View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15277_high_9 (Length: 329)
Name: NF15277_high_9
Description: NF15277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15277_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 891631 - 891929
Alignment:
| Q |
12 |
agagaggcgatacatttacagggatgactctccatccagtaccaccagatgaatcaggcgaaggattaccatatgctcctgagaattggccacaacaagg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
891631 |
agagaggcgatacatttacagggatgactctccatccagtaccaccagatgaatcaggcgaaggattaccatatgctcctgagaattggccacaacaagg |
891730 |
T |
|
| Q |
112 |
tgacatctggggatggaaaactggtaaaagacttcataacaatggatgctttcaagatcgatatctttactcaccgtcccgattgagtactcagaaaggt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
891731 |
tgacatctggggatggaaaactggtaaaagacttcataacaatggatgctttcaagatcgttatctttactcaccgtcccgattgagtactcagaaaggt |
891830 |
T |
|
| Q |
212 |
ggatccagtcgcaaacatcgccatatctttgctagcaagctctctgttgaaagatacatcaaagccacttttcctgattctgatattgatgccttcttt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
891831 |
ggatccagtcgcaaacatcgccatatctttgctagcaagctctctgttgaacgatacatcaaagccacttttcctgattctgatattgatgccttcttt |
891929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University