View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15278_low_13 (Length: 310)

Name: NF15278_low_13
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15278_low_13
NF15278_low_13
[»] chr3 (50 HSPs)
chr3 (187-306)||(9624980-9625099)
chr3 (187-306)||(10959130-10959249)
chr3 (187-306)||(27183660-27183779)
chr3 (187-306)||(7448342-7448461)
chr3 (187-306)||(7456484-7456603)
chr3 (187-289)||(14868682-14868784)
chr3 (187-306)||(24559386-24559505)
chr3 (183-278)||(36331733-36331828)
chr3 (187-306)||(36476356-36476475)
chr3 (187-286)||(52030118-52030217)
chr3 (187-278)||(3955303-3955396)
chr3 (187-271)||(47191370-47191454)
chr3 (183-306)||(3784063-3784186)
chr3 (212-297)||(362965-363050)
chr3 (199-306)||(44671480-44671585)
chr3 (213-307)||(35140742-35140836)
chr3 (187-285)||(44976571-44976668)
chr3 (199-286)||(28226186-28226273)
chr3 (187-233)||(12236597-12236642)
chr3 (187-249)||(16874226-16874287)
chr3 (196-278)||(22854601-22854683)
chr3 (183-289)||(43598792-43598897)
chr3 (187-232)||(39298020-39298065)
chr3 (188-249)||(46879999-46880059)
chr3 (211-271)||(14417889-14417949)
chr3 (187-255)||(28550321-28550388)
chr3 (187-271)||(33206755-33206838)
chr3 (187-271)||(43774182-43774266)
chr3 (211-271)||(45713501-45713561)
chr3 (211-275)||(49146105-49146169)
chr3 (183-274)||(3993718-3993808)
chr3 (211-270)||(15498227-15498286)
chr3 (196-271)||(23237369-23237443)
chr3 (211-270)||(23820650-23820709)
chr3 (187-306)||(38555007-38555125)
chr3 (187-233)||(6951842-6951887)
chr3 (187-249)||(19137617-19137678)
chr3 (211-257)||(20244155-20244201)
chr3 (190-276)||(45118644-45118729)
chr3 (183-239)||(3973296-3973351)
chr3 (183-239)||(3996525-3996580)
chr3 (183-271)||(4010032-4010119)
chr3 (187-271)||(16277965-16278048)
chr3 (211-271)||(17439979-17440039)
chr3 (187-255)||(24303391-24303458)
chr3 (211-255)||(24751290-24751334)
chr3 (211-271)||(32876130-32876190)
chr3 (187-255)||(42271043-42271110)
chr3 (211-239)||(47427746-47427774)
chr3 (187-271)||(49639026-49639109)
[»] chr1 (46 HSPs)
chr1 (187-306)||(47763364-47763483)
chr1 (187-289)||(39238713-39238815)
chr1 (128-289)||(29106864-29107026)
chr1 (187-306)||(25819182-25819301)
chr1 (187-306)||(52833085-52833204)
chr1 (187-286)||(38021249-38021348)
chr1 (187-306)||(40678820-40678939)
chr1 (187-289)||(17350058-17350160)
chr1 (189-306)||(13870060-13870177)
chr1 (187-277)||(29491467-29491557)
chr1 (187-289)||(19976548-19976650)
chr1 (187-289)||(35111647-35111748)
chr1 (192-289)||(17954855-17954952)
chr1 (187-255)||(2052712-2052780)
chr1 (187-237)||(25162709-25162759)
chr1 (187-245)||(30632424-30632482)
chr1 (187-233)||(9527423-9527469)
chr1 (212-270)||(24014623-24014681)
chr1 (187-269)||(42908769-42908850)
chr1 (187-248)||(38019985-38020045)
chr1 (187-271)||(9768823-9768906)
chr1 (211-275)||(15368826-15368890)
chr1 (183-255)||(16997261-16997332)
chr1 (211-271)||(19793547-19793607)
chr1 (211-271)||(21884596-21884656)
chr1 (211-275)||(23463996-23464060)
chr1 (211-274)||(2208649-2208712)
chr1 (196-271)||(3341750-3341824)
chr1 (189-271)||(195044-195125)
chr1 (213-271)||(538343-538401)
chr1 (189-271)||(4354119-4354200)
chr1 (187-233)||(5172654-5172699)
chr1 (211-249)||(11907338-11907376)
chr1 (199-257)||(47141834-47141891)
chr1 (191-233)||(47939250-47939292)
chr1 (184-249)||(52426921-52426985)
chr1 (187-255)||(6893239-6893306)
chr1 (183-255)||(11333661-11333732)
chr1 (183-255)||(11491682-11491753)
chr1 (187-239)||(18003814-18003865)
chr1 (211-271)||(37733776-37733836)
chr1 (215-271)||(39433383-39433439)
chr1 (187-271)||(41677058-41677141)
chr1 (211-271)||(46116188-46116248)
chr1 (187-255)||(47469075-47469142)
chr1 (187-255)||(52961112-52961179)
[»] chr5 (35 HSPs)
chr5 (188-306)||(4674794-4674912)
chr5 (189-289)||(1463870-1463970)
chr5 (187-306)||(6447459-6447578)
chr5 (187-290)||(36045129-36045232)
chr5 (187-306)||(20735154-20735273)
chr5 (187-278)||(37303931-37304022)
chr5 (196-306)||(30733126-30733236)
chr5 (187-289)||(37417126-37417227)
chr5 (187-275)||(42618423-42618511)
chr5 (214-278)||(10943740-10943804)
chr5 (189-271)||(29096322-29096403)
chr5 (211-249)||(29106074-29106112)
chr5 (199-255)||(9408980-9409036)
chr5 (211-255)||(42455424-42455468)
chr5 (191-270)||(10106632-10106710)
chr5 (187-278)||(18101956-18102046)
chr5 (216-271)||(37986881-37986936)
chr5 (187-233)||(6806692-6806738)
chr5 (187-233)||(9963413-9963459)
chr5 (187-233)||(35813294-35813339)
chr5 (187-232)||(5156894-5156939)
chr5 (187-276)||(18872519-18872607)
chr5 (188-249)||(23155895-23155955)
chr5 (188-269)||(29841347-29841427)
chr5 (188-221)||(32200476-32200509)
chr5 (215-271)||(2867630-2867685)
chr5 (187-255)||(4067983-4068050)
chr5 (211-271)||(7234886-7234946)
chr5 (242-306)||(18303057-18303121)
chr5 (187-271)||(19059018-19059101)
chr5 (211-271)||(20945905-20945965)
chr5 (211-271)||(32158428-32158488)
chr5 (211-271)||(33141803-33141863)
chr5 (211-271)||(33800914-33800974)
chr5 (190-270)||(38040267-38040345)
[»] chr8 (31 HSPs)
chr8 (187-306)||(2800016-2800135)
chr8 (187-306)||(2696530-2696649)
chr8 (187-306)||(10292349-10292468)
chr8 (183-297)||(7314726-7314840)
chr8 (196-306)||(35301142-35301252)
chr8 (189-289)||(1588766-1588866)
chr8 (187-306)||(38790551-38790671)
chr8 (186-306)||(22426397-22426517)
chr8 (187-290)||(36815459-36815561)
chr8 (199-289)||(10310291-10310381)
chr8 (199-296)||(5323931-5324028)
chr8 (187-286)||(31129302-31129398)
chr8 (187-271)||(14012609-14012693)
chr8 (187-271)||(15042379-15042462)
chr8 (215-271)||(17987463-17987519)
chr8 (187-270)||(39484385-39484467)
chr8 (199-278)||(17110313-17110391)
chr8 (187-249)||(9524955-9525016)
chr8 (211-289)||(18009711-18009789)
chr8 (187-233)||(21133571-21133617)
chr8 (187-249)||(24608519-24608580)
chr8 (213-306)||(14683900-14683992)
chr8 (184-249)||(23858195-23858259)
chr8 (201-306)||(35253803-35253907)
chr8 (188-249)||(43847701-43847761)
chr8 (183-223)||(171234-171274)
chr8 (187-255)||(2792780-2792847)
chr8 (215-271)||(4798555-4798611)
chr8 (187-275)||(9737370-9737457)
chr8 (264-304)||(10328477-10328517)
chr8 (187-255)||(17980280-17980347)
[»] chr4 (61 HSPs)
chr4 (187-306)||(28520710-28520829)
chr4 (187-306)||(9692959-9693078)
chr4 (187-306)||(14149790-14149909)
chr4 (187-306)||(48968189-48968308)
chr4 (187-306)||(53815693-53815812)
chr4 (188-306)||(8690212-8690330)
chr4 (187-303)||(46799405-46799520)
chr4 (187-289)||(36954133-36954236)
chr4 (187-289)||(52031204-52031306)
chr4 (187-306)||(15640422-15640541)
chr4 (183-278)||(20610733-20610827)
chr4 (187-306)||(40150470-40150589)
chr4 (187-278)||(42411461-42411552)
chr4 (187-269)||(20166314-20166395)
chr4 (196-306)||(27296828-27296938)
chr4 (187-248)||(2565258-2565319)
chr4 (187-271)||(36008272-36008356)
chr4 (188-275)||(34773693-34773779)
chr4 (188-275)||(35031382-35031468)
chr4 (187-278)||(36257692-36257782)
chr4 (209-286)||(11872892-11872970)
chr4 (196-278)||(31480277-31480359)
chr4 (187-285)||(34106599-34106696)
chr4 (211-271)||(3465604-3465664)
chr4 (187-271)||(47017960-47018043)
chr4 (189-296)||(5909772-5909873)
chr4 (219-278)||(7768795-7768854)
chr4 (187-270)||(21476096-21476178)
chr4 (183-233)||(9084752-9084802)
chr4 (187-249)||(41492534-41492595)
chr4 (187-233)||(48512196-48512242)
chr4 (189-255)||(56531266-56531332)
chr4 (186-271)||(32885685-32885769)
chr4 (189-306)||(48501637-48501754)
chr4 (211-271)||(35333002-35333062)
chr4 (211-271)||(45350297-45350357)
chr4 (211-271)||(45359776-45359836)
chr4 (211-271)||(49089291-49089351)
chr4 (187-271)||(54854193-54854276)
chr4 (187-255)||(55055917-55055984)
chr4 (187-270)||(27921894-27921976)
chr4 (187-234)||(30152125-30152172)
chr4 (196-231)||(41540600-41540635)
chr4 (225-296)||(52330898-52330969)
chr4 (211-278)||(56546456-56546523)
chr4 (225-271)||(2304352-2304398)
chr4 (187-233)||(12820457-12820503)
chr4 (187-233)||(30615995-30616041)
chr4 (211-249)||(35803129-35803167)
chr4 (264-306)||(46799570-46799612)
chr4 (186-255)||(3544462-3544530)
chr4 (200-249)||(6481620-6481668)
chr4 (211-268)||(53697997-53698054)
chr4 (211-239)||(4722510-4722538)
chr4 (187-255)||(11375891-11375958)
chr4 (190-238)||(17431378-17431425)
chr4 (188-232)||(35832089-35832133)
chr4 (183-255)||(42044048-42044119)
chr4 (215-287)||(46222890-46222962)
chr4 (187-271)||(49039459-49039542)
chr4 (187-255)||(51890798-51890865)
[»] scaffold0308 (1 HSPs)
scaffold0308 (187-306)||(7073-7192)
[»] chr6 (22 HSPs)
chr6 (187-306)||(14981681-14981800)
chr6 (187-289)||(24470387-24470489)
chr6 (187-306)||(9064863-9064982)
chr6 (187-288)||(6143962-6144062)
chr6 (187-271)||(12089095-12089178)
chr6 (187-255)||(28970165-28970232)
chr6 (187-270)||(32057032-32057114)
chr6 (187-270)||(3448349-3448432)
chr6 (216-271)||(24256942-24256997)
chr6 (187-233)||(2945593-2945639)
chr6 (187-249)||(5134470-5134532)
chr6 (187-289)||(33628937-33629036)
chr6 (211-271)||(10377138-10377198)
chr6 (190-238)||(14948831-14948878)
chr6 (190-306)||(29284118-29284234)
chr6 (211-271)||(30566079-30566139)
chr6 (212-255)||(34396105-34396148)
chr6 (211-285)||(21507201-21507275)
chr6 (211-271)||(9491749-9491809)
chr6 (207-255)||(11636680-11636728)
chr6 (190-278)||(32540958-32541045)
chr6 (187-239)||(34524873-34524924)
[»] chr2 (35 HSPs)
chr2 (187-289)||(21970435-21970537)
chr2 (187-289)||(29034973-29035075)
chr2 (187-306)||(34034348-34034466)
chr2 (196-289)||(32527073-32527166)
chr2 (187-306)||(2304287-2304406)
chr2 (184-286)||(44187698-44187800)
chr2 (187-248)||(41195979-41196040)
chr2 (190-306)||(43870953-43871069)
chr2 (187-278)||(44487774-44487864)
chr2 (187-271)||(580797-580880)
chr2 (187-275)||(2935814-2935902)
chr2 (187-271)||(11133073-11133157)
chr2 (187-275)||(17115554-17115641)
chr2 (187-271)||(30474209-30474292)
chr2 (187-306)||(7086251-7086369)
chr2 (183-278)||(14307701-14307795)
chr2 (211-306)||(44422128-44422223)
chr2 (199-271)||(3037636-3037708)
chr2 (200-272)||(3955922-3955994)
chr2 (211-275)||(16028118-16028182)
chr2 (211-271)||(17154670-17154730)
chr2 (189-249)||(20684271-20684330)
chr2 (187-271)||(36520794-36520877)
chr2 (188-271)||(22297466-22297548)
chr2 (199-230)||(39086723-39086754)
chr2 (187-274)||(39334892-39334978)
chr2 (187-249)||(5521228-5521289)
chr2 (196-262)||(24586654-24586719)
chr2 (187-233)||(29664600-29664646)
chr2 (183-248)||(5029137-5029201)
chr2 (208-249)||(17974848-17974889)
chr2 (187-271)||(8234806-8234889)
chr2 (187-255)||(20122505-20122572)
chr2 (211-286)||(32943360-32943436)
chr2 (211-275)||(36665451-36665515)
[»] chr7 (34 HSPs)
chr7 (187-304)||(31475821-31475938)
chr7 (196-290)||(8742655-8742749)
chr7 (196-290)||(19126743-19126837)
chr7 (187-289)||(24304279-24304381)
chr7 (187-289)||(41139084-41139186)
chr7 (187-271)||(21285367-21285451)
chr7 (187-289)||(14818361-14818463)
chr7 (187-289)||(15265359-15265461)
chr7 (189-271)||(38451862-38451944)
chr7 (196-276)||(20527438-20527518)
chr7 (211-306)||(24396966-24397061)
chr7 (187-286)||(41417274-41417373)
chr7 (187-271)||(29658286-29658370)
chr7 (187-271)||(34948104-34948187)
chr7 (183-270)||(32814821-32814907)
chr7 (190-271)||(23685568-23685648)
chr7 (211-268)||(38778696-38778753)
chr7 (187-271)||(4169073-4169157)
chr7 (187-255)||(7465464-7465531)
chr7 (211-271)||(22965972-22966032)
chr7 (187-271)||(35195841-35195924)
chr7 (183-242)||(17305433-17305491)
chr7 (187-249)||(22660738-22660800)
chr7 (197-278)||(9351042-9351122)
chr7 (190-271)||(27047729-27047809)
chr7 (209-278)||(37449517-37449586)
chr7 (211-255)||(21086125-21086169)
chr7 (187-255)||(30566500-30566568)
chr7 (211-271)||(30644190-30644250)
chr7 (211-275)||(31694091-31694155)
chr7 (187-271)||(36315988-36316071)
chr7 (217-269)||(41853541-41853593)
chr7 (211-255)||(44437855-44437899)
chr7 (211-271)||(45011672-45011732)
[»] scaffold0070 (1 HSPs)
scaffold0070 (189-289)||(12564-12664)
[»] scaffold0809 (1 HSPs)
scaffold0809 (187-289)||(4802-4903)
[»] scaffold0036 (1 HSPs)
scaffold0036 (187-270)||(25023-25106)
[»] scaffold0009 (1 HSPs)
scaffold0009 (196-278)||(108368-108450)
[»] scaffold1086 (1 HSPs)
scaffold1086 (211-271)||(2509-2569)
[»] scaffold0112 (1 HSPs)
scaffold0112 (187-303)||(17913-18029)
[»] scaffold0178 (2 HSPs)
scaffold0178 (188-275)||(4322-4408)
scaffold0178 (211-280)||(16086-16155)
[»] scaffold0168 (1 HSPs)
scaffold0168 (187-278)||(34040-34130)
[»] scaffold0002 (1 HSPs)
scaffold0002 (187-270)||(451390-451473)
[»] scaffold0712 (1 HSPs)
scaffold0712 (183-233)||(4514-4563)
[»] scaffold0709 (1 HSPs)
scaffold0709 (183-233)||(4534-4583)
[»] scaffold0219 (1 HSPs)
scaffold0219 (183-240)||(21009-21065)
[»] scaffold0765 (1 HSPs)
scaffold0765 (211-271)||(765-825)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 9624980 - 9625099
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  9624980 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 9625079  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||| |||||||    
T  9625080 ctagccactagactacctga 9625099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 10959130 - 10959249
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| ||||||||||||||||||||||  || |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  10959130 ccgtgagcatagctcagttggcagggacaatgcattattatatataggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 10959229  T
Q  287 ctaatcactagaatacctga 306  Q
    ||| |||||||| |||||||    
T  10959230 ctagtcactagactacctga 10959249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 27183779 - 27183660
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  27183779 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 27183680  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  27183679 ctagccactaggctacctga 27183660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 7448461 - 7448342
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||| |||||   ||||||| || |||| |||| |||||||||| |||||| |||||    
T  7448461 ccgtgagcatagctcagttgatagggacaatgcattattatatgcaggggccgggattcgaaccccagataccccacttattcacttcaaaagtgaattt 7448362  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||| |||||||    
T  7448361 ctagccactagactacctga 7448342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 7456603 - 7456484
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||| |||||   ||||||| || |||| |||| |||||||||| |||||| |||||    
T  7456603 ccgtgagcatagctcagttgatagggacaatgcattattatatgcaggggccgggattcgaaccccagataccccacttattcacttcaaaagtgaattt 7456504  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||| |||||||    
T  7456503 ctagccactagactacctga 7456484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 14868682 - 14868784
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| ||| | | |||| ||||||||||||||||| || ||    
T  14868682 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccgaacaccccacttattcactttaaaagtgaaatt 14868781  T
Q  287 cta 289  Q
    |||    
T  14868782 cta 14868784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 24559386 - 24559505
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||  |||||| ||||||| ||||||||||| || ||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  24559386 ccgtgagcatagctcagttagcagggataatgcataattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 24559485  T
Q  287 ctaatcactagaatacctga 306  Q
    |||| ||||||  |||||||    
T  24559486 ctaaccactaggttacctga 24559505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 36331828 - 36331733
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||||||| ||||||| ||| |||||||||||||||||||||||||| || ||  |||||||| ||||| | |||| |||||||||||||||    
T  36331828 gtctccgtgagcatagctcaattggcagggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttaaaa 36331733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 36476356 - 36476475
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| || |||| ||| || ||||||||||||||||||||||| ||||| ||||||||| ||| | | |||| ||||||||||||||||| ||||     
T  36476356 ccgtgagcataactcaattggcacggacaatgcattattatatgcaggggccggagttcgaaccccgaacaccccacttattcactttaaaagtgaattc 36476455  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  36476456 ctagccactaggctacctga 36476475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 286
Target Start/End: Original strand, 52030118 - 52030217
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| || |||||||| ||||||||||| |||||||||||||| |||||  |||||||| ||||| | || | ||||||||||||||||| |||||    
T  52030118 ccgtgagcataactcagttggcagggacaatgtattattatatgcaggggccggggttcgaaccccggacaccctacttattcactttaaaagtgaattt 52030217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 3955303 - 3955396
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgca--gaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||  | |||||  |||||||| ||||| | |||| |||||||||||||||    
T  3955303 ccgtgagcatagctcaattgacagggacaatgcattattatatgcaggggggccggggttcgaaccccggacaccccacttattcactttaaaa 3955396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 47191370 - 47191454
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||| | ||||||||| ||| | | |||| ||||||||    
T  47191370 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggctggagttcgaaccccgaacaccccacttattcac 47191454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 3784063 - 3784186
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaa 282  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||| ||| || ||  |||||||| ||||| | ||||  | |||| ||||||||| |    
T  3784063 gtctctgtgagcatagctcagttggcagggacaatgcattattatatacaggggtcggggttcgaaccccggacaccccaccttttcattttaaaagtga 3784162  T
Q  283 atttctaatcactagaatacctga 306  Q
    |||||||  ||||| | |||||||    
T  3784163 atttctagccactaaactacctga 3784186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 362965 - 363050
Alignment:
Q  212 gacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcactag 297  Q
    |||||||||||||||||||||| || || ||||||||| ||||||| |||| |||||||||||| |||   | |||||||||||||    
T  362965 gacaatgcattattatatgcaggggtcggagttcgaaccccggataccccacttattcactttataaggtgaattctaatcactag 363050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 306
Target Start/End: Original strand, 44671480 - 44671585
Alignment:
Q  199 ctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcactaga 298  Q
    |||||||| |||| |||||| |||||||||||||| ||| || ||| |||| ||| | |||||| ||||||||||||||||| |||||||| ||| ||||    
T  44671480 ctcagttggcaggcacaatgtattattatatgcaggggcgga-gtttgaac-ccgaacatcccacttattcactttaaaagtgaatttctattcattaga 44671577  T
Q  299 atacctga 306  Q
     |||||||    
T  44671578 ctacctga 44671585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 307
Target Start/End: Original strand, 35140742 - 35140836
Alignment:
Q  213 acaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcactagaatacctgaa 307  Q
    ||||||||||||||||||||| |||||| || ||||  ||||| | ||||||||||||| ||| |||| || |||||  ||||||| ||||||||    
T  35140742 acaatgcattattatatgcagtggccgaggtgcgaatcccggacaccccaattattcaccttataagttaaattctagccactagactacctgaa 35140836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 44976571 - 44976668
