View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15277_low_3 (Length: 418)

Name: NF15277_low_3
Description: NF15277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15277_low_3
NF15277_low_3
[»] chr2 (23 HSPs)
chr2 (14-400)||(30383654-30384040)
chr2 (226-400)||(30393997-30394169)
chr2 (14-186)||(30393805-30393977)
chr2 (300-399)||(30436363-30436462)
chr2 (300-401)||(30424112-30424213)
chr2 (291-401)||(30475225-30475335)
chr2 (300-401)||(30468105-30468206)
chr2 (291-401)||(8380135-8380245)
chr2 (308-401)||(30430153-30430246)
chr2 (300-401)||(30482837-30482938)
chr2 (275-401)||(23784317-23784443)
chr2 (113-186)||(30482149-30482222)
chr2 (85-181)||(30429870-30429966)
chr2 (113-181)||(30423865-30423933)
chr2 (114-181)||(30467860-30467927)
chr2 (115-184)||(8381668-8381737)
chr2 (114-182)||(30436070-30436138)
chr2 (275-401)||(23767636-23767762)
chr2 (118-184)||(23767286-23767352)
chr2 (118-184)||(23784775-23784841)
chr2 (275-401)||(23796805-23796931)
chr2 (115-181)||(30474988-30475054)
chr2 (118-154)||(23796479-23796515)
[»] chr5 (2 HSPs)
chr5 (14-184)||(41628725-41628895)
chr5 (290-401)||(41628402-41628513)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 400
Target Start/End: Original strand, 30383654 - 30384040
Alignment:
Q  14 cagaacctgtgcaaataaaagatgtgttaaacaagatgtctgaattcccaaagactaattataagattttcaagttactagctaatgcacttgctaatta 113  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  30383654 cagaacctgagcaaataaaagatgtgttgaacaagatgtctgaattcccaaagcctaattacaagattttcaagttactagctaatgcacttgctaatta 30383753  T
Q  114 tgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggttagtgatatatcaagttatagattataagtt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30383754 tgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggttagtgatatatcaagttatagattataagtt 30383853  T
Q  214 aatttatatgaatttgactggaaatttgaagtcttgagtcatttctttatgaatatacaacagattatgaccccggctttcttcataagttgcaatgatt 313  Q
    | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30383854 agtttatatgaatttgactggaaatttgaagtcttaagtcatttccttatgaatatacaacagattatgaccccggctttcttcacaagttgcaatgatt 30383953  T
Q  314 tgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30383954 tgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatg 30384040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 226 - 400
Target Start/End: Original strand, 30393997 - 30394169
Alignment:
Q  226 tttgactggaaatttgaagtcttgagtcatttctttatgaatatacaacagattatgaccccggctttcttcataagttgcaatgatttgattaacaaat 325  Q
    |||||||||||||||||| | || ||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  30393997 tttgactggaaatttgaattttt-agtcatttctttatgaa-atacgacagattatgaccccggctttcttcacaagttgcaatgatatgattagcaaat 30394094  T
Q  326 gggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatg 400  Q
    ||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  30394095 gggaggaaatgttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaatttggcaagtgatg 30394169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 30393805 - 30393977
Alignment:
Q  14 cagaacctgtgcaaataaaagatgtgttaaacaagatgtctgaattcccaaagactaattataagattttcaagttactagctaatgcacttgctaatta 113  Q
    ||||||||| ||||||||||||||| || ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||  ||||||| |||    
T  30393805 cagaacctgagcaaataaaagatgtattgaacaaaatgtctgacttcccaaagactaactataagattttcaagttactagctagtggtcttgctagtta 30393904  T
Q  114 tgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggttagt 186  Q
    || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||    
T  30393905 tgggggagaaaaatggagcaagcatagaaggctaatcaaccctgctttccatttagaacaattgaaggttagt 30393977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 30436363 - 30436462
Alignment:
Q  300 aagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgat 399  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||  ||||||||| ||| ||||||||||| ||||||    
T  30436363 aagttgcgatgatttgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggccagtgat 30436462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 30424112 - 30424213
Alignment:
Q  300 aagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgat 399  Q
    ||||||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| ||  ||||||||| ||| ||||||||||| ||||||    
T  30424112 aagttgcgatgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggcgagtgat 30424211  T
