View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15278_low_4 (Length: 567)

Name: NF15278_low_4
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15278_low_4
NF15278_low_4
[»] chr8 (12 HSPs)
chr8 (44-562)||(10800097-10800615)
chr8 (331-395)||(41663971-41664035)
chr8 (331-395)||(8301276-8301340)
chr8 (347-395)||(17660330-17660378)
chr8 (331-395)||(20492251-20492315)
chr8 (322-393)||(3758267-3758338)
chr8 (350-393)||(6902412-6902455)
chr8 (350-395)||(13878090-13878135)
chr8 (347-395)||(36158642-36158690)
chr8 (365-475)||(8306663-8306773)
chr8 (334-395)||(43247138-43247199)
chr8 (347-395)||(28452711-28452759)
[»] chr7 (21 HSPs)
chr7 (44-562)||(47550111-47550629)
chr7 (44-562)||(47554576-47555094)
chr7 (53-562)||(22864164-22864673)
chr7 (161-540)||(20703932-20704311)
chr7 (161-540)||(20871976-20872355)
chr7 (143-556)||(588170-588583)
chr7 (139-540)||(12122968-12123369)
chr7 (139-540)||(37074029-37074430)
chr7 (366-510)||(27278626-27278769)
chr7 (331-395)||(17722108-17722172)
chr7 (331-395)||(29969447-29969511)
chr7 (351-393)||(8772337-8772379)
chr7 (331-395)||(45460785-45460849)
chr7 (351-393)||(18768896-18768938)
chr7 (420-504)||(4936622-4936706)
chr7 (145-213)||(24820494-24820562)
chr7 (347-396)||(34233190-34233239)
chr7 (356-393)||(37938952-37938989)
chr7 (158-255)||(48779403-48779500)
chr7 (347-395)||(13637266-13637314)
chr7 (331-395)||(34207803-34207867)
[»] chr5 (16 HSPs)
chr5 (53-562)||(29326494-29327003)
chr5 (143-300)||(11267411-11267568)
chr5 (139-252)||(6677321-6677434)
chr5 (331-395)||(23239854-23239918)
chr5 (347-396)||(36257264-36257313)
chr5 (347-395)||(1822338-1822386)
chr5 (347-395)||(6050729-6050777)
chr5 (420-504)||(42515282-42515366)
chr5 (334-393)||(19509611-19509670)
chr5 (347-393)||(22561406-22561452)
chr5 (351-393)||(38358960-38359002)
chr5 (322-395)||(25856042-25856115)
chr5 (451-520)||(30508501-30508570)
chr5 (451-520)||(30548844-30548913)
chr5 (347-395)||(6999606-6999654)
chr5 (331-395)||(27164698-27164762)
[»] chr6 (11 HSPs)
chr6 (44-562)||(5389934-5390452)
chr6 (139-540)||(18293834-18294235)
chr6 (139-540)||(2895585-2895987)
chr6 (331-395)||(2555077-2555141)
chr6 (347-395)||(11059465-11059513)
chr6 (152-241)||(12150236-12150325)
chr6 (334-395)||(13087019-13087080)
chr6 (356-393)||(21550344-21550381)
chr6 (331-395)||(1307270-1307334)
chr6 (425-471)||(17712123-17712169)
chr6 (331-395)||(17604937-17605001)
[»] chr3 (20 HSPs)
chr3 (44-428)||(16665265-16665650)
chr3 (56-540)||(10755362-10755846)
chr3 (139-556)||(17152233-17152650)
chr3 (139-540)||(3516066-3516467)
chr3 (229-540)||(9827155-9827466)
chr3 (143-384)||(8596643-8596884)
chr3 (113-300)||(30737877-30738064)
chr3 (239-556)||(23823194-23823511)
chr3 (139-298)||(9820442-9820601)
chr3 (423-481)||(16672075-16672133)
chr3 (347-396)||(8131462-8131511)
chr3 (331-396)||(16185784-16185849)
chr3 (334-395)||(21739097-21739158)
chr3 (347-395)||(30165926-30165974)
chr3 (422-465)||(6924060-6924103)
chr3 (350-395)||(19918835-19918880)
chr3 (362-411)||(52906630-52906679)
chr3 (335-395)||(2365755-2365815)
chr3 (331-395)||(12333691-12333755)
chr3 (229-297)||(12953887-12953955)
[»] chr4 (20 HSPs)
chr4 (44-365)||(36952488-36952806)
chr4 (139-508)||(23156621-23156990)
chr4 (139-540)||(15647506-15647907)
chr4 (202-540)||(25136461-25136799)
chr4 (143-556)||(17825204-17825617)
chr4 (335-504)||(47420281-47420450)
chr4 (331-395)||(1827144-1827208)
chr4 (347-395)||(7661911-7661959)
chr4 (347-395)||(20397054-20397102)
chr4 (350-393)||(26695420-26695463)
chr4 (420-510)||(23641079-23641169)
chr4 (420-510)||(23646737-23646827)
chr4 (350-542)||(54685898-54686090)
chr4 (347-396)||(19161772-19161821)
chr4 (347-396)||(40689556-40689605)
chr4 (161-245)||(137430-137514)
chr4 (347-395)||(29552404-29552452)
chr4 (347-395)||(10561928-10561976)
chr4 (347-395)||(23280292-23280340)
chr4 (179-255)||(28049441-28049517)
[»] scaffold0003 (1 HSPs)
scaffold0003 (134-540)||(223152-223573)
[»] chr2 (13 HSPs)
chr2 (139-540)||(21965975-21966376)
chr2 (330-395)||(9667609-9667674)
