View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15278_low_24 (Length: 204)
Name: NF15278_low_24
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15278_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 43759521 - 43759338
Alignment:
| Q |
1 |
aaacatgaaagggtctaagagttataggtgtccactttgacccttcataggtctccttattacagcaaaacattactaccgccacaactgcattgcatct |
100 |
Q |
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| T |
43759521 |
aaacatgaaagggtctaagagttataggtgtccactttgaaccttcataggtctccttattacagcaaaacattactaccaccacaactgcattgcatct |
43759422 |
T |
|
| Q |
101 |
cacatttttaattccttgggctctgtgt-gaactcctaccttttaatgcttcctctacctcctatcctatgtctttcttagtac |
183 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43759421 |
cacatttttaattccttgggctctgtgtggaactcctaccttttaatgcttcctctacctcctatcctatgtctttcttagtac |
43759338 |
T |
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