View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15277_low_9 (Length: 334)
Name: NF15277_low_9
Description: NF15277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15277_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 40545032 - 40544726
Alignment:
| Q |
11 |
cagagattggttaaggtgctttcacaacaaagctaaagaatcacaaacaaaaggtataaataacatctaattaatctaattaaaaacatcatcaaaagtc |
110 |
Q |
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| T |
40545032 |
cagagattagttaaggtgctttcacaacaaagctaaagaatcacaaacaaaaggtataaataacatctaattaatctaattaaaaacatcatcaaaagtc |
40544933 |
T |
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| Q |
111 |
aaaacccatgctaggagccaatccacaatgatgggctaaaaacaaacttagccaaaatcattctccttgatctacttaaaatcccaacttcgcaaccagc |
210 |
Q |
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| T |
40544932 |
aaaacccatactaggagccaatccacaatgatgggctaaaaacaaacttagccaaaatcattccccttgatctacttaaaatcccaacttcgcaaccagc |
40544833 |
T |
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| Q |
211 |
tagccttgggttattcatatcaatcatataggaaaattttggattggtaaccctgtcggtatataagcaaagacaagataaagatcaataatgaaaagat |
310 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40544832 |
tagccttgggttgttcatatcaatcatataggaaaattttggattggtaaccctgtcggtatataagcaaagacaagataatgatcaataatgaaaagat |
40544733 |
T |
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| Q |
311 |
gagaaac |
317 |
Q |
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||||||| |
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| T |
40544732 |
gagaaac |
40544726 |
T |
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