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatt 285  Q
    |||||||| || |||||||||||||||||||||||||||||||| |   | || |||||||||  |||| | |||| ||||||||||||||||| ||||    
T  44976571 ccgtgagcataactcagttgacagggacaatgcattattatatgtaagagtcggagttcgaacctcggaca-cccacttattcactttaaaagtgaatt 44976668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 28226273 - 28226186
Alignment:
Q  199 ctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| |||| ||||||||||||||||||||| ||  |  |||||||  ||| | | |||| |||||||||||||||||||||||    
T  28226273 ctcagttggcaggaacaatgcattattatatgcaggggttggggttcgaatcccgaacaccccacttattcactttaaaagtaaattt 28226186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 12236597 - 12236642
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  12236597 ccgtgagcgtagctcagttggcagggac-atgcattattatatgcag 12236642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 16874287 - 16874226
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    |||||||| ||||||||||| ||||||| ||||||| |||||||||| |||||| ||||||||    
T  16874287 ccgtgagcatagctcagttggcagggac-atgcattgttatatgcaggggccgaggttcgaac 16874226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 278
Target Start/End: Original strand, 22854601 - 22854683
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||||||||||| ||| ||||||||||||||||| || || | ||| ||| ||  | |||||| |||||||||||||||    
T  22854601 tagctcagttgacaggaacagtgcattattatatgcaggggtcggacttcaaaccccaaacatcccatttattcactttaaaa 22854683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 289
Target Start/End: Original strand, 43598792 - 43598897
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaa 282  Q
    |||||||||| | ||| | ||||| ||| ||||||||||||||||||||||||| ||  ||||||||  || | | |||| ||||||||||||||| | |    
T  43598792 gtctccgtgatcatagtttagttggcagagacaatgcattattatatgcagaggtcggggttcgaac-tcgaacaccccacttattcactttaaaaatga 43598890  T
Q  283 atttcta 289  Q
    |||||||    
T  43598891 atttcta 43598897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 39298065 - 39298020
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgca 232  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||    
T  39298065 ccgtgagcatagctcagttggcggggacaatgcattattatatgca 39298020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 46879999 - 46880059
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    ||||||| |||||||||||| ||||| | |||||| ||||||||||||||||| ||||||||    
T  46879999 cgtgagcttagctcagttgatagggatattgcatt-ttatatgcagaggccgaggttcgaac 46880059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 14417889 - 14417949
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| ||| | ||||||||| ||||| | |||| ||||||||    
T  14417889 ggacaatgcattattatatgcaggggctggagttcgaaccccggacaccccacttattcac 14417949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 28550388 - 28550321
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| |||||||||||  ||||| | ||||| ||||||||||| ||||||||||||||| |||||    
T  28550388 ccgtgagcttagctcagttggtagggatattgcat-attatatgcaggggccgaagttcgaactccgga 28550321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 33206755 - 33206838
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| ||| |  |||||||| ||||| | |||| ||||||||    
T  33206755 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggctggggttcgaaccccggacaccccacttattcac 33206838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 43774182 - 43774266
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||| || ||  |||||||| || || | |||| ||||||||    
T  43774182 ccgtgagtatagctcagttggcagggacaatgcattgttatatgcaggggtcggggttcgaaccccagacaccccacttattcac 43774266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 45713501 - 45713561
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||||||||||||||| || ||||| ||||||||| ||||| | |||| ||||||||    
T  45713501 ggacaatgcattattatatgtaggggccggagttcgaactccggacaccccacttattcac 45713561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 49146105 - 49146169
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    ||||||||||||||||||||||| || ||  |||||||| ||||| | |||| ||||||||||||    
T  49146105 ggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcacttta 49146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 3993808 - 3993718
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttt 274  Q
    ||||| |||||| |||||||||||| |||||| ||||||| |||||||||| |||||  ||| |||| ||||| | |||| |||| ||||||    
T  3993808 gtctctgtgagcatagctcagttgagagggac-atgcattgttatatgcaggggccgcggtttgaaccccggacaccccatttatgcacttt 3993718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 15498227 - 15498286
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||||||||||||||||||| || ||||| ||||||||| ||||| || ||| |||||||    
T  15498227 ggacaatgcattattatatgtaggggccggagttcgaaccccggacattccacttattca 15498286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 23237369 - 23237443
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||| |||||||| |||||||||||||| || || || ||||||||| ||||| ||||||  |||||||    
T  23237369 tagctcagttggcagggaca-tgcattattatatgtaggggtcggagttcgaactccggacatcccacatattcac 23237443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 23820650 - 23820709
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    ||||||||||||||||||||||| ||||| ||||||||| || || | |||| |||||||    
T  23820650 ggacaatgcattattatatgcaggggccggagttcgaaccccagacaccccacttattca 23820709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 38555125 - 38555007
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||| ||||||| ||| |||||||||||||||||||||| || ||  ||||||||  |  | | | || ||||||||||||||||| |||||    
T  38555125 ccgtgagcatagttcagttggcagagacaatgcattattatatgcaggggtcg-ggttcgaacctcaaacacctcacttattcactttaaaagtgaattt 38555027  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||| ||| |||||||    
T  38555026 ctagccaccagactacctga 38555007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 6951887 - 6951842
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||    
T  6951887 ccgtgagcataactcagttgacagggac-atgcattattatatgcag 6951842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 19137617 - 19137678
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    |||||||| ||||||||||| |||| || ||||||| |||||||||| |||||| ||||||||    
T  19137617 ccgtgagcatagctcagttggcaggaac-atgcattgttatatgcaggggccgaggttcgaac 19137678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 20244155 - 20244201
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggata 257  Q
    ||||||||||||||||||||||| |||||  |||||||| |||||||    
T  20244155 ggacaatgcattattatatgcaggggccggggttcgaaccccggata 20244201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 45118644 - 45118729
Alignment:
Q  190 tgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaa 276  Q
    ||||| |||||||||||  ||||||| |||||||| |||||||| |||||  |||||||| | ||||  |||| |||||||||||||    
T  45118644 tgagcttagctcagttggtagggacattgcattat-atatgcaggggccggggttcgaacccgggattccccacttattcactttaa 45118729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 3973296 - 3973351
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccg 239  Q
    |||||||||||| |||||||||||  |||||| ||||||| |||||||||| |||||    
T  3973296 gtctccgtgagcatagctcagttggtagggac-atgcattgttatatgcaggggccg 3973351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 3996580 - 3996525
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccg 239  Q
    |||||||||||| |||||||||||  |||||| ||||||| |||||||||| |||||    
T  3996580 gtctccgtgagcatagctcagttggtagggac-atgcattgttatatgcaggggccg 3996525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 4010119 - 4010032
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||| |||||| |||||||||||  |||||| ||||||| |||||||||| ||||| |||| |||| ||| | | |||| ||||||||    
T  4010119 gtctctgtgagcatagctcagttggtagggac-atgcattgttatatgcaggggccgcagtttgaaccccgaacaccccatttattcac 4010032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 16278048 - 16277965
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| || |||||||||||||||||| || ||   ||||||| ||||| |||||| ||||||||    
T  16278048 ccgtgagcatagctcagttggtagg-accatgcattattatatgcaggggtcgggattcgaactccggacatcccacttattcac 16277965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 17440039 - 17439979
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| |||||  ||| ||||  |||||| |||| ||||||||    
T  17440039 ggacaatgcattattatatgcaggggccggtgtttgaacctcggataccccacttattcac 17439979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 24303391 - 24303458
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| ||||||||||| |||||||| ||||| ||| ||||||| |||||  |||||||| |||||    
T  24303391 ccgtgagcttagctcagttggcagggacattgcataatt-tatgcaggggccggggttcgaaccccgga 24303458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 24751334 - 24751290
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    ||||||||||||||||||||||| |||||  |||||||| |||||    
T  24751334 ggacaatgcattattatatgcaggggccggggttcgaaccccgga 24751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 32876190 - 32876130
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| || |||||||| |||  |||| |||| | ||||||||    
T  32876190 ggacaatgcattattatatgcaggggtcgaagttcaaacctcggacatcctatttattcac 32876130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 42271110 - 42271043
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| |||||||||||  ||| |||||||||| |||||||||| |||||  |||||||| |||||    
T  42271110 ccgtgagcatagctcagttggtagg-acaatgcattgttatatgcaggggccggggttcgaactccgga 42271043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 47427746 - 47427774
Alignment:
Q  211 ggacaatgcattattatatgcagaggccg 239  Q
    |||||||||||||||||||||||||||||    
T  47427746 ggacaatgcattattatatgcagaggccg 47427774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 49639026 - 49639109
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| |||||||||||||||||| || |||||  |||||||| ||| | | |||| ||||||||    
T  49639026 ccgtgagcatagctcagttggtagg-acaatgcattattatatgtaggggccggggttcgaaccccgaacaccccacttattcac 49639109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 47763483 - 47763364
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||  |||| |||||| ||||||||||||||||| |||||    
T  47763483 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggagttcgaacctcggacatcccacttattcactttaaaagtgaattt 47763384  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  47763383 ctagccactaggctacctga 47763364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 39238713 - 39238815
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  39238713 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccgaggttcgaaccccggacaccccacttattcactttaaaagtgaattt 39238812  T
Q  287 cta 289  Q
    |||    
T  39238813 cta 39238815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 289
Target Start/End: Complemental strand, 29107026 - 29106864
Alignment:
Q  128 taattttgccaaaatcatatttgaaggagagtgaagcaaaattattnnnnnnnnn-gtctccgtgagcgtagctcagttgacagggacaatgcattatta 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||          ||| |||| ||||||||||||||| ||| || ||||||||||||    
T  29107026 taattttgccaaaatcatatttgaaggagagtgaagcaaaattattaaaaaaaaaagtccccgt-agcgtagctcagttggcagagataatgcattatta 29106928  T
Q  227 tatgca-gaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttcta 289  Q
    |||||| | |||||| |||| ||||||||| | |||| |||||||||| |||||| ||||||||    
T  29106927 tatgcagggggccgatgttcaaacgccggacaccccatttattcacttgaaaagtgaatttcta 29106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 25819182 - 25819301
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||  ||||  |||||||| ||||||| |||| ||||||||||||||||| |||||    
T  25819182 ccgtgagcatagctcagttggcagggacaatgcattattatatgtaggagccggggttcgaaccccggataccccacttattcactttaaaagtgaattt 25819281  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||| |||||||    
T  25819282 ctagccactagactacctga 25819301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 52833204 - 52833085
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| || |||||||| |||||||||||||||||||||||||| |||||  |||||||| ||||| |||||| ||||||||||||||||| |||||    
T  52833204 ccgtgagcctaactcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacatcccatttattcactttaaaagtgaattt 52833105  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  52833104 ctagacactaggctacctga 52833085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 286
Target Start/End: Original strand, 38021249 - 38021348
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||| ||||| | |||| ||||||||||||||||| |||||    
T  38021249 ccgtgagcatagctcagttggcaaggacaatgcattattatatgcaggggccggagttcgaaccccggacaccccacttattcactttaaaagtgaattt 38021348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 40678820 - 40678939
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| |||||  |||||| | ||||| | |||| ||||||||||||||||| |||||    
T  40678820 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgatccccggacaccccacttattcactttaaaagtgaattt 40678919  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  40678920 ctagccactaggctacctga 40678939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 17350058 - 17350160
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  17350058 ccgtgagtatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 17350157  T
Q  287 cta 289  Q
    |||    
T  17350158 cta 17350160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 306
Target Start/End: Complemental strand, 13870177 - 13870060
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttct 288  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| |||||  ||| |||  ||||| | |||| ||||||||||||||||| |||||||    
T  13870177 gtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggtttgaatcccggacaccccacttattcactttaaaagtgaatttct 13870078  T
Q  289 aatcactagaatacctga 306  Q
    |  ||||||  |||||||    
T  13870077 agccactaggctacctga 13870060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 29491467 - 29491557
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaa 277  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| || ||  |||||||| ||||| | |||| ||||||||||||||    
T  29491467 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttaaa 29491557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 19976650 - 19976548
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| ||||||||||| ||  |||||||||| |||||  |||||||| ||||| | ||||  |||||||||||||||| |||||    
T  19976650 ccgtgagcatagctcagttggcagggacaatgtatggttatatgcaggggccggggttcgaaccccggacaccccacatattcactttaaaagtgaattt 19976551  T
Q  287 cta 289  Q
    |||    
T  19976550 cta 19976548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 35111647 - 35111748
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| |||||||||||| ||| ||||||||||||||||||||| || ||  |||||||| ||  | | |||| ||||||||||||||||| |||||    
T  35111647 ccgtgagcatagctcagttgataggaacaatgcattattatatgcag-gggcggggttcgaacccctaacaccccacttattcactttaaaagtgaattt 35111745  T
Q  287 cta 289  Q
    |||    
T  35111746 cta 35111748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 289
Target Start/End: Complemental strand, 17954952 - 17954855
Alignment:
Q  192 agcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttcta 289  Q
    |||| |||||||||| ||||||||||||||| |||||||||| |  ||  |||||||  ||||| | |||| ||||||||||||||||| ||||||||    
T  17954952 agcgcagctcagttggcagggacaatgcattgttatatgcagggatcgtggttcgaataccggacaccccacttattcactttaaaagtgaatttcta 17954855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 2052780 - 2052712
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||| |||||  |||||||| |||||    
T  2052780 ccgtgagcatagctcagttggcagggacaatgcattatcatatgcaggggccggggttcgaaccccgga 2052712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 25162759 - 25162709
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggc 237  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  25162759 ccgtgagcatagctcagttagcagggacaatgcattattatatgcagaggc 25162709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 30632482 - 30632424
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttc 245  Q
    |||||| | ||||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  30632482 ccgtgatcatagctcagttgacagggacaatgcattgttatatgcaggggccgaggttc 30632424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 9527423 - 9527469
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  9527423 ccgtgagcatagctcagttggcagggacaatgcattgttatatgcag 9527469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 24014681 - 24014623
Alignment:
Q  212 gacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||||||||||||||||||||| ||||| ||||||||| | ||| | ||||||||||||    
T  24014681 gacaatgcattattatatgcaggggccggagttcgaactctggacaccccaattattca 24014623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 42908769 - 42908850
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattc 269  Q
    |||||||| ||||||||||| ||||||| ||||||| |||||||||| || ||  |||||||| ||||||| |||| ||||||    
T  42908769 ccgtgagcttagctcagttggcagggac-atgcattgttatatgcaggggtcggggttcgaactccggataccccacttattc 42908850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 38020045 - 38019985
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaa 248  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| ||||| ||||||||    
T  38020045 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggagttcgaa 38019985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 9768906 - 9768823
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| ||||||||||| ||||||| ||||||| |||||||||| || ||  |||||||| ||||| | |||| ||||||||    
T  9768906 ccgtgagcatagctcagttggcagggac-atgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcac 9768823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 15368826 - 15368890
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    ||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||| ||||    
T  15368826 ggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcatttta 15368890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 16997332 - 16997261
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||||||| |||||||||||  || ||||||||| |||| ||||||| |||||| |||||||| |||||    
T  16997332 gtctccgtgagcttagctcagttggtagagacaatgca-tattttatgcaggggccgaggttcgaaccccgga 16997261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 19793547 - 19793607
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| ||||| | ||||||| ||||| | |||| ||||||||    
T  19793547 ggacaatgcattattatatgcaggggccggaattcgaaccccggacaccccacttattcac 19793607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 21884596 - 21884656
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| |||||| |||||||| || || | |||| ||||||||    
