View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15278_low_12 (Length: 322)

Name: NF15278_low_12
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15278_low_12
NF15278_low_12
[»] chr5 (9 HSPs)
chr5 (10-306)||(6833135-6833431)
chr5 (156-305)||(6842367-6842516)
chr5 (12-68)||(19929849-19929905)
chr5 (11-77)||(40899812-40899878)
chr5 (12-77)||(1248758-1248823)
chr5 (12-77)||(2588217-2588282)
chr5 (12-77)||(6315931-6315996)
chr5 (12-68)||(6753932-6753988)
chr5 (12-40)||(41492189-41492217)
[»] chr7 (13 HSPs)
chr7 (12-77)||(759254-759319)
chr7 (12-77)||(25571321-25571386)
chr7 (12-68)||(83294-83350)
chr7 (12-77)||(21390195-21390260)
chr7 (12-77)||(21760147-21760212)
chr7 (12-77)||(38391653-38391718)
chr7 (12-77)||(48608768-48608833)
chr7 (12-77)||(6495096-6495161)
chr7 (12-68)||(40076228-40076284)
chr7 (12-70)||(29398849-29398905)
chr7 (12-58)||(47045628-47045674)
chr7 (12-77)||(11373591-11373656)
chr7 (12-77)||(42935559-42935624)
[»] chr2 (9 HSPs)
chr2 (12-77)||(7494993-7495058)
chr2 (12-74)||(36354596-36354658)
chr2 (12-77)||(34120675-34120740)
chr2 (12-68)||(25637383-25637439)
chr2 (12-70)||(34451486-34451544)
chr2 (12-77)||(14523526-14523591)
chr2 (12-59)||(34120591-34120638)
chr2 (10-77)||(35313781-35313848)
chr2 (12-68)||(17695230-17695287)
[»] chr3 (14 HSPs)
chr3 (12-68)||(17652656-17652712)
chr3 (12-76)||(40194397-40194461)
chr3 (18-77)||(19822905-19822964)
chr3 (12-86)||(37773122-37773196)
chr3 (11-68)||(30190815-30190872)
chr3 (17-89)||(1778267-1778339)
chr3 (12-67)||(38795247-38795303)
chr3 (12-77)||(27471229-27471294)
chr3 (12-77)||(43254020-43254085)
chr3 (12-77)||(53560110-53560175)
chr3 (13-41)||(12736728-12736756)
chr3 (12-68)||(29024116-29024172)
chr3 (12-40)||(30710580-30710608)
chr3 (12-68)||(43715209-43715265)
[»] chr1 (12 HSPs)
chr1 (254-305)||(12532593-12532644)
chr1 (12-75)||(31042693-31042756)
chr1 (12-77)||(16395204-16395269)
chr1 (14-77)||(38787232-38787295)
chr1 (12-77)||(52837176-52837242)
chr1 (12-77)||(43500899-43500964)
chr1 (12-82)||(49224145-49224215)
chr1 (11-72)||(46713034-46713094)
chr1 (12-75)||(6160609-6160673)
chr1 (12-68)||(10495742-10495798)
chr1 (12-64)||(39864018-39864070)
chr1 (12-64)||(44426865-44426917)
[»] chr6 (6 HSPs)
chr6 (12-77)||(29363198-29363263)
chr6 (14-77)||(32440804-32440867)
chr6 (12-77)||(21010065-21010130)
chr6 (11-77)||(31283549-31283615)
chr6 (12-77)||(30716793-30716858)
chr6 (12-76)||(22398238-22398302)
[»] chr4 (13 HSPs)
chr4 (12-84)||(26147780-26147852)
chr4 (14-77)||(49428505-49428568)
chr4 (12-86)||(2066676-2066750)
chr4 (12-75)||(8175752-8175811)
chr4 (12-68)||(16821494-16821550)
chr4 (12-68)||(38405265-38405321)
chr4 (10-47)||(30192177-30192214)
chr4 (12-76)||(36985683-36985745)
chr4 (12-77)||(42517808-42517873)
chr4 (12-77)||(47773181-47773246)
chr4 (12-77)||(52859956-52860021)
chr4 (22-66)||(10754280-10754323)
chr4 (22-66)||(10968049-10968092)
[»] scaffold0110 (1 HSPs)
scaffold0110 (12-77)||(1450-1515)
[»] chr8 (7 HSPs)
chr8 (12-77)||(40996518-40996583)
chr8 (12-77)||(39405656-39405721)
chr8 (12-68)||(32476191-32476247)
chr8 (12-82)||(26626269-26626339)
chr8 (12-77)||(31331214-31331279)
chr8 (12-77)||(32678310-32678375)
chr8 (12-68)||(39301113-39301169)
[»] scaffold0095 (1 HSPs)
scaffold0095 (12-77)||(50098-50163)
[»] scaffold0464 (1 HSPs)
scaffold0464 (12-76)||(5941-6004)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 6833431 - 6833135
Alignment:
Q  10 attattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacggttggaatatcatctattagtttgggcaaaata 109  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  6833431 attattctaaaatgacaattattttgaaacagtgaaaagatagtaaagagacaattattttaagatggttggagtatcatctattagtttggacaaaata 6833332  T
Q  110 aatgacatttatattgcgaaatgtacatataaattaactgaccatgataaattctcaccagttgtaggacataagatggtttgtgttcggtatcaggagt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6833331 aatgacatttatattgcgaaatgtacatataaattaactgaccatgataaattctcaccagttgtaggacataagatggtttgtgttcggtatcaggagt 6833232  T
