View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15277_high_6 (Length: 349)
Name: NF15277_high_6
Description: NF15277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15277_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 16342852 - 16343182
Alignment:
| Q |
17 |
aaatccagtcacgtgcgtgagtaatctttctgtaattcatttttgaaaggaaaa-aataataattcatagtataaaaataacaagagaaaatcaaactta |
115 |
Q |
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| T |
16342852 |
aaatcgagtcacgtgcgtgagtaatctttctgtaattcatttttgaaaggaaaataataataattcatagtataaaaataacaagagaaaatcaaactta |
16342951 |
T |
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| Q |
116 |
taatttgtttcttgaaactaagtggtgaaagttacaactttattg----gacatcattttaggacggttgagtgtt-ggggcgattttgctgggtaatca |
210 |
Q |
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| T |
16342952 |
taatttgtttcttgaaactaagtggtgaaagttacaacttaattgggacgacatcattttaggacggttgagtgttgggggcgattttgctgggt-atca |
16343050 |
T |
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| Q |
211 |
agaattggtaaaagacatataaaatgattgtcaagttttgggtgaaggttgttttgcgttgaaggnnnnnnnnttaaaagaataaggtgttgccttcgtg |
310 |
Q |
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| T |
16343051 |
agaattggtaaaagacatataaaatgattgtcaagttttgagtgaaggttgttttgcgttgaagg-aaaaaaattaaaagaataaggtgttgccttcgtg |
16343149 |
T |
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| Q |
311 |
attgacataaaaaacatagtcaaagtattgaag |
343 |
Q |
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| T |
16343150 |
attgacacaaaaaacatagtcaaagtattgaag |
16343182 |
T |
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