T  21884596 ggacaatgcattattatatgcaggggccgaggttcgaaccccagacaccccacttattcac 21884656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 23464060 - 23463996
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    ||||||||||||||||||||||| |||||  |||||||| ||||| | |||| || |||||||||    
T  23464060 ggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttgttcacttta 23463996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 2208712 - 2208649
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttt 274  Q
    ||||||||||||||||||||||| || ||| |||| ||| || || |||||| |||||||||||    
T  2208712 ggacaatgcattattatatgcaggggacgaggttcaaaccccagacatcccacttattcacttt 2208649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 3341824 - 3341750
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||  | |||||| ||||| | |||| ||||||||    
T  3341824 tagctcagttggcagggaca-tgcattattatatgcaggggccggggatcgaaccccggacaccccacttattcac 3341750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 195044 - 195125
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||| ||| || ||||| || || || | |||| ||||||||    
T  195044 gtgagcgtagctcagttggcagggac-atgcataattatatgcaggggctgaggttcgtaccccagacaccccacttattcac 195125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 538401 - 538343
Alignment:
Q  213 acaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||| ||||| ||||||||| ||| | | |||| ||||||||    
T  538401 acaatgcattattatatgcaggggccggagttcgaaccccgaacaccccacttattcac 538343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 4354200 - 4354119
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||| |||||||||||  ||| ||||||||||||||||||||| |||||  ||||||||  |||| | |||| ||||||||    
T  4354200 gtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggggttcgaacttcggacaccccacttattcac 4354119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 5172699 - 5172654
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| |||||||||||| ||| |||||||||||||||||||||    
T  5172699 ccgtgagcatagctcagttgatagg-acaatgcattattatatgcag 5172654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 11907376 - 11907338
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  11907376 ggacaatgcattattatatgcagaggccggggttcgaac 11907338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 47141891 - 47141834
Alignment:
Q  199 ctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggata 257  Q
    |||||||||||||||| ||||||| |||||||||| || || ||||||||| |||||||    
T  47141891 ctcagttgacagggac-atgcattgttatatgcaggggtcggagttcgaaccccggata 47141834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 47939292 - 47939250
Alignment:
Q  191 gagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||    
T  47939292 gagcatagctcagttggcagggacaatgcattgttatatgcag 47939250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 52426985 - 52426921
Alignment:
Q  184 tctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    ||||||||||| |||||||||||| ||||| | |||| |||||||||||| |||||  ||||||||    
T  52426985 tctccgtgagcttagctcagttgatagggatattgca-tattatatgcaggggccgtggttcgaac 52426921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 6893306 - 6893239
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| |||||||||||  ||||| | |||||| |||||||||| |||||| |||||||| |||||    
T  6893306 ccgtgagcttagctcagttggtagggatattgcatt-ttatatgcaggggccgaggttcgaaccccgga 6893239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 11333661 - 11333732
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||||| | |||||||||||  ||||||| ||||| ||| ||||||| ||||| ||||||||| |||||    
T  11333661 gtctccgtgaacttagctcagttggtagggacattgcataatt-tatgcaggggccggagttcgaaccccgga 11333732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 11491682 - 11491753
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||||| | |||||||||||  ||||||| ||||| ||| ||||||| ||||| ||||||||| |||||    
T  11491682 gtctccgtgaacttagctcagttggtagggacattgcataatt-tatgcaggggccggagttcgaaccccgga 11491753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 18003814 - 18003865
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccg 239  Q
    |||||||| ||||||||||| ||||||| ||||||| |||||||||| |||||    
T  18003814 ccgtgagcatagctcagttggcagggac-atgcattgttatatgcaggggccg 18003865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 37733776 - 37733836
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| || ||  |||||||| ||||| | |||| ||||||||    
T  37733776 ggacaatgcattattatatgcagtggacggggttcgaaccccggacaccccacttattcac 37733836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 39433383 - 39433439
Alignment:
Q  215 aatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||| |||||| ||||||||  |||| | |||| ||||||||    
T  39433383 aatgcattattatatgcaggggccgatgttcgaacctcggacaccccacttattcac 39433439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 41677058 - 41677141
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||||||||||||||| ||| ||| || ||||||||||||| | || ||  |||||||| ||||| | |||| ||||||||    
T  41677058 ccgtgagcgtagctcagttggcagagac-attcattattatatgcgggggtcggggttcgaactccggacaccccacttattcac 41677141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 46116248 - 46116188
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||||||||| |||||||| ||| |  |||||||| ||||| | |||||||||||||    
T  46116248 ggacaatgcattatcatatgcaggggctggggttcgaaccccggacaccccaattattcac 46116188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 47469142 - 47469075
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| ||||||||||| |||||||| ||||| ||| ||||||| ||| || |||||||| |||||    
T  47469142 ccgtgagcttagctcagttggcagggacattgcataatt-tatgcaggggctgaggttcgaaccccgga 47469075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 52961179 - 52961112
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| ||||||||||| || |||| ||||||| |||||||||| |||||  |||||||| |||||    
T  52961179 ccgtgagcatagctcagttggcaaggac-atgcattgttatatgcaggggccggggttcgaaccccgga 52961112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 188 - 306
Target Start/End: Complemental strand, 4674912 - 4674794
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttc 287  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| || ||  |||||||| ||||| | |||| ||||||||||||||||| ||||||    
T  4674912 cgtgagcatagctcagttgacagggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttaaaagtgaatttc 4674813  T
Q  288 taatcactagaatacctga 306  Q
    ||| ||||| | |||||||    
T  4674812 taaccactaaactacctga 4674794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 1463870 - 1463970
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttct 288  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||||    
T  1463870 gtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaatttct 1463969  T
Q  289 a 289  Q
    |    
T  1463970 a 1463970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 6447578 - 6447459
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| || |||||||| |||||||||||||||||||||||||| |||||  ||||||||  |||| | |||| ||||||||||||||| | |||||    
T  6447578 ccgtgagcataactcagttggcagggacaatgcattattatatgcaggggccggggttcgaacctcggacaccccacttattcactttaaaaatgaattt 6447479  T
Q  287 ctaatcactagaatacctga 306  Q
    |||| ||||| | |||||||    
T  6447478 ctaaccactacactacctga 6447459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 290
Target Start/End: Complemental strand, 36045232 - 36045129
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| |||||||||||||| | ||||||||||||||||||||| || ||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  36045232 ccgtgagcatagctcagttgacaagaacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 36045133  T
Q  287 ctaa 290  Q
    ||||    
T  36045132 ctaa 36045129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 20735273 - 20735154
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||| | ||||||||||| ||||||||||||||||||||||| || |||||  |||||||  ||||| | |||| ||||||||||||||||| |||||    
T  20735273 ccgtgaacatagctcagttggcagggacaatgcattattatatgtaggggccggggttcgaatcccggacaccccacttattcactttaaaagtgaattt 20735174  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  20735173 ctagccactaggctacctga 20735154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 37303931 - 37304022
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||| || ||  |||||||| | ||| | |||| |||||||||||||||    
T  37303931 ccgtgagcatagctcagttggcagggacaatgtattattatatgcaggggtcggggttcgaaccctggacaccccacttattcactttaaaa 37304022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 30733126 - 30733236
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcact 295  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |   |||||||| ||||| |  ||| |||||||||| |||| ||||||||||  ||||    
T  30733126 tagctcagttggcagggacaatgtattattatatgcagaggtcagggttcgaactccggacactccacttattcacttgaaaaataaatttctagccact 30733225  T
Q  296 agaatacctga 306  Q
    ||  |||||||    
T  30733226 aggctacctga 30733236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 37417227 - 37417126
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||||| ||||   |||||||| || || | |||| ||| ||||||||||||| |||||    
T  37417227 ccgtgagcttagctcagttggcagggacaatacattattatatgcaggggccagggttcgaac-cctgacaccccacttactcactttaaaagtgaattt 37417129  T
Q  287 cta 289  Q
    |||    
T  37417128 cta 37417126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 42618511 - 42618423
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    |||||||| || |||||||| |||||||||||||||||||||| ||| || ||  |||||||  ||||||| |||| ||||||||||||    
T  42618511 ccgtgagcatacctcagttggcagggacaatgcattattatatacaggggtcggggttcgaatcccggataccccacttattcacttta 42618423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 10943740 - 10943804
Alignment:
Q  214 caatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||||||||||||||| |||||  |||||||| ||||| | |||| |||||||||||||||    
T  10943740 caatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaa 10943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 29096403 - 29096322
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||| |||||||||||  ||| ||||||||||||||||||||  ||||| ||||||||| ||||| | |||| ||||||||    
T  29096403 gtgagcatagctcagttggtagg-acaatgcattattatatgcaagggccggagttcgaaccccggacaccccacttattcac 29096322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 29106112 - 29106074
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  29106112 ggacaatgcattattatatgcaggggccgaagttcgaac 29106074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 9409036 - 9408980
Alignment:
Q  199 ctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| ||||||||||||||| |||||||||| || || ||||||||| |||||    
T  9409036 ctcagttggcagggacaatgcattgttatatgcaggggtcggagttcgaaccccgga 9408980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 42455468 - 42455424
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||    
T  42455468 ggacaatgcattattatatgcaggggccggagttcgaaccccgga 42455424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 10106632 - 10106710
Alignment:
Q  191 gagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||| ||||||||||| |||||||| | |||||||||||| || |||| |||||||||| ||||| | |||| |||||||    
T  10106632 gagcatagctcagttggcagggaca-tccattattatatgtaggggccaaagttcgaaccccggacaccccacttattca 10106710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 18102046 - 18101956
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||| |||||| ||||| || |||| || |||||||||||||| ||||| ||||||||| || || | |||| |||||||| ||||||    
T  18102046 ccgtgagcatagctcggttgatagagaca-tgtattattatatgcaggggccggagttcgaaccccagacaccccacttattcaccttaaaa 18101956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 37986936 - 37986881
Alignment:
Q  216 atgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||| || |||| |||| ||||| |||||| ||||||||    
T  37986936 atgcattattatatgcagaggtcggagtttgaaccccggacatcccacttattcac 37986881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 6806738 - 6806692
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| ||||||||||| ||| ||||||||||| ||||||||||    
T  6806738 ccgtgagcatagctcagttggcagagacaatgcattgttatatgcag 6806692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 9963413 - 9963459
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||  ||||||||||| ||||||||||||||| ||||||||||    
T  9963413 ccgtgagtatagctcagttggcagggacaatgcattgttatatgcag 9963459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 35813339 - 35813294
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  35813339 ccgtgagcatagctcagttgacagggac-atgcattgttatatgcag 35813294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 5156894 - 5156939
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgca 232  Q
    |||||||| |||||||||||||| | |||||||||| |||||||||    
T  5156894 ccgtgagcatagctcagttgacatgaacaatgcattgttatatgca 5156939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 18872519 - 18872607
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaa 276  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| || ||  |||||||| ||| | | |||| |||||||| ||||    
T  18872519 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggtcggggttcgaaccccgaacaccccacttattcaccttaa 18872607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 23155895 - 23155955
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    ||||||| ||||||| ||| |||||||| ||||| ||| |||||||||||||| ||||||||    
T  23155895 cgtgagcttagctcaattggcagggacattgcataatt-tatgcagaggccgaggttcgaac 23155955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 29841347 - 29841427
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattc 269  Q
    ||||||| |||||||||||  ||| ||||||||||||||||||||  ||||||  ||||||| ||||| | |||| ||||||    
T  29841347 cgtgagcatagctcagttggtagg-acaatgcattattatatgcaagggccgagattcgaaccccggacaccccacttattc 29841427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 32200509 - 32200476
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcat 221  Q
    ||||||| ||||||||||||||||||||||||||    
T  32200509 cgtgagcttagctcagttgacagggacaatgcat 32200476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 2867685 - 2867630
Alignment:
Q  215 aatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||| ||||| |||||||||  |||| |||||| ||||||||    
T  2867685 aatgcattattatatgcag-ggccggagttcgaacttcggacatcccacttattcac 2867630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 4067983 - 4068050
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| |||||||||||  |||||||||||| |||| ||||||| || ||| |||||||| |||||    
T  4067983 ccgtgagcttagctcagttggtagggacaatgca-tattttatgcagggggcgaggttcgaaccccgga 4068050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 7234946 - 7234886
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||||||||||||||| ||||| ||  |||||||| || |||| |||| ||||||||    
T  7234946 ggacaatgcattattatatgtagaggtcggggttcgaaccccagataccccatttattcac 7234886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 18303121 - 18303057
Alignment:
Q  242 gttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcactagaatacctga 306  Q
    |||||||| ||| | | |||| ||||||||||||||||| ||||||||  ||||||| |||||||    
T  18303121 gttcgaaccccgaacaccccacttattcactttaaaagtgaatttctagccactagactacctga 18303057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 19059101 - 19059018
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| |||||||||||| |||||||| |||||  |||||||| | ||| | |||| ||||||||    
T  19059101 ccgtgagcatagctcagttggtagg-acaatgcattatcatatgcaggggccggggttcgaaccctggacaccccacttattcac 19059018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 20945965 - 20945905
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| |||||  |||||||  ||||| | |||| ||||||||    
T  20945965 ggacaatgcattattatatgcaggggccggggttcgaaatccggacaccccacttattcac 20945905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 32158488 - 32158428
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| |||||  |||||||| ||| | | |||| ||||||||    
T  32158488 ggacaatgcattattatatgcaggggccggggttcgaaccccgaacaccccacttattcac 32158428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 33141863 - 33141803
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||||||||||||||||||  | ||| |||||||| |  ||||||||| ||||||||    
T  33141863 ggacaatgcattattatatgcaggagtcgaggttcgaaccctagatatcccatttattcac 33141803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 33800914 - 33800974
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| |||||  |||||||| || || | |||| ||||||||    
T  33800914 ggacaatgcattattatatgcaggggccggggttcgaaccccagacaccccacttattcac 33800974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 38040267 - 38040345
Alignment:
Q  190 tgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    ||||| ||||||||||| ||||||| ||||||| |||||||||| || ||| ||||||||  |||| |||||| |||||||    
T  38040267 tgagcatagctcagttggcagggac-atgcattgttatatgcaggggtcgaggttcgaac-tcggacatcccacttattca 38040345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 2800016 - 2800135
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  2800016 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 2800115  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  2800116 ctagccactaggctacctga 2800135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 2696530 - 2696649
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| || |||||||| |||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  2696530 ccgtgagcataactcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 2696629  T
Q  287 ctaatcactagaatacctga 306  Q
    || | ||||||  |||||||    
T  2696630 ctgaccactaggctacctga 2696649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 10292349 - 10292468
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||  |||||||  |||| | |||| ||||||||||||||||| |||||    
T  10292349 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggctgagattcgaacctcggacaccccacttattcactttaaaagtgaattt 10292448  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||| |||||||    
T  10292449 ctagccactagactacctga 10292468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 297
Target Start/End: Original strand, 7314726 - 7314840
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaa 282  Q
    |||||||||||| || |||| ||| |||||||||| ||||||||||||||| |||||| |||||||| ||||| | |||| ||||||||||||||||| |    
T  7314726 gtctccgtgagcataactcaattggcagggacaatacattattatatgcaggggccgaggttcgaaccccggacaccccacttattcactttaaaagtga 7314825  T
Q  283 atttctaatcactag 297  Q
    ||| ||| |||||||    
T  7314826 attcctagtcactag 7314840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 35301252 - 35301142
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcact 295  Q
    ||||||||||| |||||||||||||||||||||||||| || ||  |||||||| ||||| | || | ||||||||||||||||| ||||||||  ||||    
T  35301252 tagctcagttggcagggacaatgcattattatatgcaggggtcggggttcgaactccggacaccctacttattcactttaaaagtgaatttctagccact 35301153  T
Q  296 agaatacctga 306  Q
    ||| |||||||    
T  35301152 agactacctga 35301142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 1588766 - 1588866
