View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15277_low_11 (Length: 285)

Name: NF15277_low_11
Description: NF15277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15277_low_11
NF15277_low_11
[»] chr6 (3 HSPs)
chr6 (19-189)||(2560907-2561077)
chr6 (204-274)||(2561130-2561200)
chr6 (19-101)||(2559454-2559536)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 2560907 - 2561077
Alignment:
Q  19 gtaattccatagtccgtcaattccttagtcaatacaaaatgtgtctcaatttcaagttaatcaatcatggttatagatattgattatataagcctgatgt 118  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2560907 gtaattccatagtccgtcaattccctagtaaatacaaaacgtgtctcaatttcaagttaatcaatcatggttatagatattgattatataagcctgatgt 2561006  T
Q  119 tatttgtcctcctctagttttgaaccgagacttgcatatgttatttctaaccatacgtttcactcttattc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2561007 tatttgtcctcctctagttttgaaccgagacttgcatatgttatttctaaccacacgtttcactcttattc 2561077  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 2561130 - 2561200
Alignment:
Q  204 taggatcttgtgttactttgaagcgtcaaacaccctccatatgctattgtttcaatatgatcttgcttctt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2561130 taggatcttgtgttactttgaagcgtcaaacaccctccatatgctattgtttcaatatgatcttgcttctt 2561200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 2559454 - 2559536
Alignment:
Q  19 gtaattccatagtccgtcaattccttagtcaatacaaaatgtgtctcaatttcaagttaatcaatcatggttatagatattga 101  Q
    |||||||||||||||||||||||| | || ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  2559454 gtaattccatagtccgtcaattccctggtaaatacaaaacgtgtctcaatttcaagttaatcaatcatggttatggatattga 2559536  T

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