View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15278_high_5 (Length: 465)
Name: NF15278_high_5
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15278_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 361664 - 361221
Alignment:
| Q |
7 |
acatcatcactggtaacaaatcgagaacatgagttaaggatgtaatcacgtgtgtcggtagggtacactaacatatggacactagtaataatgttagaaa |
106 |
Q |
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| T |
361664 |
acatcaccactggtaacaaatcgagaacatgagttaaggatgtaatcacgtgtatcggtatggtacactaacatatggacacttgtaataatgttaaaaa |
361565 |
T |
|
| Q |
107 |
tttattgaatataatcacatgtgtatatagttgtcgtattagtgtcggagaccataatgaagtgtatatgttccaactaattagctacctaacaatttag |
206 |
Q |
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| T |
361564 |
tttattgaatataatcacatgtgtatatagttgtcgtattagtgttggagaccatgatgaagtgtatatgtttcaactaattagctacctaacaatttag |
361465 |
T |
|
| Q |
207 |
cattgacacatcacaaatcatattgaagatatgtctagtgttcgaaaataatgacacgaaattttcacatgtagtttttcggttacaatatatgctaatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
361464 |
cattgacacatcacaaatcatattgaagatatgtctagtgttggaaaataatgacacgaaattttcacatgtagtttttcggttacaatatatgctaatt |
361365 |
T |
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| Q |
307 |
taaatctatatatttgtatttgtaaaggattccagggatttcagtgattttagtgtcatggcttgtgacattttactcactatggcaactagtgcaaatg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
361364 |
taaatctatatatttgtatttgtaaaggattccagggatttcagtgattttagtgtcatggcttgtgacattttactcactgtggcaactagtgcaaatg |
361265 |
T |
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| Q |
407 |
cacgaattggttccagggaagagatttgatagatactttgattt |
450 |
Q |
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| T |
361264 |
catgaattggttccagggaagagatttgatagatactttgattt |
361221 |
T |
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