View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15278_high_6 (Length: 418)
Name: NF15278_high_6
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15278_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 35302826 - 35302436
Alignment:
| Q |
10 |
acatcatcaacttcctcaaacaacaacctgcgaaaccatattccaccnnnnnnntctggtttcaaactctatgaaagaagaaactctttgaaaaatcttc |
109 |
Q |
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| T |
35302826 |
acatcatcaacttcctcaaacaacaacctgcgaaaccatattccaccaaaaaaatctggtttcaaactctatgaaagaagaaactctttgaaaaatcttc |
35302727 |
T |
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| Q |
110 |
acctaaacccattacttcctgttttctcttcaaattcaaacaacccttcaagcttttcacctagaaaacctgaaattttgtctcctagtatcctagattt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35302726 |
acctaaacccattacttcctgttttctcttcaaattcaaacaacccttcaagcttttcacctagaaaacctgaaattctgtctcctagtatcctagattt |
35302627 |
T |
|
| Q |
210 |
tcctgcgcttgttcttagccctgttacacctcttataccggacccttttaacagaaccgccgtctctggtcaccgatgtggaaatggaagtccaaaacca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
35302626 |
tcctgcgcttgttcttagccctgttacacctcttataccggacccttttaacagaaccaccgtctctggtcaccgatgtggaaatggaagtcctaaacca |
35302527 |
T |
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| Q |
310 |
gttttgaacattgaagctgaagaaaaagctataaaagaaaagaagtttttcttacacccttcaccttcaactactccaagagactctgaac |
400 |
Q |
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| T |
35302526 |
gttttgaacattgaagctgaagaaaaagctataaaagaaaagaagtttttcttacacccttcaccttcaactactccaagagactctgaac |
35302436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 3840353 - 3840427
Alignment:
| Q |
187 |
ttgtctcctagtatcctagattttcctgcgcttgttcttagccctgttacacctcttataccggacccttttaac |
261 |
Q |
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| T |
3840353 |
ttgtcacctagtatcctagattttccttctcttgttcttagcccggttacaccacttatacccgacccatttaac |
3840427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 3840239 - 3840267
Alignment:
| Q |
67 |
ggtttcaaactctatgaaagaagaaactc |
95 |
Q |
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| T |
3840239 |
ggtttcaaactctatgaaagaagaaactc |
3840267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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