Q  210 aaaagcagctaagaaaattccaactaaaatttttgtaggaaaattttccattgcaagggctatactcattcctccaaagctatgtcccacaagaact 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6833231 aaaagcagctaagaaaattccaactaaaatttttgtaggaaaattttccattgcaagggctatactcattcctccaaagctatgtcccacaaaaact 6833135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 6842516 - 6842367
Alignment:
Q  156 ataaattctcaccagttgtaggacataagatggtttgtgttcggtatcaggagtaaaagcagctaagaaaattccaactaaaatttttgtaggaaaattt 255  Q
    ||||||| ||||| ||| ||| ||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||  |||||||  |||||| |||    
T  6842516 ataaattatcacctgttctagaacatatgatggtttgtgttgtgtatcaggaataaaagcagctaagaaaattccaacttcaattttttcaggaaatttt 6842417  T
Q  256 tccattgcaagggctatactcattcctccaaagctatgtcccacaagaac 305  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  6842416 tccattgcaagagctatactcattcctccaaagctatgtccaacaagaac 6842367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 19929905 - 19929849
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    |||||||||||||||||||||||| || |  |||||||||||||| |||||||||||    
T  19929905 tattctaaagtgacaattattttgcgaaaaagaaaagatggtaaatagacaattatt 19929849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 40899878 - 40899812
Alignment:
Q  11 ttattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||||||||||||||||||||||||||| |  |||||  || |||||||||||||||| | ||||||    
T  40899878 ttattctaaagtgacaattattttgagaaaaagaaaatttgataaagagacaattattgtgagacgg 40899812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 1248758 - 1248823
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||  || |||||||||||||||| | ||||||    
T  1248758 tattctaaagtgacaattattttgagaaaacgaaaaagtgctaaagagacaattattatgagacgg 1248823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 2588217 - 2588282
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||   |||||||||||||||||| | ||||||    
T  2588217 tattctaaagtgacaattattttgagaaaaagaaaaataggtaaagagacaattattgtgagacgg 2588282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 6315931 - 6315996
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  ||||| ||| | ||||||| |||||| | ||||||    
T  6315931 tattctaaagtgacaattattttgagaaaaagaaaaaatgcttaagagactattattgtgagacgg 6315996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 6753988 - 6753932
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    |||| |||||||||||||||||||||| |  ||||| || | |||||||||||||||    
T  6753988 tattataaagtgacaattattttgagaaaaagaaaaaattgaaaagagacaattatt 6753932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 41492217 - 41492189
Alignment:
Q  12 tattctaaagtgacaattattttgagaca 40  Q
    |||||||||||||||||||||||||||||    
T  41492217 tattctaaagtgacaattattttgagaca 41492189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 759254 - 759319
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| | ||||||    
T  759254 tattctaaagtgacaattattttgagaaaaagaaaagatggtaaagagacaattattgtgagacgg 759319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 25571386 - 25571321
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  ||||| || ||||||||||||||||||| ||||||    
T  25571386 tattctaaagtgacaattattttgagaaaaagaaaaaatagtaaagagacaattattttgagacgg 25571321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 83350 - 83294
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    ||||||||||||||||||||||||||| |  ||||||||||||| ||||||||||||    
T  83350 tattctaaagtgacaattattttgagaaaaagaaaagatggtaatgagacaattatt 83294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 21390260 - 21390195
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||| |||||||||||||||||||||| |  ||||||||| |||||||||||||||| ||| ||||    
T  21390260 tattataaagtgacaattattttgagaaaaagaaaagatgctaaagagacaattattgtaacacgg 21390195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 21760147 - 21760212
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||  ||||||||||||||||||| | ||||||    
T  21760147 tattctaaagtgacaattattttgagaaaaagaaaaactggtaaagagacaattattgtgagacgg 21760212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 38391718 - 38391653
