View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15278_low_2 (Length: 664)
Name: NF15278_low_2
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15278_low_2 |
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| [»] scaffold0321 (2 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 259 - 648
Target Start/End: Original strand, 16003 - 16392
Alignment:
| Q |
259 |
ttcacttttttgaaggtacttttactgtggctgtgtttggctacactggtggtaggagattatgctccatcaccacaaaatccattcgttaacttcacac |
358 |
Q |
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| T |
16003 |
ttcactttttttaaggtacttttactgtggctgtgtttggctacactggtggttggagattatgctccatcaccacaaaatccattcgttaacttcacac |
16102 |
T |
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| Q |
359 |
acattccttcacctccacctccacatcagcaggctcctatgaagtcacctcttcctgcacctccaccgatgaagtcacctcttcctccacctccaccggc |
458 |
Q |
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| T |
16103 |
acattccttcacctccacctccacatcagcaggctcctatgaagtcacctcttcctgcacctccaccgatgaagtcacctcttcctccacctccacaggc |
16202 |
T |
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| Q |
459 |
ctctccaccggcctcaagttcattcggaggtctgggttgggctgttttggtgattggtgtcattgcagcgttctttgtgggttactgctgcagaatccgc |
558 |
Q |
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| T |
16203 |
ctctccaccggcctcaagttcattcggaggtctgggttgggctgttttggtgattggtgtcattgcagcgttctttgtgggttactgctgcagaatccgc |
16302 |
T |
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| Q |
559 |
catagtggagtcgaagcagctgaagaagagtctattgatgaaaatgatttgacataggtggatgaagtatgattataccataggcatatg |
648 |
Q |
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| T |
16303 |
catagtggagtcgaagcagctgaagaagagtctattgatgaaaatgatttgacataggtggatgaagtatgattataccataggcatatg |
16392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 15706 - 15927
Alignment:
| Q |
18 |
gatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaatcctcttttgtcaatcactggatggatgatagaggtgaatcctct |
117 |
Q |
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| T |
15706 |
gatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaatcctcttttgtcaatcactggatggatgatagaggtgaatcctct |
15805 |
T |
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| Q |
118 |
tttgttggtaaacgatatagcaatgcttaacattgtttctattattctatatatagcagttctctttattattttttcgtcaaaaacaaataagaagcaa |
217 |
Q |
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| T |
15806 |
tttgtcggtaaacgatatagcaatgcttaacattgtttctattattctatatatagcagttctctttattattttttcgtcaaaaacaaataagaagcaa |
15905 |
T |
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| Q |
218 |
ggtagataacgtttgtatataa |
239 |
Q |
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| T |
15906 |
ggtagataaagtttgtatataa |
15927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 8666674 - 8666727
Alignment:
| Q |
18 |
gatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaa |
72 |
Q |
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| T |
8666674 |
gatttgtataactt-gcaagtgtttgagtgtttaatctgccagttcttgtttgaa |
8666727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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