chr2 (351-393)||(28399155-28399197)
chr2 (347-396)||(6724255-6724304)
chr2 (182-258)||(37326982-37327058)
chr2 (339-393)||(4221544-4221598)
chr2 (334-395)||(11230239-11230300)
chr2 (350-390)||(35489329-35489369)
chr2 (347-393)||(39115623-39115669)
chr2 (347-396)||(2206424-2206473)
chr2 (350-395)||(10690030-10690075)
chr2 (347-396)||(13417148-13417197)
chr2 (331-395)||(3152422-3152486)
[»] chr1 (12 HSPs)
chr1 (143-477)||(49371153-49371487)
chr1 (134-540)||(26997337-26997742)
chr1 (330-395)||(39431758-39431823)
chr1 (330-395)||(20797132-20797197)
chr1 (331-395)||(35542507-35542571)
chr1 (420-504)||(6052165-6052249)
chr1 (347-395)||(32643360-32643408)
chr1 (331-393)||(17132112-17132174)
chr1 (352-393)||(14342581-14342622)
chr1 (362-411)||(19043627-19043676)
chr1 (436-492)||(48435728-48435784)
chr1 (176-252)||(50816713-50816789)
[»] scaffold0032 (1 HSPs)
scaffold0032 (144-443)||(56937-57236)
[»] scaffold0121 (1 HSPs)
scaffold0121 (134-483)||(32917-33257)
[»] scaffold0472 (1 HSPs)
scaffold0472 (331-395)||(4725-4789)
[»] scaffold0112 (1 HSPs)
scaffold0112 (353-395)||(14269-14311)
[»] scaffold0034 (1 HSPs)
scaffold0034 (420-504)||(104337-104421)
[»] scaffold0007 (1 HSPs)
scaffold0007 (347-394)||(183604-183651)
[»] scaffold0183 (1 HSPs)
scaffold0183 (350-392)||(20465-20507)


Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 44 - 562
Target Start/End: Complemental strand, 10800615 - 10800097
Alignment:
Q  44 actaataaggtatcatctgcaaactgcaaatgagacaccaacacattagcttgcaccccaatagcataaggagtgaacaacccagacgttaccaacgcag 143  Q
    |||| ||| |||||||||||||||||||||||||| |||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  10800615 actagtaaagtatcatctgcaaactgcaaatgagaaaccagcacattagcttgcgcccctatagcatatggagtgaacaacccagacgttaccaacgcag 10800516  T
Q  144 acatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcgg 243  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  10800515 acatcatcacatttaaaccttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcgg 10800416  T
Q  244 acacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatca 343  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  10800415 acacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgctaaacacacggaaaattcatcttaatcataacctcatca 10800316  T
Q  344 atgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcatttg 443  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  10800315 atgtaaccccaatcaacagaatcataagctttttcaaaatccactttaaacatgagtaactctttcttttttacctttgcatcatcgactaattcatttg 10800216  T
Q  444 caatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaatac 543  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  10800215 caatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgattagccaatac 10800116  T
Q  544 ctttgatagaattatgtac 562  Q
    |||||||| |||| |||||    
T  10800115 ctttgataaaattttgtac 10800097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 41664035 - 41663971
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||||||| ||| |||||||||||||||||||| || ||||||||||| ||||| ||||    
T  41664035 cataacctcatcaaggtacccccaatcaacagaatcatacgccttttcaaaatctactttgaaca 41663971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 8301276 - 8301340
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||  || |||||||||||||||||| | || ||||||||||||||||| ||||    
T  8301276 cataacctcatcaagatacccccaatcaacagaatcaaacgccttttcaaaatccactttgaaca 8301340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 17660330 - 17660378
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  17660330 taaccccaatcgacagaatcataggccttttcaaaatccaccttaaaca 17660378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 20492251 - 20492315
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||  || |||||||||||||||||| | || ||||||||||||||||| ||||    
T  20492251 cataacctcatcaagatacccccaatcaacagaatcaaacgccttttcaaaatccactttgaaca 20492315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 393
Target Start/End: Complemental strand, 3758338 - 3758267
Alignment:
Q  322 catcttaatcataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    |||||||  ||| |||||||| | |||||| ||||||| ||||||| ||||||| |||||||||||||||||    
T  3758338 catcttacacatcacctcatccaagtaacctcaatcaatagaatcaaaggctttctcaaaatccactttaaa 3758267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 6902412 - 6902455
Alignment:
Q  350 ccccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  6902412 ccccaatcaacagaatcgtaggctttttcaaaatctactttaaa 6902455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 13878135 - 13878090
Alignment:
Q  350 ccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||||||| ||||| || ||||||||||||||||||||||    
T  13878135 ccccaatcaacagagtcatacgccttttcaaaatccactttaaaca 13878090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 36158642 - 36158690
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  36158642 taaccccaatcaacagagtcataagccttttcaaaatccaccttaaaca 36158690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 475
Target Start/End: Original strand, 8306663 - 8306773
Alignment:
Q  365 tcataggctttttcaaaatccactttaaacatgagtaactctttctttttgac-ctttgcatcatcaactaattcatttgcaatcaaaataccatcaaga 463  Q
    ||||| || ||||||||||| ||||| ||||  | ||| ||||| ||| |||| |||||| |||||||| |  ||||||||||| | ||| |||||||||    
T  8306663 tcataagccttttcaaaatcgactttgaacaataataattcttt-tttctgacgctttgcttcatcaacaacctcatttgcaataagaatgccatcaaga 8306761  T
Q  464 atttgtctaccc 475  Q
    ||||||||||||    
T  8306762 atttgtctaccc 8306773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 43247199 - 43247138
Alignment:
Q  334 aacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||| ||| ||||||||||||||| || || || |  ||||||||||||||||||||||    
T  43247199 aacctcaccaaggtaaccccaatcaacggagtcgtaagtcttttcaaaatccactttaaaca 43247138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 28452759 - 28452711
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||| | ||||||||||||||| ||||| || ||||||||||    
T  28452759 taaccccaatctatagaatcataggctttctcaaagtcgactttaaaca 28452711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 44 - 562
Target Start/End: Original strand, 47550111 - 47550629
Alignment:
Q  44 actaataaggtatcatctgcaaactgcaaatgagacaccaacacattagcttgcaccccaatagcataaggagtgaacaacccagacgttaccaacgcag 143  Q
    |||| ||| ||||||||||| |||||||| ||||| |||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||    
T  47550111 actagtaaagtatcatctgcgaactgcaagtgagaaaccagcacattagcttgcgcccctatagcatatggagtgaacaacccagacgttaccaatgcag 47550210  T
Q  144 acatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcgg 243  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  47550211 acatcatcacatttaaatcttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcgg 47550310  T
Q  244 acacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatca 343  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  47550311 acacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgcgaaacacacggaaaattcatcttaatcataacctcatca 47550410  T
Q  344 atgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcatttg 443  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47550411 atgtaaccccaatcaacagaatcataagctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcgactaattcatttg 47550510  T
Q  444 caatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaatac 543  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  47550511 caatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgattagccaatac 47550610  T
Q  544 ctttgatagaattatgtac 562  Q
    |||||||| |||| |||||    
T  47550611 ctttgataaaattttgtac 47550629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 44 - 562
Target Start/End: Original strand, 47554576 - 47555094
Alignment:
Q  44 actaataaggtatcatctgcaaactgcaaatgagacaccaacacattagcttgcaccccaatagcataaggagtgaacaacccagacgttaccaacgcag 143  Q
    |||| ||| ||||||||||| |||||||| ||||| |||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||    
T  47554576 actagtaaagtatcatctgcgaactgcaagtgagaaaccagcacattagcttgcgcccctatagcatatggagtgaacaacccagacgttaccaatgcag 47554675  T
