View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15277_low_1 (Length: 676)

Name: NF15277_low_1
Description: NF15277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15277_low_1
NF15277_low_1
[»] chr6 (1 HSPs)
chr6 (1-664)||(35077565-35078230)


Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 664
Target Start/End: Original strand, 35077565 - 35078230
Alignment:
Q  1 caaaaccttctctagatcccgttttttgaccatacattactttcaccattctgcttcaaagatgttcgattttgtttcatgcaaccttttctttatttag 100  Q
    |||||||||||||||||||| ||||| || ||||||| | ||||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  35077565 caaaaccttctctagatcccctttttagatcatacataaatttcatcattatgcttcaaaaatgttagattttgtttcatgcaaccttttctttatttag 35077664  T
Q  101 ctttcatctaactcttatctttatatgctccattgttgatctgcnnnnnnnaccactggtttatgcaactaagatcttaactttacctctcgctgcgttc 200  Q
     ||||||| || |||||||||||||||||| ||||||||||||        ||||| |||||| ||||| |||||||||||||| |||||||||| ||||    
T  35077665 atttcatcaaaatcttatctttatatgctcaattgttgatctgattttgttaccacaggtttaagcaacaaagatcttaactttgcctctcgctgtgttc 35077764  T
Q  201 tttcatcttcctccgacaaggtttgtctctgtttaatgtccacctcgtaccctacattgtttgtgttttttcaataaagtttgnnnnnnncttcataggg 300  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  35077765 tttcatcttcctccgacaaggttcgtctctgtttcatgtctacctcgtaccctacattgtttgtgttttttcaataaagtttgtttttttcttcataggg 35077864  T
Q  301 gatggcccttttactgccctagaccgttatttattgttgggctgtgtttggttgaaatgggtcattttgtttttgccatgtgttaatggtaatctagcta 400  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35077865 gatagcccttttactgccctagaccgttatttattgttgggctgtgtttggttgaaatgggtcattttgtttttgccatgtgttaatggtaatctagcta 35077964  T
Q  401 attgttacgaaagggttaaacttgaaccaaaccaccataaaatt-at-ttttttcatgtcattttctatgttataccnnnnnnnnnngtgtgtaaattgc 498  Q
    |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||          |||||||||||||    
T  35077965 attgctacgaaagggttaaacttgaaccaaaccaccataaaattgatattttttcatgtcattttctatgttataccttttttttttgtgtgtaaattgc 35078064  T
Q  499 gtgcaactgcagagagtaatccctcgagttgggtggcaaaactctctctgcagagatttatcactgctgcattcctagagcttgatttgaacccatgacc 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35078065 gtgcaactgcagagagtaatccctcgagttgggtggcaaaactctctctgaagagatttatctctgctgcattcctagagcttgatttgaacccatgacc 35078164  T
Q  599 ttcttgggtctatgtgataccttttgtgctatggtctttatgatgtacatttctaatttagtaact 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35078165 ttcttgggtctatgtgataccttttgtgctatggtctttatgatgtacatttctaatttagtaact 35078230  T

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