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||| |||||||||||||||||||||| |  ||||| |||||||||||||||||||| | ||||||    
T  38391718 tattataaagtgacaattattttgagaaaaagaaaaaatggtaaagagacaattattgtgagacgg 38391653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 48608833 - 48608768
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||| |||||||||||||||||||||| |  |||||||||||||||||||| ||||| | ||||||    
T  48608833 tattttaaagtgacaattattttgagaaaaagaaaagatggtaaagagacagttattatgagacgg 48608768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 6495096 - 6495161
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||   |||||||||||||||||| | ||||||    
T  6495096 tattctaaagtgacaattattttgagaaaaagaaaaatgggtaaagagacaattattatgagacgg 6495161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 40076284 - 40076228
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    |||| |||||||||||||||||||||| |  ||||| ||||||||||||| ||||||    
T  40076284 tattataaagtgacaattattttgagaaaaagaaaaaatggtaaagagactattatt 40076228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 29398905 - 29398849
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatttt 70  Q
    |||||||||| ||||||||||||||||||  ||||| ||| ||||||||||| ||||||    
T  29398905 tattctaaagagacaattattttgagaca--gaaaaaatgataaagagacaagtatttt 29398849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 47045628 - 47045674
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaaga 58  Q
    ||||||||||||||||||||||||||| || ||||| ||| ||||||    
T  47045628 tattctaaagtgacaattattttgagatagagaaaaaatgttaaaga 47045674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 11373591 - 11373656
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||| |||||| ||||||||||||||| |  ||||| |||||||||||||||| ||| | ||||||    
T  11373591 tattgtaaagtaacaattattttgagaaaaagaaaaaatggtaaagagacaataattgtgagacgg 11373656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 42935624 - 42935559
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||   |||||| ||||||||||| | ||||||    
T  42935624 tattctaaagtgacaattattttgagaaaaagaaaaatgggtaaaaagacaattattgtgagacgg 42935559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 7494993 - 7495058
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| | ||||||    
T  7494993 tattctaaagtgacaattattttgagaaaaagaaaagatggtaaagagacaattattgtgagacgg 7495058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 36354596 - 36354658
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaaga 74  Q
    ||||||||||||||||||||||||||| |  ||||| ||| |||||||||||||||| |||||    
T  36354596 tattctaaagtgacaattattttgagaaaaagaaaaaatgataaagagacaattattgtaaga 36354658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 34120675 - 34120740
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||| |||||||||||||||||||||| |  ||||||||||||||||| |||||||| | ||||||    
T  34120675 tattttaaagtgacaattattttgagaaaaagaaaagatggtaaagaggcaattattgtgagacgg 34120740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 25637439 - 25637383
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    ||||||||||||||||||||||||||| |  | ||| ||||||||||||||||||||    
T  25637439 tattctaaagtgacaattattttgagaaaaagtaaaaatggtaaagagacaattatt 25637383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 34451486 - 34451544
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatttt 70  Q
    ||||||||||||||||||||||||||| ||  |||| ||  ||||||||||||||||||    
T  34451486 tattctaaagtgacaattattttgagatagaaaaaaaatactaaagagacaattatttt 34451544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 14523526 - 14523591
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||  || |||||||||||||||| | ||||||    
T  14523526 tattctaaagtgacaattattttgagaaaaagaaaaagtgttaaagagacaattattatgagacgg 14523591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 34120591 - 34120638
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagag 59  Q
    |||| |||||||||||||||||||||| |  |||||||||||||||||    
T  34120591 tattttaaagtgacaattattttgagaaaaagaaaagatggtaaagag 34120638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 35313848 - 35313781
Alignment:
Q  10 attattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||||| |||||||||||||||||||||| |  ||||| ||| |||||||||||| ||| | ||||||    
T  35313848 attattgtaaagtgacaattattttgagaaaaagaaaaaatgttaaagagacaataattgtgagacgg 35313781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 17695287 - 17695230
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtg-aaaagatggtaaagagacaattatt 68  Q
    ||||||||||||||||||||||||||| |  | |||| ||||||||||||| ||||||    
T  17695287 tattctaaagtgacaattattttgagaaaaagaaaaaaatggtaaagagactattatt 17695230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 17652712 - 17652656
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  17652712 tattctaaagtgacaattattttgagaaaaagaaaagatggtaaagagacaattatt 17652656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 40194461 - 40194397
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacg 76  Q
    ||||||||| ||||||||||||| |||||| ||||| ||| |||||| |||||||||||||||||    
T  40194461 tattctaaattgacaattattttaagacagagaaaaaatgataaagaaacaattattttaagacg 40194397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 19822964 - 19822905
Alignment:
Q  18 aaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||| |  ||||| || ||||||||||||||||| ||||||||    
T  19822964 aaagtgacaattattttgagaaaaagaaaaaattgtaaagagacaattattgtaagacgg 19822905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 37773122 - 37773196
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacggttggaatat 86  Q
    |||| |||||||||||||||||||||| |  |||||  || |||||||||||||||| | |||||| ||||||||    
T  37773122 tattgtaaagtgacaattattttgagaaaaagaaaaattgctaaagagacaattattgtgagacggatggaatat 37773196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 30190815 - 30190872
Alignment:
Q  11 ttattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    |||||||||||||||||||||||||||| |  |||||  || ||||||||||||||||    
T  30190815 ttattctaaagtgacaattattttgagaaaaagaaaaagtgctaaagagacaattatt 30190872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 1778339 - 1778267
Alignment:
Q  17 taaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacggttggaatatcat 89  Q
    |||||||||||||||||||||| |  ||||| ||| |||||||||||| ||  | |||||| |||||||||||    
T  1778339 taaagtgacaattattttgagaaaaagaaaaaatgctaaagagacaataatcgtgagacggatggaatatcat 1778267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 38795303 - 38795247
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtg-aaaagatggtaaagagacaattat 67  Q
    |||||||||||||||||||||||||||||  | |||| ||| |||||||||||||||    
T  38795303 tattctaaagtgacaattattttgagacaaagaaaaaaatgctaaagagacaattat 38795247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 27471294 - 27471229
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||| |||||||||||||||||||||| |  ||||| ||| |||||||||||| ||| | ||||||    
T  27471294 tattataaagtgacaattattttgagaaaaagaaaaaatgctaaagagacaataattgtgagacgg 27471229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 43254020 - 43254085
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||| |||||||||||||||||||||| |  ||||| ||| |||||||||||| ||| | ||||||    
T  43254020 tattgtaaagtgacaattattttgagaaatagaaaaaatgctaaagagacaataattgtgagacgg 43254085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 53560175 - 53560110
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||   |||||| ||||||||||| | ||||||    
T  53560175 tattctaaagtgacaattattttgagaaaaagaaaaatgggtaaaaagacaattattgtgagacgg 53560110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 12736728 - 12736756
Alignment:
Q  13 attctaaagtgacaattattttgagacag 41  Q
    |||||||||||||||||||||||||||||    
T  12736728 attctaaagtgacaattattttgagacag 12736756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 29024116 - 29024172
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    ||||||||||||||||||||||| ||| |  |||||   ||||||||||||||||||    
T  29024116 tattctaaagtgacaattattttaagaaaaagaaaattgggtaaagagacaattatt 29024172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 30710608 - 30710580
Alignment:
Q  12 tattctaaagtgacaattattttgagaca 40  Q
    |||||||||||||||||||||||||||||    