Q  144 acatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcgg 243  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  47554676 acatcatcacatttaaatcttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcgg 47554775  T
Q  244 acacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatca 343  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  47554776 acacccattaactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgcgaaacacacggaaaattcatcttaatcataacctcatca 47554875  T
Q  344 atgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcatttg 443  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47554876 atgtaaccccaatcaacagaatcataagctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcgactaattcatttg 47554975  T
Q  444 caatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaatac 543  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  47554976 caatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgattagccaatac 47555075  T
Q  544 ctttgatagaattatgtac 562  Q
    |||||||| |||| |||||    
T  47555076 ctttgataaaattttgtac 47555094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 53 - 562
Target Start/End: Complemental strand, 22864673 - 22864164
Alignment:
Q  53 gtatcatctgcaaactgcaaatgagacaccaacacattagcttgcaccccaatagcataaggagtgaacaacccagacgttaccaacgcagacatcatca 152  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  22864673 gtatcatctgcaaactgcaagtgagaaaccatcacattagcttgcgccccaatagcatatggagtgaacaacccagtcgttaccaacgcagacatcatca 22864574  T
Q  153 catttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcggacacccatt 252  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||    
T  22864573 catttaaaccttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcaagattaaactcatcagtcgggcacccatt 22864474  T
Q  253 aactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatcaatgtaaccc 352  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  22864473 aactaacacagatgtcgtcgccgttgtaatacattccataatccaagaccgccaaacacacggaaaattcatcttaatcataacctcatcaatgtagccc 22864374  T
Q  353 caatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcatttgcaatcaaaa 452  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  22864373 caatcatcagaatcataagctttttcaaaatccactttaaacatgagtaactttttctttttgacctttgcatcatcgactaattcatttgcaatcaaaa 22864274  T
Q  453 taccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaatacctttgatag 552  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||     
T  22864273 taccatcaagaatttgtctacccttaataaacgcagactgagaatcagataccacattacctatcacccttctcaaacgattagccaatacctttgataa 22864174  T
Q  553 aattatgtac 562  Q
    |||| |||||    
T  22864173 aattttgtac 22864164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 161 - 540
Target Start/End: Complemental strand, 20704311 - 20703932
Alignment:
Q  161 ccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcggacacccattaactaaca 260  Q
    ||||| |||||||| | ||||||||| || ||||| ||||||||||| |||||||||||||||| || ||||||||| ||||| ||||||||||||| ||    
T  20704311 ccttctgctgctaacaaaaacaaaaatggggaaagaggatccccttgccggagacctctctcgaaatgaaactcatccgtcgggcacccattaactagca 20704212  T
Q  261 cagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatcaatgtaaccccaatcaac 360  Q
    | || || || |||||||||||||||||||| ||||||   ||||| || |  ||||| ||||| || | ||||||||| || |  ||||||||||| ||    
T  20704211 cggaagcggttgccgttgtaacacattccattatccaaactcgccacacccttggaaaattcattttgaccataacctcctctagataaccccaatcgac 20704112  T
Q  361 agaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgac-ctttgcatcatcaactaattcatttgcaatcaaaataccatc 459  Q
     |||||||||||||| ||||||||||| |||||||| ||||| |||||| ||||||| ||| |||||||||||||| ||||| ||||||||||| |||||    
T  20704111 tgaatcataggctttctcaaaatccaccttaaacataagtaagtctttc-ttttgacacttcgcatcatcaactaactcattagcaatcaaaatcccatc 20704013  T
Q  460 aagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaa 540  Q
    |||||||||||||||||| ||||| |  ||||||||| ||||||||||||| || | |||||||||||||| ||| |||||    
T  20704012 aagaatttgtctaccctttataaaagcggactgagaaccagacaccacatttcccaccacccttctcaatctattcgccaa 20703932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 161 - 540