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttct 288  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||| |||||  ||||||||  |||| | |||| ||||||||||||||||| |||||||    
T  1588766 gtgagcatagcttagttggcagggacaatgcattattatatgcaggggccggggttcgaacctcggacaccccacttattcactttaaaagtgaatttct 1588865  T
Q  289 a 289  Q
    |    
T  1588866 a 1588866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 38790671 - 38790551
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggcc-gaagttcgaacgccggatatcccaattattcactttaaaagtaaatt 285  Q
    |||||||| || |||||||| |||||||||||||||||||||||||| |||| |  |||||||| || || | |||| ||||||||||||||||| ||||    
T  38790671 ccgtgagcataactcagttggcagggacaatgcattattatatgcaggggccgggggttcgaaccccagacaccccacttattcactttaaaagtgaatt 38790572  T
Q  286 tctaatcactagaatacctga 306  Q
    ||||  ||||||  |||||||    
T  38790571 tctaggcactaggctacctga 38790551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 22426397 - 22426517
Alignment:
Q  186 tccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatt 285  Q
    ||||||||| || |||| ||||||||||||||||||||||||||| || ||  || |||||||| || || | |||| ||||||||||||||||| ||||    
T  22426397 tccgtgagcataactcaattgacagggacaatgcattattatatgtaggggttgaggttcgaacccctgacaccccatttattcactttaaaagtgaatt 22426496  T
Q  286 tctaatcactagaatacctga 306  Q
      ||| ||||||  |||||||    
T  22426497 cttaaccactaggctacctga 22426517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 290
Target Start/End: Complemental strand, 36815561 - 36815459
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||| | |||   ||||||| ||||| | |||| |||||||||| |||||| |||||    
T  36815561 ccgtgagcatagctcagttgacagagacaatgcattattatatacagcgaccgggattcgaactccgga-accccacttattcacttcaaaagtgaattt 36815463  T
Q  287 ctaa 290  Q
    ||||    
T  36815462 ctaa 36815459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 10310291 - 10310381
Alignment:
Q  199 ctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttcta 289  Q
    |||||||| ||| |||||||||||||||||| |||||| || |||| |||  ||||| | |||| ||||||||||||||||| ||||||||    
T  10310291 ctcagttggcagagacaatgcattattatatacagaggtcggagtttgaatcccggacaccccacttattcactttaaaagtgaatttcta 10310381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 5323931 - 5324028
Alignment:
Q  199 ctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcacta 296  Q
    |||||||| ||| |||||||||||||||||||||| || ||  |||||||| |||||   | || ||||||||||||||||| ||||||||| |||||    
T  5323931 ctcagttggcagtgacaatgcattattatatgcaggggtcggggttcgaaccccggactcctcagttattcactttaaaagtgaatttctaaccacta 5324028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 286
Target Start/End: Original strand, 31129302 - 31129398
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||| | ||||||||||| ||||||||||||||||||||||   | || ||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  31129302 ccgtgatcatagctcagttggcagggacaatgcattattatat---ggggtcggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 31129398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 14012609 - 14012693
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| ||| ||||||| ||||||||||||||| |||||||||| |||||  |||||||  ||||| | |||| ||||||||    
T  14012609 ccgtgagcatagttcagttggcagggacaatgcattgttatatgcaggggccggggttcgaagtccggacaccccacttattcac 14012693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 15042462 - 15042379
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||    
T  15042462 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcac 15042379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 17987519 - 17987463
Alignment:
Q  215 aatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||| ||||| ||||||||| ||||| | |||||||||||||    
T  17987519 aatgcattattatatgcaggggccggagttcgaaccccggacaccccaattattcac 17987463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 39484467 - 39484385
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| |||||  ||||||| |||||| | |||| |||||||    
T  39484467 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggggttcgaatgccggacaccccacttattca 39484385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 278
Target Start/End: Original strand, 17110313 - 17110391
Alignment:
Q  199 ctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    ||||||||  ||||||||||||||||||||||||| || ||  |||| ||| ||||| |||||| |||||| ||||||||    
T  17110313 ctcagttggtagggacaatgcattattatatgcaggggtcggggttcaaac-ccggacatcccacttattcgctttaaaa 17110391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 9524955 - 9525016
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| |||||  ||||||||    
T  9524955 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggggttcgaac 9525016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 18009789 - 18009711
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttcta 289  Q
    ||||||||||||||||||||||| | |||  |||||||  ||| |||   || ||||||||||||||||| ||||||||    
T  18009789 ggacaatgcattattatatgcagggtccggggttcgaatcccgaatacttcacttattcactttaaaagtgaatttcta 18009711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 21133617 - 21133571
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| || |||||||| |||| |||||||||||||||||||||    
T  21133617 ccgtgagcataactcagttggcaggaacaatgcattattatatgcag 21133571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 24608580 - 24608519
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| |||||  ||||||||    
T  24608580 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggggttcgaac 24608519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 14683900 - 14683992
Alignment:
Q  213 acaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcactagaatacctga 306  Q
    ||||||||||||||||||||| || ||  |||||||| ||||| |||||| |||||||| ||| |||   | ||||| |||||||| |||||||    
T  14683900 acaatgcattattatatgcag-ggtcggggttcgaaccccggacatcccacttattcaccttataaggtgaattctagtcactagactacctga 14683992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 23858195 - 23858259
Alignment:
Q  184 tctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    ||||||||||| |||||||||||  ||||| | ||||| ||||||||||| ||||| |||||||||    
T  23858195 tctccgtgagcttagctcagttggtagggatattgcat-attatatgcaggggccggagttcgaac 23858259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 35253907 - 35253803
Alignment:
Q  201 cagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcactagaat 300  Q
    |||||| |||||||||| ||||| ||||||||| ||  |  |||||||  ||||| | |||| ||||||||||||||||| ||||||||  ||||||  |    
T  35253907 cagttggcagggacaatacattaatatatgcaggggttggggttcgaat-ccggacaccccacttattcactttaaaagtgaatttctagccactaggct 35253809  T
Q  301 acctga 306  Q
    ||||||    
T  35253808 acctga 35253803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 43847701 - 43847761
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    ||||||| |||||||||||  ||| ||||||||||||||||||||| |||||  ||||||||    
T  43847701 cgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggggttcgaac 43847761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 171234 - 171274
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcatta 223  Q
    |||||||||||| |||||||||||  |||||||||||||||    
T  171234 gtctccgtgagcatagctcagttggtagggacaatgcatta 171274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 2792780 - 2792847
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| |||||||||||| ||||| | |||| |||||||||||| |||||  |||||||| |||||    
T  2792780 ccgtgagcttagctcagttgatagggatattgca-tattatatgcaggggccggggttcgaaccccgga 2792847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 4798611 - 4798555
Alignment:
Q  215 aatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||    
T  4798611 aatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcac 4798555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 9737457 - 9737370
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    |||||||| |||||||||||  ||| ||||| |||||||||||  || |||||| |||||||| ||||| | |||| ||||| ||||||    
T  9737457 ccgtgagcatagctcagttggtagg-acaatacattattatatataggggccgaggttcgaactccggacaccccacttatttacttta 9737370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 10328477 - 10328517
Alignment:
Q  264 ttattcactttaaaagtaaatttctaatcactagaatacct 304  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  10328477 ttattcactttaaaagtaaatttttaaccactagactacct 10328517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 17980280 - 17980347
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| |||||||||||  ||| |||| |||||||||||||||| |||||  |||||||| |||||    
T  17980280 ccgtgagcatagctcagttggtagg-acaaagcattattatatgcaggggccggggttcgaaccccgga 17980347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 61)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 28520829 - 28520710
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  28520829 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 28520730  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  28520729 ctagccactaggctacctga 28520710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 9692959 - 9693078
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  9692959 ccgtgagcatagctcagttggcagggataatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 9693058  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  9693059 ctagccactaggctacctga 9693078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 14149790 - 14149909
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||| | ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  14149790 ccgtgaccatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 14149889  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  14149890 ctagccactaggctacctga 14149909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 48968308 - 48968189
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  48968308 ccgtgagcatagttcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 48968209  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  48968208 ctagccactaggctacctga 48968189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 53815693 - 53815812
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||| |  |||||||| ||||| | |||| ||||||||| ||||||| |||||    
T  53815693 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggctggggttcgaaccccggacaccccacttattcactataaaagtgaattt 53815792  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  53815793 ctagccactaggctacctga 53815812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 306
Target Start/End: Original strand, 8690212 - 8690330
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttc 287  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||| || ||  |||||||| ||||| | |||| ||||||||||||||||| ||||||    
T  8690212 cgtgagcatagctcagttggcaaggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttaaaagtgaatttc 8690311  T
Q  288 taatcactagaatacctga 306  Q
    ||  ||||||  |||||||    
T  8690312 tagccactaggctacctga 8690330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 303
Target Start/End: Original strand, 46799405 - 46799520
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||| | ||||| |||| ||||||||||||||||||||||| |||| |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  46799405 ccgtgagcatagtttagttggcaggcacaatgcattattatatgcagag-ccgaggttcgaaccccggacaccccatttattcactttaaaagtgaattt 46799503  T
Q  287 ctaatcactagaatacc 303  Q
    |||  ||||||| ||||    
T  46799504 ctagccactagactacc 46799520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 36954133 - 36954236
Alignment:
Q  187 ccgtgagcgtagctca-gttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatt 285  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||||| || ||  |||||||| ||||| | |||| ||||||||||||||||| ||||    
T  36954133 ccgtgagcatagctcaagttggcagggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccatttattcactttaaaagtgaatt 36954232  T
Q  286 tcta 289  Q
    ||||    
T  36954233 tcta 36954236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 52031204 - 52031306
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||| ||||||||||| ||||||||| || ||  |||||||| || || | |||| ||||||||||||||||| |||||    
T  52031204 ccgtgagcttagctcagttggcaggaacaatgcattagtatatgcaggggtcggggttcgaaccccagacaccccacttattcactttaaaagtgaattt 52031303  T
Q  287 cta 289  Q
    |||    
T  52031304 cta 52031306  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 15640541 - 15640422
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| || |||||||| ||| |||||||||||||||||||||| |  ||  ||||||||  | || | |||| ||||||||||||||||| |||||    
T  15640541 ccgtgagcatatctcagttggcagagacaatgcattattatatgcagtgttcggggttcgaacctcagacaccccacttattcactttaaaagtgaattt 15640442  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||| |||||||    
T  15640441 ctagccactagactacctga 15640422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 20610733 - 20610827
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    ||||| |||||| ||||||||||| ||||||| ||||||| |||||||||| |||||  |||||||| ||||| |||||| |||||||| ||||||    
T  20610733 gtctctgtgagcatagctcagttggcagggac-atgcattgttatatgcaggggccggggttcgaactccggacatcccacttattcaccttaaaa 20610827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 40150470 - 40150589
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||| ||||||| |||| ||||||||||||||||| ||| || ||  |||||||| ||||| | | || ||||||||||||||||| |||||    
T  40150470 ccgtgagcatagttcagttggcaggaacaatgcattattatatacaggggtcggggttcgaaccccggacacctcacttattcactttaaaagtgaattt 40150569  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  || |||| |||||||    
T  40150570 ctatccattagactacctga 40150589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 42411552 - 42411461
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||||| || ||  |||||||| ||||| | |||| ||||| |||||||||    
T  42411552 ccgtgagcatagctcagttggcagggacaatgcataattatatgcaggggtcggggttcgaaccccggacaccccacttatttactttaaaa 42411461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 20166314 - 20166395
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattc 269  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||| |||||| |||||||| || |||| |||| ||||||    
T  20166314 ccgtgagcgtagctcagttggcagggac-atgcattgttatatgcaggggccgaggttcgaaccccagataccccacttattc 20166395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 27296828 - 27296938
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcact 295  Q
    ||||||||||| |||| |||||||||||||||||  || ||  |  |||||||| ||| | ||| || ||||||||||||||||||||||||||  ||||    
T  27296828 tagctcagttggcaggaacaatgcattattatatataggggttggggttcgaaccccgaacatctcatttattcactttaaaagtaaatttctagccact 27296927  T
Q  296 agaatacctga 306  Q
    ||| |||||||    
T  27296928 agactacctga 27296938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 2565258 - 2565319
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaa 248  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||| || || ||||||||    
T  2565258 ccgtgagcatagctcagttgacagggacaatgcattgttatatgcaggggtcggagttcgaa 2565319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 36008272 - 36008356
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||| |||||  |||||||| ||| | | |||| ||||||||    
T  36008272 ccgtgagcatagctcagttggcagggacaatgcattgttatatgcaggggccggggttcgaaccccgaacaccccacttattcac 36008356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 34773779 - 34773693
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    ||||||| ||| |||||||| ||| ||||||||||||||||||||| ||| || |||||||| ||||| | |||| ||||||||||||    
T  34773779 cgtgagcatagttcagttgatagg-acaatgcattattatatgcaggggctgaggttcgaaccccggacaccccacttattcacttta 34773693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 35031382 - 35031468
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    ||||||| |||||||||||  ||| |||||||||||||||||||||  ||||| |||||||| || ||||||||| ||||| ||||||    
T  35031382 cgtgagcatagctcagttggtagg-acaatgcattattatatgcaggagccgaggttcgaaccccagatatcccatttatttacttta 35031468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 36257692 - 36257782
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||| ||||||||||| ||||||||| ||| |||| ||||||| |||||  |||||||| ||||| | |||| |||||||||||||||    
T  36257692 ccgtgagcatagctcagttggcagggacaa-gcagtattgtatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaa 36257782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 11872892 - 11872970
Alignment:
Q  209 agggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttt-aaaagtaaattt 286  Q
    |||||||||||||||||||||| || || || ||||||||| ||||| |||| | ||||||||||| ||||||||||||    
T  11872892 agggacaatgcattattatatgtaggggtcggagttcgaaccccggacatcctacttattcactttaaaaagtaaattt 11872970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 278
Target Start/End: Original strand, 31480277 - 31480359
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    ||||||||||| ||||||||||||||| |||||||||| ||| ||| ||||||| ||| | | |||| |||||||| ||||||    
T  31480277 tagctcagttggcagggacaatgcattgttatatgcaggggctgaaattcgaaccccgaacaccccacttattcaccttaaaa 31480359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 34106599 - 34106696
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatt 285  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||| ||  |||||||| || || | |||| |||| |||| ||||||| ||||    
T  34106599 ccgtgagcatagctcagttggcaggaacaatgcattattatatgcagaggtcg-ggttcgaaccccagacaccccacttatccactctaaaagtgaatt 34106696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 3465604 - 3465664
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||| | |||| ||||||||    
T  3465604 ggacaatgcattattatatgcaggggccggagttcgaaccccggacaccccacttattcac 3465664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 47018043 - 47017960
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||    
T  47018043 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcac 47017960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 5909873 - 5909772
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttct 288  Q
    |||||| |||||||||||  |||||||||| ||||||||||     ||||| ||||||||| || || |||||| ||||||||||||||| | |||||||    
T  5909873 gtgagcatagctcagttggaagggacaatgtattattatat-----ggccggagttcgaactcc-gacatcccacttattcactttaaaaatgaatttct 5909780  T
Q  289 aatcacta 296  Q
    || |||||    
T  5909779 aaccacta 5909772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 7768854 - 7768795
Alignment:
Q  219 cattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||||||||||||||||  |||||||| ||||| | |||| |||||||||||||||    
T  7768854 cattattatatgcagaggccggggttcgaaccccggacaccccacttattcactttaaaa 7768795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 21476178 - 21476096
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||||||| |||||||||||| ||| | | ||||||||||||||||| || ||| |||||||| ||||| |||||| |||||||    
