 11288914
Alignment:
Q  391 aaaagaataggctaaagtgcactttt--ccccgtaactttcaacaacttgcaatttt 445  Q
    |||| |||||||||||||||||||||   ||| |||||||||| |||||||||||||    
T  11288970 aaaacaataggctaaagtgcactttttcacccctaactttcaaaaacttgcaatttt 11288914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 11456636 - 11456696
Alignment:
Q  398 taggctaaagtgcacttttc--cccgtaactttcaacaacttgcaattttggtcccctatg 456  Q
    ||||||||||||||||||||  ||| ||| |||||| || |||||||||||| ||||||||    
T  11456636 taggctaaagtgcacttttctccccctaattttcaaaaatttgcaattttggccccctatg 11456696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 24123998 - 24123950
Alignment:
Q  398 taggctaaagtgcacttttccccgtaactttcaacaacttgcaattttgg 447  Q
    ||||||||||| |||||  ||||||||||||||| |||||||||||||||    
T  24123998 taggctaaagtacacttc-ccccgtaactttcaaaaacttgcaattttgg 24123950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 454
Target Start/End: Original strand, 24483143 - 24483199
Alignment:
Q  400 ggctaaagtgcacttttccc--cgtaactttcaacaacttgcaattttggtccccta 454  Q
    ||||||||||||||||||||  | ||| |||||| ||||||||||||||| ||||||    
T  24483143 ggctaaagtgcacttttcccctcctaattttcaaaaacttgcaattttggcccccta 24483199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 11282006 - 11282093
Alignment:
Q  398 taggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||| ||||||||||||||  |||| ||||||| || || |||||||||||| ||||||| ||  ||||  ||||||||| |||||||    
T  11282006 taggttaaagtgcactttttcccccttaacttttaaaaagttgcaattttggccccctatatacaaaaatgacaattttgacccccta 11282093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 397 - 481
Target Start/End: Original strand, 36449775 - 36449861
Alignment:
Q  397 ataggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccc 481  Q
    ||||||||||||||||||||||||   |||||||||| ||||||||||||||| |||||| |||  ||||| |||||||||||||||    
T  36449775 ataggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttgcccccc 36449861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 1034570 - 1034485
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||   |||||||||| ||| ||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  1034570 ggctaaagtgcacttttccccccttaactttcaaaaacatgcaattttggccccctacgtaccaaaaccacaatttagccccccta 1034485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 18299373 - 18299460
Alignment:
Q  400 ggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||||  ||||||||||||| ||||| ||||||||| | |||| |||| ||||| ||||||||| |||||||||    
T  18299373 ggctaaagtgcacttttccacccgtaactttcaaaaactttcaattttggccacctaagtataaaaactacaattttggccccctatg 18299460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 7899985 - 7899898
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||   |||||||||| |||||||||||||||||||||| |||   |||| ||||||||  |||||||    
T  7899985 taggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggtcccctaagtacagaaactacaattttagcccccta 7899898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 11938891 - 11938805
Alignment:
Q  398 taggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||  || |||||||||| ||||||||||||||||| |||| ||| |||||  | |||||||||||||||    
T  11938891 taggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttggtctcctaagta-caaaaatataattttgccccccta 11938805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 483
Target Start/End: Original strand, 18797242 - 18797332
Alignment:
Q  396 aataggctaaagtgcacttttcc---ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||   || |||||||||| ||||||||||||||  ||| || |||| ||||| ||||||||| |||||||    
T  18797242 aataggctaaagtgcacttttccaccccctaactttcaaaaacttgcaattttgaccccttaagtattaaaactacaattttgacccccta 18797332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 454
Target Start/End: Complemental strand, 21837355 - 21837300
Alignment:
Q  399 aggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtccccta 454  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||    
T  21837355 aggctaaagtgcactttttcccctaactttcaaaaacttgcaattttggcccccta 21837300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 22848190 - 22848268
Alignment:
Q  399 aggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||||||||||||||||  |||| |||||||||| ||||||||||||||||||||||  ||  ||||| |||||||||    
T  22848190 aggctaaagtgcacttttacccccctaactttcaaaaacttgcaattttggtcccctaaatacaaaaactacaattttg 22848268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 396 - 483
Target Start/End: Complemental strand, 38840598 - 38840509
Alignment:
Q  396 aataggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||||||||   |||||||||| ||||||||||||| | |||||| |||  ||||| ||||||||  |||||||    
T  38840598 aataggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttagcccccta 38840509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 454
Target Start/End: Complemental strand, 36451023 - 36450966
Alignment:
Q  398 taggctaaagtgcacttttccccgt-aactttcaacaacttgcaattttggtccccta 454  Q
    |||| |||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  36451023 taggttaaagtgcacttttcccccttaactttcaaaaacttgcaattttggtccccta 36450966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 22588055 - 22587973
Alignment:
Q  399 aggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||||||||||| ||||||||   |||||||||| ||||||||||||||| ||||||||||  ||||| ||||||||| ||||    
T  22588055 aggctaaagtgcatttttcccctcataactttcaaaaacttgcaattttgg-cccctatgtacaaaaactacaattttggcccc 22587973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 480
Target Start/End: Complemental strand, 18300822 - 18300743
Alignment:
Q  401 gctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||| ||||||||||||| |||||||||  ||||||||||||||  |||||| |||  ||||| ||||||||| ||||    
T  18300822 gctaaattgcacttttccccctaactttcataaacttgcaattttgaccccctaagtacaaaaactacaattttgacccc 18300743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 18906090 - 18906012
Alignment:
Q  398 taggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||||| | |||||| |||  ||||| ||||||||    
T  18906090 taggctaaagtgcacttttccccttctaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaatttt 18906012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 483
Target Start/End: Original strand, 7898687 - 7898776
Alignment:
Q  396 aataggctaaagtgcacttttc--cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||| |||||||||||||||  ||| |||||||||| ||||||||||||| | | |||| ||||  |||| ||||||||| |||||||    
T  7898687 aataggttaaagtgcacttttctccccttaactttcaaaaacttgcaatttttgcctcctaagtatagaaactacaattttggcccccta 7898776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 447
Target Start/End: Original strand, 13030293 - 13030339
Alignment:
Q  401 gctaaagtgcacttttccccgtaactttcaacaacttgcaattttgg 447  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||    
T  13030293 gctaaagtgcacttttccccctaactttcaaaaacttgtaattttgg 13030339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 802692 - 802615
Alignment:
Q  399 aggctaaagtgcacttttccccg-taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    ||||||||||| ||||||||||  ||| |||||| ||||||||||||||| ||||| ||||  ||||| |||||||||    
T  802692 aggctaaagtgtacttttcccccctaagtttcaaaaacttgcaattttggccccctgtgtacaaaaactacaattttg 802615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 475
Target Start/End: Original strand, 18904365 - 18904444
Alignment:
Q  398 taggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||||||||||||||||||  |||| |||||||||| ||| ||||||||||| ||| || |||  ||||| |||||||||    
T  18904365 taggctaaagtgcacttttccccccttaactttcaaaaacgtgcaattttggccccttaagtacaaaaactacaattttg 18904444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 24476943 - 24476863
Alignment:
Q  400 ggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    ||||| ||||||||||| |||  |||||| || |||||| ||||||||||||||| |||  ||||| ||||||||| ||||    
T  24476943 ggctagagtgcactttttcccccaacttttaaaaacttgtaattttggtcccctaagtacaaaaactacaattttgacccc 24476863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 481
Target Start/End: Original strand, 32739639 - 32739706
Alignment:
Q  413 ttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccc 481  Q
    |||||||| |||||||||| ||||||||||||||| ||| ||||||  ||||| ||||||||| |||||    
T  32739639 ttttcccc-taactttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttggccccc 32739706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 21837070 - 21837117
Alignment:
Q  400 ggctaaagtgcacttttccccgtaactttcaacaacttgcaattttgg 447  Q
    ||||||||||||||||| ||  |||||||||| |||||||||||||||    
T  21837070 ggctaaagtgcactttttcctctaactttcaaaaacttgcaattttgg 21837117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 474
Target Start/End: Complemental strand, 11258888 - 11258836
Alignment:
Q  422 taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    |||||||||| ||||||||||||||| |||||| |||  ||||| ||||||||    
T  11258888 taactttcaaaaacttgcaattttggccccctaagtacaaaaactacaatttt 11258836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 18868922 - 18868973
Alignment:
Q  398 taggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttgg 447  Q
    |||||||||||| ||||||||  || |||||||||| |||||||||||||||    
T  18868922 taggctaaagtgtacttttccacccctaactttcaaaaacttgcaattttgg 18868973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 38839240 - 38839327
Alignment:
Q  398 taggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||| ||||  |||| ||| |||||| ||||||||||||| | ||||||  ||  ||||| ||||||||| |||||||    
T  38839240 taggctaaagtgcattttttcccccttaattttcaaaaacttgcaattttagccccctaactacaaaaactacaattttggcccccta 38839327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 41879315 - 41879228
Alignment:
Q  398 taggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||| |||||||  |||| ||| |||||| ||||||||||||||| |||||| |||   |||| ||||||||  |||||||    
T  41879315 taggctaaagtacactttttcccccttaattttcaaaaacttgcaattttggccccctaagtacataaactacaattttaacccccta 41879228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 488
Target Start/End: Original strand, 23081 - 23169
Alignment:
Q  400 ggctaaagtgcacttttccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatgctt 488  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||  || ||| ||| |||||| ||||| |||| |||||| ||||    
T  23081 ggctaaagtgcacttttccccctaactttcaaaaacttgcaattttgtccctctaagtaccaaaacaacaatcttgctcccctaagctt 23169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 480
Target Start/End: Complemental strand, 23993 - 23909
