View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15278_high_16 (Length: 248)
Name: NF15278_high_16
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15278_high_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 12757521 - 12757275
Alignment:
| Q |
1 |
aagatttaagccaaactgaaaccaaatgaagacaaaaatacaaaaccccaagtctaaagaacataaacgcgggtattacccatctcaaatagaaccgaca |
100 |
Q |
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| T |
12757521 |
aagatttaagccaaactgaaaccaaatgaagacaaaaatacaaaaccctaagtctaaagaacataaacgcgggtatggtc-atctcaaatagaaccgaca |
12757423 |
T |
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| Q |
101 |
catacacgaggatatgtttagtttatcaaaaaatatgatagatgttaaatgattcatatgaaaagtagcaaaatcaaatatgagaaatataaatcttgca |
200 |
Q |
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| T |
12757422 |
catacacgaggatatgtttagtttatcaaaaaatatgatagatgttaaatgattcatatgaaaagtagcaaaatcaaatatgagaaatatagatcttgca |
12757323 |
T |
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| Q |
201 |
gtgtcctttgtcttggcaagatcagtttggtgttattaagaaatggag |
248 |
Q |
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| T |
12757322 |
gggtcctttgtcttggcaatatcagtttggtgttattaagaaatggag |
12757275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 12751784 - 12751698
Alignment:
| Q |
84 |
ctcaaatagaaccgacacatacacgaggatatgtttagtttatcaaaaaatatgatagatgttaaatgattcatatgaaaagtagcaa |
171 |
Q |
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| T |
12751784 |
ctcaaataaaactgacacatatacgaggatatgtttagtttat-aaaaaaaatgatagattttaaatgattcatttgaaaactagcaa |
12751698 |
T |
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