T  21476178 ccgtgagcatagctcagttgatagg-atattgcattattatatgcaggggtcgatgttcgaactccggacatcccacttattca 21476096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 9084752 - 9084802
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||| ||||| ||||||||||| ||||||||||||||| ||||||||||    
T  9084752 gtctccatgagcatagctcagttggcagggacaatgcattgttatatgcag 9084802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 41492595 - 41492534
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||  ||||||||    
T  41492595 ccgtgagcatagctcagttggcagggaca-tgcattattatatgcaggggccggggttcgaac 41492534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 48512196 - 48512242
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  48512196 ccgtgagcatagctcagttggcagggacaatgcattgttatatgcag 48512242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 56531332 - 56531266
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||| ||||||||||| || |||||||||||| |||||||||| |||||  |||||||| |||||    
T  56531332 gtgagcatagctcagttggcaaggacaatgcattgttatatgcaggggccggggttcgaactccgga 56531266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 32885685 - 32885769
Alignment:
Q  186 tccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||| |||||||||||  ||| ||||||||||||||||||||| || || |||||||||  |||| | |||| ||||||||    
T  32885685 tccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggtcggagttcgaacctcggacaccccacttattcac 32885769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 306
Target Start/End: Complemental strand, 48501754 - 48501637
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttct 288  Q
    |||||| || |||| ||| | ||||||||| |||||||||||||| ||| |  ||||||||  || | | |||| ||||||||||||||||| |||| ||    
T  48501754 gtgagcataactcaattggcggggacaatgtattattatatgcaggggctggggttcgaacatcgaacaccccacttattcactttaaaagtgaattcct 48501655  T
Q  289 aatcactagaatacctga 306  Q
    || || |||| |||||||    
T  48501654 aaccagtagactacctga 48501637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 35333062 - 35333002
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||| | | |||| ||||||||    
T  35333062 ggacaatgcattattatatgcagtggccggagttcgaactccgaacaccccatttattcac 35333002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 45350297 - 45350357
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||| |||||||||||||||||||| || ||||||||| ||||| | |||| ||||||||    
T  45350297 ggacagtgcattattatatgcagaggtcggagttcgaaccccggacaccccacttattcac 45350357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 45359776 - 45359836
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||| |||||||||||||||||||| || ||||||||| ||||| | |||| ||||||||    
T  45359776 ggacagtgcattattatatgcagaggtcggagttcgaaccccggacaccccacttattcac 45359836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 49089351 - 49089291
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||| ||||||||||||||| ||||||||||||||| || || || ||| ||||||||    
T  49089351 ggacaatacattattatatgcaggggccgaagttcgaacccctgacattccacttattcac 49089291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 54854276 - 54854193
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||||||| ||| |  |||||||| ||||| ||| || ||||||||    
T  54854276 ccgtgagcatagctcagttggcagggac-atgcataattatatgcaggggctggggttcgaaccccggacatcacacttattcac 54854193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 55055917 - 55055984
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| |||||||||||  |||||||||||| |||| ||||||| |||||| |||||||| |||||    
T  55055917 ccgtgagcttagctcagttggtagggacaatgca-tattttatgcaggggccgaggttcgaaccccgga 55055984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 27921894 - 27921976
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||||||| |||||||||||  ||||||| ||||||||||||||||| |||||  |||||||| || || ||| || |||||||    
T  27921894 ccgtgagcatagctcagttggtagggaca-tgcattattatatgcaggggccggggttcgaaccccagacatctcacttattca 27921976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 30152125 - 30152172
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcaga 234  Q
    |||||||| ||||||||||| |||| |||||||||| |||||||||||    
T  30152125 ccgtgagcatagctcagttggcaggaacaatgcattgttatatgcaga 30152172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 41540635 - 41540600
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgc 231  Q
    ||||||||||||||||||||||||||||| ||||||    
T  41540635 tagctcagttgacagggacaatgcattataatatgc 41540600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 52330969 - 52330898
Alignment:
Q  225 tatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcacta 296  Q
    ||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||| || |||||    
T  52330969 tatatgcaggggccggggttcgaactccggacaccccacttattcactttaaaagtgaatttccaaccacta 52330898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 56546523 - 56546456
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    ||||||||||||||||||||||| |||||  ||||||||  | || | |||| |||||||||||||||    
T  56546523 ggacaatgcattattatatgcaggggccggggttcgaaccacagacaccccacttattcactttaaaa 56546456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 2304398 - 2304352
Alignment:
Q  225 tatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||| ||||| ||||||||||||||||| |||| ||||||||    
T  2304398 tatatgcagcggccggagttcgaacgccggataccccacttattcac 2304352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 12820503 - 12820457
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| ||||||||||| ||| ||||||||||| ||||||||||    
T  12820503 ccgtgagcatagctcagttggcagagacaatgcattgttatatgcag 12820457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 30615995 - 30616041
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| ||||||| |||||| |||||||||||| ||||||||||    
T  30615995 ccgtgagcatagctcaattgacatggacaatgcattgttatatgcag 30616041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 35803167 - 35803129
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  35803167 ggacaatgcattattatatgcagggaccgaagttcgaac 35803129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 46799570 - 46799612
Alignment:
Q  264 ttattcactttaaaagtaaatttctaatcactagaatacctga 306  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||    
T  46799570 ttattcactttaaaagtgaatttctaaccactagactacctga 46799612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 3544530 - 3544462
Alignment:
Q  186 tccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    ||||||| | |||||||||||  ||| |||||||||||||||||||| ||||||  |||||||| |||||    
T  3544530 tccgtgaacatagctcagttggtagg-acaatgcattattatatgcaaaggccggggttcgaaccccgga 3544462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 6481668 - 6481620
Alignment:
Q  200 tcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    ||||||| |||||||| ||||| |||||||||||||||||| ||||||||    
T  6481668 tcagttggcagggaca-tgcatgattatatgcagaggccgaggttcgaac 6481620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 53698054 - 53697997
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattatt 268  Q
    ||||||||||||||||||||||| |||||  |||||||| ||||| | |||| |||||    
T  53698054 ggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttatt 53697997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 4722538 - 4722510
Alignment:
Q  211 ggacaatgcattattatatgcagaggccg 239  Q
    |||||||||||||||||||||||||||||    
T  4722538 ggacaatgcattattatatgcagaggccg 4722510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 11375958 - 11375891
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| |||||||||||| ||||| | |||| |||||||||||| |||||  |||||||| |||||    
T  11375958 ccgtgagcttagctcagttgatagggatattgca-tattatatgcaggggccggggttcgaaccccgga 11375891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 17431378 - 17431425
Alignment:
Q  190 tgagcgtagctcagttgacagggacaatgcattattatatgcagaggcc 238  Q
    ||||| || ||||||||||||||||| |||||| |||||||||||||||    
T  17431378 tgagcataactcagttgacagggaca-tgcattgttatatgcagaggcc 17431425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 35832133 - 35832089
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgca 232  Q
    ||||||| |||||||||||| ||||||||||||| | ||||||||    
T  35832133 cgtgagcttagctcagttgatagggacaatgcataaatatatgca 35832089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 42044119 - 42044048
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||||||| ||||||||||| ||| |||| ||||| ||| ||||||| |||||| ||| |||| |||||    
T  42044119 gtctccgtgagcttagctcagttggcagagacattgcataatt-tatgcaggggccgaggtttgaaccccgga 42044048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 46222962 - 46222890
Alignment:
Q  215 aatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttc 287  Q
    |||||||||||||||||||  |  | ||||||||| || |||| || | ||||||||||||||||| ||||||    
T  46222962 aatgcattattatatgcaggagttggagttcgaactccagataccctatttattcactttaaaagtgaatttc 46222890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 49039542 - 49039459
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| ||||||||||| ||||||| ||||||| |||||||||| | | |  |||||||| ||||| | |||| ||||||||    
T  49039542 ccgtgagcatagctcagttggcagggac-atgcattgttatatgcagggactggggttcgaaccccggacaccccacttattcac 49039459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 51890798 - 51890865
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| ||||||||||| |||||||| ||||| ||| ||||||| |||||  |||||||| |||||    
T  51890798 ccgtgagcttagctcagttggcagggacattgcataatt-tatgcaggggccggggttcgaaccccgga 51890865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 7073 - 7192
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  7073 ccgtgagcatagctcagttgttagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccatttattcactttaaaagtgaattt 7172  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  7173 ctagccactaggctacctga 7192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 14981800 - 14981681
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| | ||| | |||| ||||||||||||||||| |||||    
T  14981800 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccctggacaccccacttattcactttaaaagtgaattt 14981701  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  14981700 ctagccactaggctacctga 14981681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 24470489 - 24470387
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||| ||| ||||||||||| ||| |||||||||||||||||| ||| ||||| ||||||||| ||||| |||||| ||||||||||||||||| |||||    
T  24470489 ccgtaagcatagctcagttggcagagacaatgcattattatatacaggggccggagttcgaaccccggaaatcccacttattcactttaaaagtgaattt 24470390  T
Q  287 cta 289  Q
    |||    
T  24470389 cta 24470387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 9064863 - 9064982
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| || || | |||| ||||| ||||||||||| |||||    
T  9064863 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccagacaccccacttatttactttaaaagtgaattt 9064962  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||  |||||||    
T  9064963 ctagccactaggctacctga 9064982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 6143962 - 6144062
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| || || ||  |||||||| ||||| | |||| ||||||||||||||| | |||||    
T  6143962 ccgtgagcatagctcagttggcagggacaatgcattattatatgtaggggtcg-ggttcgaaccccggacaccccacttattcactttaaaactgaattt 6144060  T
Q  287 ct 288  Q
    ||    
T  6144061 ct 6144062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 12089095 - 12089178
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| ||||| ||||||||| ||||| | |||| ||||||||    
T  12089095 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggagttcgaaccccggacaccccacttattcac 12089178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 28970165 - 28970232
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||||| |||||| ||||||||| |||||    
T  28970165 ccgtgagcgtagctcagttggcagggacaatgtattgttatatgca-aggccggagttcgaaccccgga 28970232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 32057032 - 32057114
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||||||| |||||||||||| ||| ||||||||||||||||||||| || ||| |||||||| || || |||||| |||||||    
T  32057032 ccgtgagcatagctcagttgatagg-acaatgcattattatatgcagtggtcgaggttcgaaccccagagatcccacttattca 32057114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 3448349 - 3448432
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||||||| ||||||| ||| ||||||||||||||| ||||| |||| |||||  |||||||| ||||| | |||| |||||||    
T  3448349 ccgtgagcatagctcaattggcagggacaatgcattgttatacgcaggggccggggttcgaaccccggacaccccacttattca 3448432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 24256942 - 24256997
Alignment:
Q  216 atgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||||||||||||| |||||| |||||||| ||||||| |||| ||||||||    
T  24256942 atgcattattatatgcaggggccgaggttcgaaccccggataccccacttattcac 24256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 2945593 - 2945639
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  2945593 ccgtgagcatagctcagttggcagggacaatgcattgttatatgcag 2945639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 5134532 - 5134470
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    |||| ||| ||||||||||| ||| ||||||||||| ||||||||||||||||  ||||||||    
T  5134532 ccgtaagcatagctcagttggcagagacaatgcattgttatatgcagaggccgcggttcgaac 5134470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 33629036 - 33628937
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatg-cagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatt 285  Q
    |||||| | ||||||||||| ||||||||||||||||||||||| ||    | |  |||||||| ||||| | |||| ||||||||||||||||| ||||    
T  33629036 ccgtgaacatagctcagttggcagggacaatgcattattatatgtca----ctggggttcgaaccccggacaccccacttattcactttaaaagtgaatt 33628941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 10377198 - 10377138
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||||||||||||||||||||||||  |||||||| ||| | | |||| ||||||||    
T  10377198 ggacaatgcattattatatgcagaggccggggttcgaaccccgaacaccccacttattcac 10377138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 14948878 - 14948831
Alignment:
Q  190 tgagcgtagctcagttgacagggacaatgcattattatatgcagaggcc 238  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||||||    
T  14948878 tgagcatagctcagttgacagggac-atacattattatatgcagaggcc 14948831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 29284118 - 29284234
Alignment:
Q  190 tgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttcta 289  Q
    ||||| || ||||||||  ||| |||||| ||||||||||| || |  ||  |||||||| ||||| | |||| ||||||||||||||||| ||||||||    
T  29284118 tgagcataactcagttggtaggaacaatgtattattatatgtagggatcggggttcgaaccccggacaccccacttattcactttaaaagtgaatttcta 29284217  T
Q  290 atcactagaatacctga 306  Q
      ||||||  |||||||    
T  29284218 gccactaggctacctga 29284234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 30566079 - 30566139
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||||||  |||||| |||| ||||| | |||| ||||||||    
T  30566079 ggacaatgcattattatatgcagaggttgaagtttgaaccccggacaccccacttattcac 30566139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 34396105 - 34396148
Alignment:
Q  212 gacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||    
T  34396105 gacaatgcattattatatgcaggggccggagttcgaactccgga 34396148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 21507275 - 21507201
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatt 285  Q
    |||||||| |||||||||||||| || || |||| |||| ||||| | |||| |||||||||||| |||| ||||    
T  21507275 ggacaatgtattattatatgcaggggtcggagtttgaactccggacaccccacttattcactttataagtgaatt 21507201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 9491809 - 9491749
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||||||||||||||| || |||||  |||||||| ||||| | |||| ||||||||    
T  9491809 ggacaatgcattattatatgtaggggccggggttcgaaccccggacaccccacttattcac 9491749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 11636680 - 11636728
Alignment:
Q  207 acagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||| |||||||||||||||||||||| || || ||||||||| |||||    
T  11636680 acagagacaatgcattattatatgcaggggtcggagttcgaaccccgga 11636728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 32541045 - 32540958
Alignment:
Q  190 tgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    ||||| ||| ||||||| ||| |||| |||||||||||||  ||||| || ||||||||| || |||| |||| |||||||| ||||||    
T  32541045 tgagcatagttcagttggcagagaca-tgcattattatatatagaggtcggagttcgaactccagataccccacttattcaccttaaaa 32540958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 34524873 - 34524924
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccg 239  Q
    |||||||| ||||||||||| ||||||| ||||||| |||||||||| |||||    
T  34524873 ccgtgagcatagctcagttggcagggac-atgcattgttatatgcaggggccg 34524924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 21970537 - 21970435
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |  ||  |||||||| ||||||| |||  ||||||||||||||||| |||||    
T  21970537 ccgtgagcatagctcagttgacagggacaatgcattattatatgcagggatcggggttcgaaccccggataccccgcttattcactttaaaagtgaattt 21970438  T
Q  287 cta 289  Q
    |||    
T  21970437 cta 21970435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 29034973 - 29035075
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  29034973 ccgtgagcatagctcacttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 29035072  T
Q  287 cta 289  Q
    |||    
T  29035073 cta 29035075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 34034348 - 34034466
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||||| | |||  |||||||| ||||| | |||| ||||||||||||||||| |||||    
T  34034348 ccgtgagcatagctcagttggcagggacaatacattattatatgcag-gaccggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 34034446  T
Q  287 ctaatcactagaatacctga 306  Q
    |||  ||||||| |||||||    
T  34034447 ctagccactagactacctga 34034466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 32527166 - 32527073
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttcta 289  Q
    ||||||||||| |||||||||||||||||||||||||| |||||  |||||||| || || | |||| ||||||||||||||||| ||||||||    
T  32527166 tagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccagacaacccacttattcactttaaaagtgaatttcta 32527073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 2304287 - 2304406
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||| || || ||  |||||||| ||||| | |||| ||||| ||||||||||| |||||    
T  2304287 ccgtgagcttagctcagttggcagggacaatgtattattatatgtaggggtcggggttcgaaccccggacaccccacttatttactttaaaagtgaattt 2304386  T
Q  287 ctaatcactagaatacctga 306  Q
    |||| ||||||  |||||||    
T  2304387 ctaaccactaggctacctga 2304406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 44187698 - 44187800
Alignment:
Q  184 tctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaa 283  Q
    ||||||||||| ||| ||||||| |||||| ||||||||||||||||||| || ||  |||||||| || || | |||| ||||||||||||||||| ||    
T  44187698 tctccgtgagcatagttcagttggcagggataatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcactttaaaagtgaa 44187797  T