Alignment:
Q  398 taggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||||||||||||||||  | || |||||||||| |||||||||||||||  |||||  ||||||||| |||| ||| |||||    
T  23993 taggctaaagtgcacttttttctccctaactttcaaaaacttgcaattttggctccctaaatatcaaaacaacaacttttccccc 23909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 220 - 133
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    |||||||||||||||||||||   |||||||||| |  |||| ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  220 ggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatg 133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 60090 - 60177
Alignment:
Q  400 ggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    ||||||||||||||||||| | |  |||||| || ||||||||||||||  ||||||||||| ||||| ||||||||| |||||||||    
T  60090 ggctaaagtgcacttttcctcctctaacttttaaaaacttgcaattttgaccccctatgtataaaaactacaattttgaccccctatg 60177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 485
Target Start/End: Complemental strand, 61559 - 61473
Alignment:
Q  401 gctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccctatg 485  Q
    ||||||||||||||||||  || ||| |||||| ||||||||||||| | |||||| |||  ||||| | ||||||| |||||||||    
T  61559 gctaaagtgcacttttcctcccttaattttcaaaaacttgcaattttagccccctaagtacaaaaactataattttggccccctatg 61473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 396 - 483
Target Start/End: Original strand, 1435 - 1524
Alignment:
Q  396 aataggctaaagtgcacttttccccgt--aactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||| |||||||||| |  |||||| || ||||||||||||||  ||||||||||| ||||| | ||||||| |||||||    
T  1435 aataggctaaagtgtacttttccccctctaactttaaaaaacttgcaattttgaccccctatgtataaaaactataattttgacccccta 1524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 481
Target Start/End: Original strand, 17468 - 17553
Alignment:
Q  398 taggctaaagtgcactttt--ccccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgcccccc 481  Q
    |||||||||||||||||||  |||| ||||||| || ||||||||||||||| |||||| |||  ||||| ||||||||| |||||    
T  17468 taggctaaagtgcactttttcccccttaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattttggccccc 17553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 396 - 483
Target Start/End: Complemental strand, 49538 - 49449
Alignment:
Q  396 aataggctaaagtgcacttttc--cccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||||  ||| ||||||| || || |||||||||||| |||||||  || ||||| ||||||||| |||||||    
T  49538 aataggctaaagtgcacttttctccccttaactttaaaaaagttgcaattttggccccctataaataaaaactacaattttgacccccta 49449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 483
Target Start/End: Complemental strand, 2564 - 2481
Alignment:
Q  401 gctaaagtgcacttttccccgtaactttc-aacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||  |||||| |||  ||||| || |||||| |||||||    
T  2564 gctaaagtgcacttttccccctaactttcaaaaaacttgcaattttgaccccctaagtacaaaaacaaccattttggcccccta 2481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 483
Target Start/End: Complemental strand, 7187 - 7104
Alignment:
Q  401 gctaaagtgcacttttccccgtaactttc-aacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||  |||||| |||  ||||| || |||||| |||||||    
T  7187 gctaaagtgcacttttccccctaactttcaaaaaacttgcaattttgaccccctaagtacaaaaacaaccattttggcccccta 7104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 475
Target Start/End: Original strand, 233 - 310
Alignment:
Q  400 ggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||||||||||||||| ||||   |||||||||| || |||||||||||||||||||||||  ||||| | |||||||    
T  233 ggctaaagtgcactttcccccccttaactttcaaaaagttgcaattttggtcccctatgtacaaaaactataattttg 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 480
Target Start/End: Complemental strand, 5541 - 5457
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccc 480  Q
    |||||||||||||||||||||||   ||| |||||| ||||||||||||||  ||| || |||  ||||| ||||||||||||||    
T  5541 taggctaaagtgcacttttccccccctaattttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttgccccc 5457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 475
Target Start/End: Original strand, 19486 - 19565
Alignment:
Q  398 taggctaaagtgcacttttccccg--taactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttg 475  Q
    |||||||||||||| ||||||||   ||| |||||| | ||||||||||||| |||||| |||| ||||| |||||||||    
T  19486 taggctaaagtgcatttttccccccttaattttcaaaaccttgcaattttggccccctaagtataaaaactacaattttg 19565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 49185 - 49109
Alignment:
Q  400 ggctaaagtgcacttttcc--ccgtaactttcaacaacttgcaattttggtcccctatgtatcaaaaccacaatttt 474  Q
    ||||||| |||||||||||  || ||||||| || ||||||||||||||| | |||| |||| ||||| ||||||||    
T  49185 ggctaaattgcacttttccacccttaacttttaaaaacttgcaattttggcctcctaagtattaaaactacaatttt 49109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 37148 - 37232
Alignment:
Q  400 ggctaaagtgcacttttccccgtaac-tttcaacaacttgcaattttggtcccctatgtatcaaaaccacaattttgccccccta 483  Q
    ||||||||||||||||||||| || | ||| || || |||||||||||  |||||| |||  ||||| ||||||||| |||||||    
T  37148 ggctaaagtgcacttttccccctatcttttaaaaaatttgcaattttgaccccctaagtacaaaaacaacaattttggcccccta 37232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University