T  30710608 tattctaaagtgacaattattttgagaca 30710580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 43715265 - 43715209
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    ||||||||||||||||||||||||||| |   |||| ||| ||||||||||| ||||    
T  43715265 tattctaaagtgacaattattttgagaaaaataaaaaatgttaaagagacaaatatt 43715209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 12532593 - 12532644
Alignment:
Q  254 tttccattgcaagggctatactcattcctccaaagctatgtcccacaagaac 305  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  12532593 tttccattgcaagagctatactcattcctccaaagctatgtccaacaagaac 12532644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 31042756 - 31042693
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagac 75  Q
    ||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||| ||||||    
T  31042756 tattctaaagtgacaattattttgagaaagagaaaaaatgataaagagacaattattgtaagac 31042693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 16395204 - 16395269
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  ||||||  |||||||||||||||||| | ||||||    
T  16395204 tattctaaagtgacaattattttgagaaaaagaaaagtgggtaaagagacaattattgtgagacgg 16395269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 38787295 - 38787232
Alignment:
Q  14 ttctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||| |   |||| |||||||||||||||||||| | ||||||    
T  38787295 ttctaaagtgacaattattttgagaaaaataaaaaatggtaaagagacaattattgtgagacgg 38787232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 52837242 - 52837176
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaaga-tggtaaagagacaattattttaagacgg 77  Q
    |||| ||||||| ||||||||||||||||  ||||| | || |||||||||||||||||||||||||    
T  52837242 tattataaagtggcaattattttgagacatagaaaaaaatgttaaagagacaattattttaagacgg 52837176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 43500899 - 43500964
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |    ||| |||||||||||||||||||| | ||||||    
T  43500899 tattctaaagtgacaattattttgagaaaaaataaaaatggtaaagagacaattattgtgagacgg 43500964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 49224145 - 49224215
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacggttgga 82  Q
    ||||||||||||||||||||||||||| |  |||||   |||||| ||||||||||| | |||||| ||||    
T  49224145 tattctaaagtgacaattattttgagaaaaagaaaaatgggtaaaaagacaattattgtgagacggatgga 49224215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 46713034 - 46713094
Alignment:
Q  11 ttattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaa 72  Q
    |||||| ||||||||||||||||||||||||  |||| ||  |||| |||||||||||||||    
T  46713034 ttattcgaaagtgacaattattttgagacag-aaaaaaatattaaatagacaattattttaa 46713094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 6160609 - 6160673
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaaga-tggtaaagagacaattattttaagac 75  Q
    ||||||||| |||||||||||||||||||| ||||| | ||   |||| ||||||||||||||||    
T  6160609 tattctaaaatgacaattattttgagacagagaaaaaaatgccgaagaaacaattattttaagac 6160673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 10495798 - 10495742
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    |||| |||||||||||||||||||||| |  |||||  ||||||| |||||||||||    
T  10495798 tattataaagtgacaattattttgagaaaaagaaaaagtggtaaaaagacaattatt 10495742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 39864070 - 39864018
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaat 64  Q
    |||| |||||||||||||||||||||  | |||||| ||| ||||||||||||    
T  39864070 tattgtaaagtgacaattattttgaggaaatgaaaaaatgctaaagagacaat 39864018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 44426865 - 44426917
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaat 64  Q
    ||||||||||||||||| |||||||||||| |||||  || ||||| ||||||    
T  44426865 tattctaaagtgacaataattttgagacagagaaaaagtgctaaagtgacaat 44426917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 29363263 - 29363198
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||||| |||||||||||||||||||| |  |||||||||||||||||||||||||| | ||||||    