Q  284 ttt 286  Q
    |||    
T  44187798 ttt 44187800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 41196040 - 41195979
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaa 248  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  41196040 ccgtgagcatagctcagttgacagggataatgcattgttatatgcagaggccggagttcgaa 41195979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 43870953 - 43871069
Alignment:
Q  190 tgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttcta 289  Q
    ||||| |||||| |||| || |||||||||||||||||||||||  ||||  |||||||  ||||| | |||| ||||||||||||||||| ||||||||    
T  43870953 tgagcatagctcggttggcaaggacaatgcattattatatgcaggagccggggttcgaatcccggacaccccacttattcactttaaaagtgaatttcta 43871052  T
Q  290 atcactagaatacctga 306  Q
      ||||||  |||||||    
T  43871053 gccactaggctacctga 43871069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 44487864 - 44487774
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||  |||||||||||| ||||||| ||||||||||||||||  ||||| ||||||||| ||||| |||||| |||||||| ||||||    
T  44487864 ccgtgagtatagctcagttgatagggaca-tgcattattatatgcaagggccggagttcgaaccccggacatcccacttattcaccttaaaa 44487774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 580880 - 580797
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||    
T  580880 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcac 580797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 2935814 - 2935902
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    |||||||| ||||||||||| |||| |||||||||| |||||||| | ||||| |||||||||  |||| | |||  ||||||||||||    
T  2935814 ccgtgagcatagctcagttggcaggaacaatgcattgttatatgcgggggccggagttcgaacctcggacaccccgcttattcacttta 2935902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 11133073 - 11133157
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  |||||||||||||| |||||||||| || ||  |||||||| ||||| | |||| ||||||||    
T  11133073 ccgtgagcatagctcagttggtagggacaatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcac 11133157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 17115641 - 17115554
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    |||||||| |||||||||||  ||| ||| || ||||||||||||| ||| || ||||||||| ||||| |||||| ||||||||||||    
T  17115641 ccgtgagcatagctcagttggtagg-acactgtattattatatgcaaaggtcggagttcgaaccccggacatcccatttattcacttta 17115554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 30474292 - 30474209
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| ||||||||||||||||||||| |||||| |||||||| || || | |||| ||||||||    
T  30474292 ccgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggccgaggttcgaaccccagacaccccacttattcac 30474209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 7086251 - 7086369
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| |||||||||||  |||| |||||||||||||||||||| |||||   ||||||| ||| | | ||||||||||||| ||| |||   | ||    
T  7086251 ccgtgagcatagctcagttggtaggg-caatgcattattatatgcaggggccgggattcgaaccccgaacaccccaattattcaccttataaggtgaatt 7086349  T
Q  287 ctaatcactagaatacctga 306  Q
    |||| ||||||| |||||||    
T  7086350 ctaaccactagactacctga 7086369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 14307795 - 14307701
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||||||| | |||||||||  ||||||| |||||| |||||||||| || ||| |||||||| ||| | | |||| |||||||||||||||    
T  14307795 gtctccgtgagcatggctcagttggtagggaca-tgcattgttatatgcaggggtcgaggttcgaaccccgaacaccccacttattcactttaaaa 14307701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 44422128 - 44422223
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcactagaatacctga 306  Q
    ||||||||||||||||||||||| |  || ||||||||| ||||| | |||| |||||||||||| |||  || |||||| ||||||  |||||||    
T  44422128 ggacaatgcattattatatgcagggatcggagttcgaaccccggacaccccacttattcactttataaggtaaattctaaccactaggctacctga 44422223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 3037708 - 3037636
Alignment:
Q  199 ctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| | ||||||||||||| |||||||||| |||||  |||||||| ||||| | |||| ||||||||    
T  3037708 ctcagttggctgggacaatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcac 3037636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 3955922 - 3955994
Alignment:
Q  200 tcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcact 272  Q
    ||||||| || ||||||| |||| ||| ||| |||||||| | ||||||| |||||||||||| |||||||||    
T  3955922 tcagttggcaaggacaatacattgttacatgtagaggccggaattcgaactccggatatcccacttattcact 3955994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 16028182 - 16028118
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    ||||||||||||||||||||||| || ||  |||||||| || || |||||| ||||||||||||    
T  16028182 ggacaatgcattattatatgcagtggtcggggttcgaactccagacatcccacttattcacttta 16028118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 17154670 - 17154730
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| |||||  |||||||| ||||| | |||| ||||||||    
T  17154670 ggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcac 17154730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 20684271 - 20684330
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    |||||| ||||||||||||||||||| || ||||||||||||||| || || |||||||||    
T  20684271 gtgagcttagctcagttgacagggac-atacattattatatgcaggggtcggagttcgaac 20684330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 36520877 - 36520794
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||  ||| |||||||||||||||||| || || ||  |||||||| ||||| | |||| ||||||||    
T  36520877 ccgtgagcgtagctcagttggtagg-acaatgcattattatatgtaggggtcggggttcgaaccccggacaccccacttattcac 36520794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 22297548 - 22297466
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||| |||||||||||  ||| ||||||||||||||||||||| ||| |  |||||||| ||||| | |||| ||||||||    
T  22297548 cgtgagcatagctcagttggtagg-acaatgcattattatatgcaggggcaggggttcgaaccccggacaccccatttattcac 22297466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 39086754 - 39086723
Alignment:
Q  199 ctcagttgacagggacaatgcattattatatg 230  Q
    ||||||||||||||||||||||||||||||||    
T  39086754 ctcagttgacagggacaatgcattattatatg 39086723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 39334978 - 39334892
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttt 274  Q
    |||||||| || |||||||| |||||||| ||||||||||||| ||| ||| |  |||||||| || || |||||| |||||||||||    
T  39334978 ccgtgagcataactcagttggcagggaca-tgcattattatatacaggggctggggttcgaactccagacatcccacttattcacttt 39334892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 5521289 - 5521228
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    |||||||| |||||||||||| ||||| | ||||| ||||||||||| |||||| ||||||||    
T  5521289 ccgtgagcttagctcagttgatagggatattgcat-attatatgcaggggccgaggttcgaac 5521228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 24586654 - 24586719
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatccca 262  Q
    |||||||||||| |||||| |||||||||| ||||||| ||||| ||||||||| ||| | ||||||    
T  24586654 tagctcagttgaaagggac-atgcattattgtatgcagcggccggagttcgaaccccgaacatccca 24586719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 29664600 - 29664646
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||| ||||||| ||| ||||||||||||||| ||||||||||    
T  29664600 ccgtgagcatagctcaattggcagggacaatgcattgttatatgcag 29664646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 5029201 - 5029137
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaa 248  Q
    ||||| |||||| |||||||||||  ||| | | ||||||||||||||||||||||| ||||||||    
T  5029201 gtctctgtgagcatagctcagttggtaggtata-tgcattattatatgcagaggccggagttcgaa 5029137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 17974889 - 17974848
Alignment:
Q  208 cagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||    
T  17974889 caggggcaatgcattgttatatgcagaggccgaggttcgaac 17974848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 8234889 - 8234806
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| ||||| |||||||||||| || |||||  |||||||| ||||| | |||| ||||||||    
T  8234889 ccgtgagcatagctcagttggtagg-acaatacattattatatgtaggggccggggttcgaaccccggacaccccacttattcac 8234806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 20122572 - 20122505
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| |||||||||||  ||| |||||||||||||||||| || |||||  |||||||| |||||    
T  20122572 ccgtgagcatagctcagttggtagg-acaatgcattattatatgtaggggccggggttcgaaccccgga 20122505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 32943360 - 32943436
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta-aaagtaaattt 286  Q
    ||||||||||||||||||||||||||| |  |||||||   |||| | |||| |||||||| ||| |||||||||||    
T  32943360 ggacaatgcattattatatgcagaggctggggttcgaatttcggacaccccacttattcaccttataaagtaaattt 32943436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 36665451 - 36665515
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    ||||||||||||||||||||||| |||||  ||||||||  |||| | |||| ||||||| ||||    
T  36665451 ggacaatgcattattatatgcaggggccggggttcgaacctcggacaccccacttattcatttta 36665515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 31475938 - 31475821
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||| ||| |  |||||||| || || | |||| ||||||||||||||||| |||||    
T  31475938 ccgtgagcatagctcagttggcagggacattgcattattatatgcaggggctggggttcgaacccctgacaccccacttattcactttaaaagtgaattt 31475839  T
Q  287 ctaatcactagaatacct 304  Q
    |||  ||||||| |||||    
T  31475838 ctagccactagactacct 31475821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 8742655 - 8742749
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaa 290  Q
    |||||||||||||||||||||| ||||||||||||||| ||  | ||||||||  || ||||  ||| ||||||||||||||||| |||||||||    
T  8742655 tagctcagttgacagggacaatacattattatatgcaggggttggagttcgaatcccagatactccatttattcactttaaaagtgaatttctaa 8742749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 19126743 - 19126837
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaa 290  Q
    |||||||||||  ||| ||||||||||||||||| ||| ||| || |||||||| ||||| | |||| ||||||||||||||||| |||||||||    
T  19126743 tagctcagttggtaggaacaatgcattattatatacaggggctgaggttcgaaccccggacaccccacttattcactttaaaagtgaatttctaa 19126837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 24304381 - 24304279
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||| ||| ||||| | |||||||| ||||||||||||||||||||| || ||  |||||||| ||| | | |||| |||||||||||||||||||||||    
T  24304381 ccgtaagcatagcttaattgacaggaacaatgcattattatatgcaggggtcggggttcgaactccgaacaccccatttattcactttaaaagtaaattt 24304282  T
Q  287 cta 289  Q
    |||    
T  24304281 cta 24304279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 41139084 - 41139186
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| || ||  |||||||  ||||| |   || ||||||||||||||||| |||||    
T  41139084 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggtcggggttcgaatcccggacacttcacttattcactttaaaagtgaattt 41139183  T
Q  287 cta 289  Q
    |||    
T  41139184 cta 41139186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 21285451 - 21285367
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||| |||||  |||||||| ||||| | |||| ||||||||    
T  21285451 ccgtgagcatagctcagttggcagggacaatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcac 21285367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 14818463 - 14818361
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||| || ||  |||| ||| ||  | | |||| ||||||||||||||||| |||||    
T  14818463 ccgtgagcatagctcagttggcagggacagtgcattattatatgcaggggtcggggttcaaaccccaaacaccccacttattcactttaaaagtgaattt 14818364  T
Q  287 cta 289  Q
    |||    
T  14818363 cta 14818361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 15265461 - 15265359
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||| || ||  |||| ||| ||  | | |||| ||||||||||||||||| |||||    
T  15265461 ccgtgagcatagctcagttggcagggacagtgcattattatatgcaggggtcggggttcaaaccccaaacaccccacttattcactttaaaagtgaattt 15265362  T
Q  287 cta 289  Q
    |||    
T  15265361 cta 15265359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 38451862 - 38451944
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||||  |||||||  ||||| | |||| ||||||||    
T  38451862 gtgagcatagctcagttgacagggacaatgcattgttatatgcaggggccggggttcgaatcccggacaccccacttattcac 38451944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 20527518 - 20527438
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaa 276  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||| ||| | | | || |||||||||||||    
T  20527518 tagctcagttggcagggacaatgcattgttatatgcaggggccggagttcgaaccccgaacacctcacttattcactttaa 20527438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 24396966 - 24397061
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttctaatcactagaatacctga 306  Q
    ||||||||||||||||||||||| || || ||||||||| | ||| | || | ||||||||||||||||| ||||||||  ||||||  |||||||    
T  24396966 ggacaatgcattattatatgcaggggtcggagttcgaaccctggacaccctacttattcactttaaaagtgaatttctagccactaggctacctga 24397061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 41417373 - 41417274
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||| ||| ||||| ||||||||||| || ||  |||||||| || || | |||| ||||||||||||||||| |||||    
T  41417373 ccgtgagcatagctcagttggcaggaacagtgcatcattatatgcaggggtcggggttcgaaccccagacaccccacttattcactttaaaagtgaattt 41417274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 29658370 - 29658286
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| ||||||| ||| ||| ||||||||||| |||||||||| |||||  |||||||| ||||| | |||| ||||||||    
T  29658370 ccgtgagcatagctcaattggcagcgacaatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcac 29658286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 34948104 - 34948187
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| |||||||||||| |||||||| |||||| |||||||| ||||| | |||| ||||||||    
T  34948104 ccgtgagcatagctcagttggtagg-acaatgcattatcatatgcagtggccgaggttcgaaccccggacaccccacttattcac 34948187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 32814821 - 32814907
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||||||||||| |||||||||||  ||||||| ||||||||||||||||| || || ||||||||  ||||| | |||| |||||||    
T  32814821 gtctccgtgagcatagctcagttggtagggaca-tgcattattatatgcaggggtcggagttcgaatcccggacaccccacttattca 32814907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 23685648 - 23685568
Alignment:
Q  190 tgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||| |||||  |||||||| || || | |||| ||||||||    
T  23685648 tgagcatagctcagttgatagg-acaatgcattattatatgcaggggccggggttcgaaccccagacaccccacttattcac 23685568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 38778753 - 38778696
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattatt 268  Q
    ||||||||||||||||||||||| |||||| |||| ||| ||||| |||||| |||||    
T  38778753 ggacaatgcattattatatgcaggggccgaggttctaaccccggacatcccacttatt 38778696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 4169073 - 4169157
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| ||||||||||| ||||||||||| ||| |||||||||  |||||  ||| |||| ||||| | |||| ||||||||    
T  4169073 ccgtgagcatagctcagttggcagggacaatgtattgttatatgcaagggccggggtttgaaccccggacaccccacttattcac 4169157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 7465464 - 7465531
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| ||||||||||| ||| |||| ||||||||||||||||| |||||  |||||||| |||||    
T  7465464 ccgtgagcatagctcagttggcagagaca-tgcattattatatgcaggggccggggttcgaaccccgga 7465531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 22966032 - 22965972
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| |||||| |||||||| || || | |||| ||||||||    
T  22966032 ggacaatgcattattatatgcaggggccgaggttcgaaccccagacaccccacttattcac 22965972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 35195841 - 35195924
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||| ||| ||||||||||| |||||||| ||||||||||||||||| |||||  |||||||| ||| | | |||| ||||||||    
T  35195841 ccgtaagcatagctcagttggcagggaca-tgcattattatatgcaggggccggggttcgaaccccgaacaccccatttattcac 35195924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 17305491 - 17305433
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaag 242  Q
    |||||||||||| ||||||||||| ||||||| ||||||| |||||||||  ||||||||    
T  17305491 gtctccgtgagcatagctcagttggcagggac-atgcattgttatatgcaagggccgaag 17305433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 22660738 - 22660800
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaac 249  Q
    |||||||| ||| |||||||||||||| |||||||| ||||||| || |||||  ||||||||    
T  22660738 ccgtgagcatagttcagttgacagggataatgcattgttatatgtaggggccggggttcgaac 22660800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 9351042 - 9351122
Alignment:
Q  197 agctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||||||||||||| ||| |||||||||||||| || || ||||||||| ||| | |  ||| |||||||| ||||||    
T  9351042 agctcagttgacagggac-atgtattattatatgcaggggtcggagttcgaaccccgaaaactccacttattcaccttaaaa 9351122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 27047809 - 27047729
Alignment:
Q  190 tgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||| |||||||||||  ||| ||||||||||||||||||||| |||||  ||||||||  |||| | |||| ||||||||    
T  27047809 tgagcatagctcagttggtagg-acaatgcattattatatgcaggggccggggttcgaacctcggacaccccatttattcac 27047729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 37449586 - 37449517
Alignment:
Q  209 agggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    ||||| ||||||||||||||||||| || || |||| ||||   ||| |||||| |||||||||||||||    
T  37449586 agggataatgcattattatatgcaggggtcggagtttgaaccttggacatcccacttattcactttaaaa 37449517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 21086125 - 21086169
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    ||||||||||||||||||||||| |  |||||||||||| |||||    
T  21086125 ggacaatgcattattatatgcagggatcgaagttcgaactccgga 21086169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 30566500 - 30566568
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    |||||||| |||||| |||| ||||||||||||||| ||||||| |  |||||  |||||||| |||||    
T  30566500 ccgtgagcatagctcggttggcagggacaatgcattgttatatgtaagggccggggttcgaaccccgga 30566568  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 30644190 - 30644250
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||| |||||  |||||||| || || | |||| ||||||||    
T  30644190 ggacaatgcattattatatgcaggggccggtgttcgaaccccagacaccccacttattcac 30644250  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 31694091 - 31694155
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    ||||||||||||||||||||||| || |||  ||||||| ||||| | |||| ||||| ||||||    
T  31694091 ggacaatgcattattatatgcaggggacgagattcgaactccggacaccccacttatttacttta 31694155  T