Q  400 gt 401  Q
    ||    
T  30424212 gt 30424213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 291 - 401
Target Start/End: Original strand, 30475225 - 30475335
Alignment:
Q  291 tttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttg 390  Q
    |||||||| ||||||  |||||||||||| ||||||||||| ||||||||| |||||||||||||||||| | ||| | ||||||| ||| |||||||||    
T  30475225 tttcttcaaaagttgtgatgatttgattaccaaatgggagagaatgttgtcatcagatggatcatgtgaattggatgtttggcctttccttcaaaatttg 30475324  T
Q  391 gcaagtgatgt 401  Q
    || ||||||||    
T  30475325 gcgagtgatgt 30475335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 30468105 - 30468206
Alignment:
Q  300 aagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgat 399  Q
    ||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| ||  ||||||||| ||| |||||||| || ||||||    
T  30468105 aagttgcgatgatctgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgat 30468204  T
Q  400 gt 401  Q
    ||    
T  30468205 gt 30468206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 401
Target Start/End: Complemental strand, 8380245 - 8380135
Alignment:
Q  291 tttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttg 390  Q
    |||| ||| |||||||| |||| |||||| ||||||||||  || |||||| |||||||||||| |||||||||| |||||||||||||| || ||||||    
T  8380245 tttcctcacaagttgcattgatatgattagcaaatgggagtcaacgttgtcatcagatggatcaggtgaaatagacatatggccttccctacagaatttg 8380146  T
Q  391 gcaagtgatgt 401  Q
     ||||||||||    
T  8380145 acaagtgatgt 8380135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 30430153 - 30430246
Alignment:
Q  308 atgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatgt 401  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| ||  ||||||||| ||| |||||||| ||||| |||||    
T  30430153 atgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggaagtatggcctttccttcaaaatttagcaagagatgt 30430246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 30482837 - 30482938
Alignment:
Q  300 aagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgat 399  Q
    ||||||||||||| |||||| ||||||||||  |||||| || | |||||||||||||||||| ||| ||||||||||| | ||||||||||| ||||||    
T  30482837 aagttgcaatgatatgattagcaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgat 30482936  T
Q  400 gt 401  Q
    ||    
T  30482937 gt 30482938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 275 - 401
Target Start/End: Complemental strand, 23784443 - 23784317
Alignment:
Q  275 agattatgaccccggctttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggcc 374  Q
    |||||||||| ||  | ||||| | ||| |||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||| ||  |||||||    
T  23784443 agattatgacaccaacattcttgaaaagctgcaatgatttgattagcaattgggaaaaaatgttgtcttcaaatggatcatgtgaaatggacgtatggcc 23784344  T
Q  375 ttccctgcaaaatttggcaagtgatgt 401  Q
    |||||| || |  ||| ||||||||||    
T  23784343 ttcccttcagagcttgacaagtgatgt 23784317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 30482149 - 30482222
Alignment:
Q  113 atgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggttagt 186  Q
    ||||||| |||||||||||||||||||||||| |||| || ||||| |||||||||||||| ||||||||||||    
T  30482149 atgagggtgaaaagtggagcaagcatagaaagataataaatcctgcattccatttagaaaaattgaaggttagt 30482222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 30429870 - 30429966
Alignment:
Q  85 aagttactagctaatgcacttgctaattatgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaagg 181  Q
    ||||||||||||||||  ||||| | | ||||||||||| ||||||||||||| |||||| | ||||||||||| |||||| ||||||| |||||||    
T  30429870 aagttactagctaatggccttgcaagtcatgagggagaacagtggagcaagcacagaaagattatcaaccctgcattccatgtagaaaaattgaagg 30429966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 30423865 - 30423933
Alignment:
Q  113 atgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaagg 181  Q
    ||||||||||| ||||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||    
T  30423865 atgagggagaacagtggagcaagcacagaaagattatcaaccctgcattccatttagaaaaattgaagg 30423933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 30467860 - 30467927
Alignment:
Q  114 tgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaagg 181  Q
    |||||||||| ||||||||||||| |||||| ||||||| ||||| |||||||||||||| |||||||    