T  29363263 tattctgaagtgacaattattttgagaaaaagaaaagatggtaaagagacaattattgtgagacgg 29363198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 32440804 - 32440867
Alignment:
Q  14 ttctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||| |  ||||| |||||||||||||||||||| | ||||||    
T  32440804 ttctaaagtgacaattattttgagaaaaagaaaaaatggtaaagagacaattattgtgagacgg 32440867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 21010130 - 21010065
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||| |||||||||||||||||||||| |  ||||| |||||||| ||||||||||| | ||||||    
T  21010130 tattataaagtgacaattattttgagaaaaagaaaaaatggtaaaaagacaattattatgagacgg 21010065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 31283549 - 31283615
Alignment:
Q  11 ttattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||| |||||||| ||||||||||||| |   |||| |||||||||||||||||||| | ||||||    
T  31283549 ttattttaaagtgataattattttgagaaaaataaaaaatggtaaagagacaattattgtgagacgg 31283615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 30716858 - 30716793
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||   |||||| ||||||||||| | ||||||    
T  30716858 tattctaaagtgacaattattttgagaaaaagaaaaatgggtaaaaagacaattattgtgagacgg 30716793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 22398302 - 22398238
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacg 76  Q
    ||||||||| |||| ||||||||||||| |  ||||  || |||||||||||||||||| |||||    
T  22398302 tattctaaattgactattattttgagaccgaaaaaaattgataaagagacaattattttgagacg 22398238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 26147780 - 26147852
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacggttggaat 84  Q
    ||||||||||||||||||||||||||| |  ||||| ||| |||||||||||||||| | |||||| ||||||    
T  26147780 tattctaaagtgacaattattttgagaaaaagaaaaaatgataaagagacaattattgtgagacggatggaat 26147852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 49428505 - 49428568
Alignment:
Q  14 ttctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||| |  ||||| |||||||||||||||||||| | ||||||    
T  49428505 ttctaaagtgacaattattttgagaaaaagaaaaaatggtaaagagacaattattgtgagacgg 49428568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 2066750 - 2066676
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacggttggaatat 86  Q
    ||||||||||||||||||||||||||| |  ||||| || ||||||||| ||||||| | |||||  ||||||||    
T  2066750 tattctaaagtgacaattattttgagaaaaagaaaaaatagtaaagagataattattgtgagacgaatggaatat 2066676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 8175752 - 8175811
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagac 75  Q
    ||||||||||||||||| ||||||||||||   ||| ||| |||||||||||||||||||||||    
T  8175752 tattctaaagtgacaat-attttgagacag---aaaaatgttaaagagacaattattttaagac 8175811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 16821494 - 16821550
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    ||||||||||||||||||||||| | | || ||||| ||| ||||||||||||||||    
T  16821494 tattctaaagtgacaattattttaacaaagagaaaaaatgttaaagagacaattatt 16821550  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 38405265 - 38405321
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    ||||||||||||||||||||||||||| |  ||||| |||||||| | |||||||||    
T  38405265 tattctaaagtgacaattattttgagaaaaagaaaaaatggtaaaaaaacaattatt 38405321  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 30192214 - 30192177
Alignment:
Q  10 attattctaaagtgacaattattttgagacagtgaaaa 47  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  30192214 attattctaaagtgacaattattttaagacagagaaaa 30192177  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 36985745 - 36985683
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacg 76  Q
    ||||||||| |||||||||||||||||| | ||||| ||| |  ||||||||||||||| |||||    
T  36985745 tattctaaactgacaattattttgagactgagaaaaaatgtt--agagacaattattttgagacg 36985683  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 42517808 - 42517873
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||| |||||||||||||||||| ||| |  ||||| ||| |||||| ||||||||| ||||||||    