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Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 36316071 - 36315988
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    |||||||| |||||||||||  ||| | ||||||||||||||||||| |||||  ||||||||  |||| | |||| ||||||||    
T  36316071 ccgtgagcatagctcagttggtagg-ataatgcattattatatgcaggggccggggttcgaacctcggacaccccacttattcac 36315988  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 41853593 - 41853541
Alignment:
Q  217 tgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattc 269  Q
    |||||| |||||||||||||||| ||||||||| ||| ||| |||| ||||||    
T  41853593 tgcattgttatatgcagaggccggagttcgaaccccgaataccccacttattc 41853541  T

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Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 44437899 - 44437855
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccgga 255  Q
    ||||||||||||||||||||||| |||||  |||||||| |||||    
T  44437899 ggacaatgcattattatatgcaggggccggggttcgaaccccgga 44437855  T

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Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 45011732 - 45011672
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||||||||   ||||||||  |||| | |||| ||||||||    
T  45011732 ggacaatgcattattatatgcagaggccagggttcgaacctcggagaccccacttattcac 45011672  T

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Target: scaffold0070 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 12564 - 12664
Alignment:
Q  189 gtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaatttct 288  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| || |   ||||||||  |||||| |||| ||||||||||||||||| |||||||    
T  12564 gtgagcatagctcagttggcagggacaatgcattattatatgcaggggtcagggttcgaacctcggataccccatttattcactttaaaagtgaatttct 12663  T
Q  289 a 289  Q
    |    
T  12664 a 12664  T

