View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15278_low_1 (Length: 745)

Name: NF15278_low_1
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15278_low_1
NF15278_low_1
[»] chr6 (2 HSPs)
chr6 (7-729)||(9538496-9539217)
chr6 (219-269)||(2445291-2445341)
[»] chr5 (1 HSPs)
chr5 (219-285)||(38756722-38756788)
[»] chr7 (2 HSPs)
chr7 (220-287)||(29726793-29726860)
chr7 (230-259)||(26980965-26980994)
[»] chr8 (2 HSPs)
chr8 (233-287)||(13284266-13284320)
chr8 (230-287)||(40167325-40167382)
[»] chr2 (1 HSPs)
chr2 (229-287)||(9547410-9547468)
[»] chr1 (4 HSPs)
chr1 (219-265)||(4896633-4896679)
chr1 (230-264)||(15382843-15382877)
chr1 (231-264)||(5553025-5553058)
chr1 (230-287)||(10841903-10841960)
[»] scaffold0008 (1 HSPs)
scaffold0008 (217-266)||(119559-119608)


Alignment Details
Target: chr6 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 7 - 729
Target Start/End: Complemental strand, 9539217 - 9538496
Alignment:
Q  7 aagaatatgacacttgaaatgnnnnnnntaacacaaggaaatctaaatgtgagtttctaatcttatgcatgagttnnnnnnnn-tagtatatttaaaaaa 105  Q
    ||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  9539217 aagaaaatgacacttgaaatgaaaaaaataacacaaggaaatctaaatgtgagtttctaatcttatgcatgagttaaaaaaaaatagtatatttaaaaaa 9539118  T
Q  106 tcatatttgaacttagttcataatttaaataattgaacaatgttccaacaacattgatatatcactgaaaaatttgtgtgagaagaatctgcaactataa 205  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  9539117 tcatatttgaacttagttcataatttaaataattcaacaatgttccaacaaaattgatatatcattgaaaaatttgtgtgagaagaatctgcaactataa 9539018  T
Q  206 gctgatgcatgtgatgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacctcggtcatcatnnnnnnn 305  Q
     |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||| |||| ||||||||||||||||||            
T  9539017 actgatgcatgtgatgtcctcgaaagcttaactcagttggtataaacaatgtatcatatttataaggtctggggttcaaacctcggtcatca--ctaaaa 9538920  T
Q  306 nntgatacatgtgatagttctccttgtagctactacgacagaatctacatatttcccttatcaaaaaa-tgattgacacatggagaggccttgttataaa 404  Q
      || |||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  9538919 aatggtacatgtgatagttctccttatagctactaccacagaatctaaatatttcccttatcaaaaaaattattgacacatggagaggccttgttataaa 9538820  T
Q  405 agaaaagaatccaaaaattaagtaaaccacacacttcaaaaaatttagtcccattatattcactcttcaactaagttcctttatcaaagcatttaaccac 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9538819 agaaaagaatccaaaaattaagtaaaccacacacttcaaaaaatttagtaccattatattcactcttcaactaagtccctttatcaaagcatttaaccac 9538720  T
Q  505 ttcttcattactctttactcaactctcatacattttttcttctaactttctctccaattctcaaacttaatttcttcacaatcatccatctctcaaatgg 604  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9538719 ttcttcatgactctttactcaactctcatatattttttcttctaacttcctctccaattctcaaacttaatttcttcacaatcatccatct-tcaaatgg 9538621  T
Q  605 atatcaaaattttcattattgcatctatcctaacctcaacattgttctttgttctttacattcccaccaaattaaccataccaacctcaaactatagtcc 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9538620 atatcaaaattttcattattgcatctatcctaacctcaacattgttctttgttctttacattcccaccaaattaaccataccaacctcaaactatagtcc 9538521  T
Q  705 tccaaatccaatgaacaaaaccttc 729  Q
    ||||||||||||||| |||||||||    
T  9538520 tccaaatccaatgaataaaaccttc 9538496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 2445291 - 2445341
Alignment:
Q  219 atgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttaca 269  Q
    ||||||||| |||||||||||||||||||||||||||| || |||| ||||    
T  2445291 atgtcctcgtaagcttaactcagttgatatgaacaatgcataatatataca 2445341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 38756722 - 38756788
Alignment:
Q  219 atgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaa 285  Q
    ||||||||| ||| ||||||||||||||||||| ||||||| |||| |||| |||| ||| ||||||    
T  38756722 atgtcctcgtaagtttaactcagttgatatgaataatgtataatatatacaaggttcggggttcaaa 38756788  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 29726793 - 29726860
Alignment:
Q  220 tgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 287  Q
    ||||||||  |||||||||||||||| ||||||||||||| |||| | || |||| ||| ||||||||    
T  29726793 tgtcctcgtgagcttaactcagttgacatgaacaatgtataatatatgcaaggttcggggttcaaacc 29726860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 26980994 - 26980965
Alignment:
Q  230 agcttaactcagttgatatgaacaatgtat 259  Q
    ||||||||||||||||||||||||||||||    
T  26980994 agcttaactcagttgatatgaacaatgtat 26980965  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 13284320 - 13284266
Alignment:
Q  233 ttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 287  Q
    ||||||||||||||||||||||||||| |||| || | |||||| | ||||||||    
T  13284320 ttaactcagttgatatgaacaatgtataatatatataaggtttgaggttcaaacc 13284266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 40167325 - 40167382
Alignment:
Q  230 agcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 287  Q
    ||||||||||||||| |||| |||||| || |||| |||| |||| ||||||||||||    
T  40167325 agcttaactcagttggtatggacaatgcataatatatacaaggttcgggattcaaacc 40167382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 9547468 - 9547410
Alignment:
Q  229 aagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 287  Q
    ||||||||||||||||||||| |||||| || |||| | || |||||||| ||||||||    
T  9547468 aagcttaactcagttgatatggacaatgcataatatatgcaaggtttggggttcaaacc 9547410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 4896633 - 4896679
Alignment:
Q  219 atgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatt 265  Q
    ||||| ||| ||||||||||||||||||||| ||||||||| |||||    
T  4896633 atgtcttcgtaagcttaactcagttgatatggacaatgtataatatt 4896679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 15382877 - 15382843
Alignment:
Q  230 agcttaactcagttgatatgaacaatgtatcatat 264  Q
    |||||||||||||||||||||||||||||| ||||    
T  15382877 agcttaactcagttgatatgaacaatgtataatat 15382843  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 5553058 - 5553025
Alignment:
Q  231 gcttaactcagttgatatgaacaatgtatcatat 264  Q
    ||||||||||||||||||||||||||||| ||||    
T  5553058 gcttaactcagttgatatgaacaatgtataatat 5553025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 10841903 - 10841960
Alignment:
Q  230 agcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 287  Q
    |||||||||||||||||||| |||||| || |||| || | |||||| ||||||||||    
T  10841903 agcttaactcagttgatatggacaatgcataatatatataaggtttgagattcaaacc 10841960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 119559 - 119608
Alignment:
Q  217 tgatgtcctcgaaagcttaactcagttgatatgaacaatgtatcatattt 266  Q
    |||||||||||  |||||||||||||||||| | ||||||||| ||||||    
T  119559 tgatgtcctcgtgagcttaactcagttgatagggacaatgtataatattt 119608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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