View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15278_high_18 (Length: 216)
Name: NF15278_high_18
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15278_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 27092690 - 27092505
Alignment:
| Q |
14 |
cataggtaatacctcttgctcaatctatatatttggattatatatggtcaaaataccttctagtcactgcaatcggcacatctagaccgttacatagggt |
113 |
Q |
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| T |
27092690 |
cataggtaatgcctcttgctcaatctatatatttggattacatatggtcaaaataccttctagtcactgcaatcggcacatctggaccgttacatagggt |
27092591 |
T |
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| Q |
114 |
taaaatgcctaaaccttacggtcaagatgtaccaattgcagtgattgtaagatattttgactgtgaaagacgcagacttgtaaact |
199 |
Q |
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| T |
27092590 |
taaaatgcctaaaccttactgtcaagatgtaccaattgcagtgattgtaagatattttgactgtgaaagacgcagacttgtaaact |
27092505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 27185611 - 27185796
Alignment:
| Q |
14 |
cataggtaatacctcttgctcaatctatatatttggattatatatggtcaaaataccttctagtcactgcaatcggcacatctagaccgttacatagggt |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27185611 |
cataggtaatgcctcttgctcaatctatatatttggattacatatggtcaaaataccttctagtcactgcaatcggcacatctggaccgttacatagggt |
27185710 |
T |
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| Q |
114 |
taaaatgcctaaaccttacggtcaagatgtaccaattgcagtgattgtaagatattttgactgtgaaagacgcagacttgtaaact |
199 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27185711 |
taaaatgcctaaaccttactgtcaagatgtaccaattgcagtgattgtaagatattttgactgtgaaagacgcagacttgtaaact |
27185796 |
T |
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