T  30467860 tgagggagaacagtggagcaagcacagaaagataatcaatcctgcattccatttagaaaaattgaagg 30467927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 8381737 - 8381668
Alignment:
Q  115 gagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggtta 184  Q
    ||||||||||||||||| |||||||||| | |||| ||| |||||||||| |||||||| ||||||||||    
T  8381737 gagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggtta 8381668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 30436070 - 30436138
Alignment:
Q  114 tgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggt 182  Q
    |||||||||| ||||||||||||| |||||| |||| || ||||| |||||||||||||| ||||||||    
T  30436070 tgagggagaacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaaggt 30436138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 401
Target Start/End: Original strand, 23767636 - 23767762
Alignment:
Q  275 agattatgaccccggctttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggcc 374  Q
    |||||||||| ||  | ||||| | ||| ||||| |||||||||| ||| |||||  ||| |||||||||| ||||||| | ||||||||| ||||||||    
T  23767636 agattatgacaccaacattcttgaaaagctgcaacgatttgattagcaattgggaagaaacgttgtcttcaaatggatcctctgaaatagacatatggcc 23767735  T
Q  375 ttccctgcaaaatttggcaagtgatgt 401  Q
    |||||| || |  ||| ||||||||||    
T  23767736 ttcccttcagagcttgacaagtgatgt 23767762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 23767286 - 23767352
Alignment:
Q  118 ggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggtta 184  Q
    ||||||||||||| ||||||||||| | |||||||||||||||| ||  | ||||| ||||||||||    
T  23767286 ggagaaaagtggaccaagcatagaaggataatcaaccctgcttttcacatggaaaaattgaaggtta 23767352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 23784841 - 23784775
Alignment:
Q  118 ggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggtta 184  Q
    |||||||||||||||||||||||||   ||||||||||||| || ||  | ||||| ||||||||||    
T  23784841 ggagaaaagtggagcaagcatagaagaataatcaaccctgcgtttcacatggaaaaattgaaggtta 23784775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 401
Target Start/End: Original strand, 23796805 - 23796931
Alignment:
Q  275 agattatgaccccggctttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggcc 374  Q
    |||||||||| ||  | ||||| | ||| ||||| |||||||||| ||| |||||  ||| ||||||||||  |||| | | ||||||||| ||||||||    
T  23796805 agattatgacaccaacattcttgaaaagctgcaacgatttgattagcaattgggaagaaacgttgtcttcaagtggagcctctgaaatagacatatggcc 23796904  T
Q  375 ttccctgcaaaatttggcaagtgatgt 401  Q
    |||||| || |  ||| ||||||||||    
T  23796905 ttcccttcagagcttgacaagtgatgt 23796931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 30474988 - 30475054
Alignment:
Q  115 gagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaagg 181  Q
    ||||| ||||||||||||||||| ||||||||||| || || || ||| || ||||||| |||||||    
T  30474988 gagggcgaaaagtggagcaagcacagaaagctaattaatccggcattcaatatagaaaaattgaagg 30475054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 23796479 - 23796515
Alignment:
Q  118 ggagaaaagtggagcaagcatagaaagctaatcaacc 154  Q
    ||||||||||||||||||||||||| | |||||||||    
T  23796479 ggagaaaagtggagcaagcatagaaggataatcaacc 23796515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 41628895 - 41628725
Alignment:
Q  14 cagaacctgtgcaaataaaagatgtgttaaacaagatgtctgaattcccaaagactaattataagattttcaagttactagctaatgcacttgctaatta 113  Q
    ||||||||| |||||| | |||||| || ||||| || ||||| || ||||||| |||| ||||||||||||||||||||| || ||  ||||| | |      
T  41628895 cagaacctgagcaaatcatagatgtattgaacaatatctctgactttccaaagaataatcataagattttcaagttactagttagtggtcttgcaagtct 41628796  T
Q  114 tgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggtta 184  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| ||||||||||    
T  41628795 tgagggagaaaagtggagcaagcatagaaggctaatcaaccccgctttccattcagaaaaattgaaggtta 41628725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 401
Target Start/End: Complemental strand, 41628513 - 41628402
Alignment:
Q  290 ctttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaattt 389  Q
    ||||||||| ||||||||| ||||| ||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||    
T  41628513 ctttcttcacaagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagatatatggccttcccttcagaattt 41628414  T
Q  390 ggcaagtgatgt 401  Q
    ||| ||||||||    
T  41628413 ggcgagtgatgt 41628402  T

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