View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15278_low_22 (Length: 212)

Name: NF15278_low_22
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15278_low_22
NF15278_low_22
[»] chr2 (3 HSPs)
chr2 (14-67)||(12757217-12757270)
chr2 (81-123)||(32699789-32699831)
chr2 (77-186)||(12757055-12757175)
[»] chr7 (2 HSPs)
chr7 (81-127)||(44718831-44718877)
chr7 (81-118)||(31723422-31723459)
[»] chr5 (1 HSPs)
chr5 (81-126)||(12285620-12285665)
[»] chr1 (4 HSPs)
chr1 (81-118)||(12664669-12664706)
chr1 (84-125)||(32969668-32969709)
chr1 (81-125)||(42577204-42577248)
chr1 (85-125)||(47835737-47835777)
[»] chr4 (4 HSPs)
chr4 (81-129)||(41536917-41536965)
chr4 (81-129)||(44918231-44918279)
chr4 (80-113)||(54103324-54103357)
chr4 (81-125)||(51298714-51298758)
[»] scaffold0121 (1 HSPs)
scaffold0121 (82-123)||(2376-2417)
[»] chr3 (2 HSPs)
chr3 (85-126)||(37436957-37436998)
chr3 (81-129)||(38330770-38330818)
[»] chr8 (1 HSPs)
chr8 (81-125)||(10967211-10967255)


Alignment Details
Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 12757270 - 12757217
Alignment:
Q  14 caaagggagaggatcaagggcttctcaggactctcaagtgttatcattagatgg 67  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12757270 caaaaggagaggatcaagggcttctcaggactctcaagtgttatcattagatgg 12757217  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 32699789 - 32699831
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaaattca 123  Q
    ||||||||||||| | |||| ||||||||||||||||||||||    
T  32699789 ttgcatatattatgttttgtctttatcaattgagttaaattca 32699831  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 12757175 - 12757055
Alignment:
Q  77 agaattgcatatattatatattgtttttatcaattgagttaaattcacgaaga-----------attgcaaacaagtggtagataatatactcgctnnnn 165  Q
    ||||| |||||||||||| |||||| ||| ||| ||||||||||||| |||||           |||||||||| |||||||||||||||||| ||        
T  12757175 agaatggcatatattatacattgttcttaccaactgagttaaattcatgaagaccattagataaattgcaaacatgtggtagataatatactcactaaaa 12757076  T
Q  166 nnntatagatcttctttttct 186  Q
       ||||||||||||||||||    
T  12757075 aaatatagatcttctttttct 12757055  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 44718831 - 44718877
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaaattcacgaa 127  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||    
T  44718831 ttgcatatattatatattgtttatatcaattgagttaaactcacgaa 44718877  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 31723422 - 31723459
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaa 118  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  31723422 ttgcatatattatatattgttcttatcaactgagttaa 31723459  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 12285620 - 12285665
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaaattcacga 126  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||    
T  12285620 ttgcatatattatatattgtctttatcaactgagttaagttcacga 12285665  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 12664706 - 12664669
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaa 118  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  12664706 ttgcatatattatatattgtttttagcaattgagttaa 12664669  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 32969668 - 32969709
Alignment:
Q  84 catatattatatattgtttttatcaattgagttaaattcacg 125  Q
    |||||||||||||||||||||||||| |||  ||||||||||    
T  32969668 catatattatatattgtttttatcaactgacctaaattcacg 32969709  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 42577248 - 42577204
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaaattcacg 125  Q
    |||||| ||||||||  |||||||||||| |||||||||||||||    
T  42577248 ttgcatgtattatattatgtttttatcaactgagttaaattcacg 42577204  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 47835737 - 47835777
Alignment:
Q  85 atatattatatattgtttttatcaattgagttaaattcacg 125  Q
    ||||||||| ||||||||||||||| ||||||||| |||||    
T  47835737 atatattatgtattgtttttatcaactgagttaaactcacg 47835777  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 41536965 - 41536917
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaaattcacgaaga 129  Q
    ||||||||||||| ||||||  ||||||||||||||||| |||||||||    
T  41536965 ttgcatatattatgtattgtccttatcaattgagttaaactcacgaaga 41536917  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 44918231 - 44918279
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaaattcacgaaga 129  Q
    |||||||||||||||||||| | |||||| ||||||||| |||||||||    
T  44918231 ttgcatatattatatattgtctctatcaactgagttaaactcacgaaga 44918279  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 54103324 - 54103357
Alignment:
Q  80 attgcatatattatatattgtttttatcaattga 113  Q
    ||||||||||||||| ||||||||||||||||||    
T  54103324 attgcatatattatacattgtttttatcaattga 54103357  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 51298714 - 51298758
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaaattcacg 125  Q
    ||||||||||||||||||||  ||||||| |||||||| ||||||    
T  51298714 ttgcatatattatatattgtccttatcaactgagttaagttcacg 51298758  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 2376 - 2417
Alignment:
Q  82 tgcatatattatatattgtttttatcaattgagttaaattca 123  Q
    |||||||||||| |||||||| ||||||||||||||| ||||    
T  2376 tgcatatattatttattgtttatatcaattgagttaagttca 2417  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 37436998 - 37436957
Alignment:
Q  85 atatattatatattgtttttatcaattgagttaaattcacga 126  Q
    |||||||||| |||||||||||||| |||||||| |||||||    
T  37436998 atatattatacattgtttttatcaagtgagttaagttcacga 37436957  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 38330770 - 38330818
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaaattcacgaaga 129  Q
    |||||||||||||||||||||| || |||||||| |||  |||||||||    
T  38330770 ttgcatatattatatattgtttataccaattgagctaagctcacgaaga 38330818  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 10967255 - 10967211
Alignment:
Q  81 ttgcatatattatatattgtttttatcaattgagttaaattcacg 125  Q
    |||||||||||||  |||||| ||||||||||||||||| |||||    
T  10967255 ttgcatatattatgcattgttcttatcaattgagttaaactcacg 10967211  T

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