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Target: scaffold0809 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 4903 - 4802
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| || ||  |||||||  ||||| | |||| ||||||||||||||||| |||||    
T  4903 ccgtgagcatagctcagttggcagggacaatgcattattatatgcag-gggcggggttcgaatcccggacaccccacttattcactttaaaagtgaattt 4805  T
Q  287 cta 289  Q
    |||    
T  4804 cta 4802  T

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Target: scaffold0036 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 25023 - 25106
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||| |  |||||||| ||||| | |||| |||||||    
T  25023 ccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggctggggttcgaaccccggacaccccacttattca 25106  T

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Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 108450 - 108368
Alignment:
Q  196 tagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    ||||||| ||| |||| ||||||||||||||||||||| ||| || |||| ||| ||||| | |||| |||||||||||||||    
T  108450 tagctcaattggcaggaacaatgcattattatatgcaggggctgaggttcaaaccccggacaccccacttattcactttaaaa 108368  T

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Target: scaffold1086 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1086
Description:

Target: scaffold1086; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 2509 - 2569
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||||||||  |||||| |||| ||||| | |||| ||||||||    
T  2509 ggacaatgcattattatatgcagaggttgaagtttgaaccccggacaccccacttattcac 2569  T

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Target: scaffold0112 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 18029 - 17913
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagtaaattt 286  Q
    |||||||| ||||||| |||  |||||||||||||| |||||||||| ||| |  |||||||| || || |  ||| ||||||||||||||| | ||||     
T  18029 ccgtgagcatagctcaattggtagggacaatgcattgttatatgcaggggctggggttcgaaccccagacactccacttattcactttaaaattgaattc 17930  T
Q  287 ctaatcactagaatacc 303  Q
    |||  ||||||| ||||    
T  17929 ctagccactagactacc 17913  T

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Target: scaffold0178 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 4322 - 4408
Alignment:
Q  188 cgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcacttta 275  Q
    ||||||| |||||||||||| ||| ||||| ||||||||||||||| || ||  |||||||| ||||| |  ||| ||||||||||||    
T  4322 cgtgagcatagctcagttgatagg-acaatacattattatatgcaggggtcggggttcgaaccccggacactccacttattcacttta 4408  T

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Target: scaffold0178; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 16086 - 16155
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaagt 280  Q
    ||||||||||||||||||||||| |  || ||||||||| ||||| |||| | |||||||| ||| ||||    
T  16086 ggacaatgcattattatatgcagggatcggagttcgaaccccggacatcctacttattcaccttataagt 16155  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 34130 - 34040
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcactttaaaa 278  Q
    |||||||| ||||||||||| ||||||| ||||||| |||||||||| |||||  |||||||  ||||| |  ||| |||||| ||||||||    
T  34130 ccgtgagcatagctcagttggcagggac-atgcattgttatatgcaggggccggggttcgaattccggacactccacttattctctttaaaa 34040  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 451473 - 451390
Alignment:
Q  187 ccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattca 270  Q
    |||||||| ||||||||||  || |||||||||||| ||||||| || |||||  |||||||| ||||| | |||| |||||||    
T  451473 ccgtgagcatagctcagttagcaaggacaatgcattgttatatgtaggggccggggttcgaactccggacaccccacttattca 451390  T

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Target: scaffold0712 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 4514 - 4563
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||||||| ||||||||||| ||||||| ||||||| ||||||||||    
T  4514 gtctccgtgagcatagctcagttggcagggac-atgcattgttatatgcag 4563  T

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Target: scaffold0709 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 4534 - 4583
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcag 233  Q
    |||||||||||| ||||||||||| ||||||| ||||||| ||||||||||    
T  4534 gtctccgtgagcatagctcagttggcagggac-atgcattgttatatgcag 4583  T

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Target: scaffold0219 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 21065 - 21009
Alignment:
Q  183 gtctccgtgagcgtagctcagttgacagggacaatgcattattatatgcagaggccga 240  Q
    |||||||||| | ||||||||||||||  |||| |||||| |||||||||||||||||    
T  21065 gtctccgtgaacatagctcagttgacaaagaca-tgcattgttatatgcagaggccga 21009  T

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Target: scaffold0765 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 765 - 825
Alignment:
Q  211 ggacaatgcattattatatgcagaggccgaagttcgaacgccggatatcccaattattcac 271  Q
    ||||||||||||||||||||| ||||| || |||||||| | ||| | |||| ||||||||    
T  765 ggacaatgcattattatatgcggaggctgaggttcgaactctggacaccccacttattcac 825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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