T  42517808 tattttaaagtgacaattatttttagaaaaagaaaaaatgataaagaaacaattattgtaagacgg 42517873  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 47773181 - 47773246
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||   |||||| ||||||||||| | ||||||    
T  47773181 tattctaaagtgacaattattttgagaaaaagaaaaatgggtaaaaagacaattattgtgagacgg 47773246  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 52859956 - 52860021
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  |||||   ||||||| |||||||||| | ||||||    
T  52859956 tattctaaagtgacaattattttgagaaaaagaaaaatgggtaaagggacaattattatgagacgg 52860021  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 10754323 - 10754280
Alignment:
Q  22 tgacaattattttgagacagtgaaaagatggtaaagagacaatta 66  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||    
T  10754323 tgacaattattttgagacagagaaaa-atgttaaagagacaatta 10754280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 10968092 - 10968049
Alignment:
Q  22 tgacaattattttgagacagtgaaaagatggtaaagagacaatta 66  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||    
T  10968092 tgacaattattttgagacagagaaaa-atgttaaagagacaatta 10968049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 1515 - 1450
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||| ||| |  ||||| |||||||||||||||||||| | ||||||    
T  1515 tattctaaagtgacaattattttaagaaaaagaaaaaatggtaaagagacaattattgtgagacgg 1450  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 40996518 - 40996583
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||||| |  ||||| |||||||||| ||||||||| | ||||||    
T  40996518 tattctaaagtgacaattattttgagaaaaagaaaaaatggtaaagaaacaattattgtgagacgg 40996583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 39405721 - 39405656
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||| | ||  |||| ||| |||||||||||||||| | ||||||    
T  39405721 tattctaaagtgacaattattttgacaaagaaaaaaaatgctaaagagacaattattatgagacgg 39405656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 32476247 - 32476191
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    ||||||||||||||||||||||||||| |  ||||| ||| ||||||||| ||||||    
T  32476247 tattctaaagtgacaattattttgagaaaaagaaaaaatgctaaagagactattatt 32476191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 26626269 - 26626339
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatgg-taaagagacaattattttaagacggttgga 82  Q
    |||| |||||||||||||||||||||| |  ||||| |||| |||||||||||||||||| |||||| ||||    
T  26626269 tattttaaagtgacaattattttgagaaaaagaaaa-atggataaagagacaattattttgagacggatgga 26626339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 31331279 - 31331214
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||| ||| |||   |||| || ||||||| || |||||||||||||||    
T  31331279 tattctaaagtgacaattattctgaaacatgaaaaaaatagtaaagaaacgattattttaagacgg 31331214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 32678375 - 32678310
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    |||| |||||||||||||||||| ||| |  ||||| |||||||||| ||||||||| | ||||||    
T  32678375 tattttaaagtgacaattattttaagaaaaagaaaaaatggtaaagaaacaattattgtgagacgg 32678310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 39301113 - 39301169
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattatt 68  Q
    ||||||||| ||||||||||||||||| |   |||||||| |||| |||||||||||    
T  39301113 tattctaaaatgacaattattttgagagaaaaaaaagatgataaaaagacaattatt 39301169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 50163 - 50098
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacgg 77  Q
    ||||||||||||||||||||||||| | ||  |||| ||| |||||||||||||||| | ||||||    
T  50163 tattctaaagtgacaattattttgacaaagaaaaaaaatgctaaagagacaattattatgagacgg 50098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 6004 - 5941
Alignment:
Q  12 tattctaaagtgacaattattttgagacagtgaaaagatggtaaagagacaattattttaagacg 76  Q
    ||||||||||||| |||||||||||||||  ||||| ||  |||||| ||||||||||| |||||    
T  6004 tattctaaagtgataattattttgagacaaagaaaa-atcttaaagaaacaattattttgagacg 5941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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