Target Start/End: Complemental strand, 20872355 - 20871976
Alignment:
Q  161 ccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcggacacccattaactaaca 260  Q
    ||||| |||||||| | ||||||||| || ||||| ||||||||||| |||||||||||||||| || ||||||||| ||||| ||||||||||||| ||    
T  20872355 ccttctgctgctaacaaaaacaaaaatggggaaagaggatccccttgccggagacctctctcgaaatgaaactcatccgtcgggcacccattaactagca 20872256  T
Q  261 cagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatcaatgtaaccccaatcaac 360  Q
    | || || || |||||||||||||||||||| ||||||   ||||| || |  ||||| ||||| || | ||||||||| || |  ||||||||||| ||    
T  20872255 cggaagcggttgccgttgtaacacattccattatccaaactcgccacacccttggaaaattcattttgaccataacctcctctagataaccccaatcgac 20872156  T
Q  361 agaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgac-ctttgcatcatcaactaattcatttgcaatcaaaataccatc 459  Q
     |||||||||||||| ||||||||||| |||||||| ||||| |||||| ||||||| ||| |||||||||||||| ||||| ||||||||||| |||||    
T  20872155 tgaatcataggctttctcaaaatccaccttaaacataagtaagtctttc-ttttgacacttcgcatcatcaactaactcattagcaatcaaaatcccatc 20872057  T
Q  460 aagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaa 540  Q
    |||||||||||||||||| ||||| |  ||||||||| ||||||||||||| || | |||||||||||||| ||| |||||    
T  20872056 aagaatttgtctaccctttataaaagcggactgagaaccagacaccacatttcccaccacccttctcaatctattcgccaa 20871976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 143 - 556
Target Start/End: Original strand, 588170 - 588583
Alignment:
Q  143 gacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcg 242  Q
    |||||||||||||| |  |||||||| ||||| | |||||||||||| ||||| ||||||||||| || || ||||| || | || ||||||||||||||    
T  588170 gacatcatcacattaaggccttcagcagctaacaaaaacaaaaacggggaaagaggatccccttggcgaagtcctctttcaaaatgaaactcatcagtcg 588269  T
Q  243 gacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatc 342  Q
    ||||||||||||||||||| ||||  || |||||||| ||||| |||||||||||||| ||||| | || |||||| ||||| |||  ||| ||||||||    
T  588270 gacacccattaactaacactgatgttgtagccgttgtgacacactccataatccaagaacgccatagacgcggaaaattcattttagccatcacctcatc 588369  T
Q  343 aatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcattt 442  Q
     |  || | |||||| || |||||||| || || ||||||||||| |||||||| ||||||||||| || ||   ||| |||||||| || |||||||||    
T  588370 taaatacctccaatccaccgaatcatacgccttctcaaaatccaccttaaacataagtaactctttattattacgcttcgcatcatctaccaattcattt 588469  T
Q  443 gcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaata 542  Q
    || |||| ||||||||| | ||| ||||| ||||| ||||| |  ||||||||| || |||||||| | |||| |||| ||||||||||||| ||||| |    
T  588470 gctatcagaataccatccaaaatctgtcttccctttataaaagcggactgagaagcaaacaccacactcccaaccaccattctcaatcgattggccaaaa 588569  T
Q  543 cctttgatagaatt 556  Q
    | ||||||| ||||    
T  588570 cttttgataaaatt 588583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 139 - 540
Target Start/End: Original strand, 12122968 - 12123369
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    ||||| |||||||||||| |  |||||||| ||||| ||||||| |||||| ||||| ||||||||||||||||| || || || | || ||||||||||    
T  12122968 cgcagtcatcatcacattaagtccttcagcagctaacagaaacagaaacggggaaagaggatccccttgacggagtccactttcaaaatgaaactcatca 12123067  T
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacct 338  Q
    | |||||| ||||| |||| ||| || || || ||||||||||| || |||||||||||||| ||||| | |  |||||| | ||| |||  ||| ||||    
T  12123068 gccggacaaccattcactagcacggaagctgtagccgttgtaacgcactccataatccaagaacgccacatatgcggaaaatacattttacccatcacct 12123167  T
Q  339 catcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattc 438  Q
    |||| | ||| | |||||| || ||||||||  | ||||||||||||||||||||||| |||| |||||| |  ||   ||||||||||||||| |||||    
T  12123168 catctaagtacctccaatccaccgaatcatacaccttttcaaaatccactttaaacataagtagctctttatcattacgctttgcatcatcaaccaattc 12123267  T
Q  439 atttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagcc 538  Q
     ||||| |||| ||||||||| | ||| ||||||||||||| ||| | |||||||||| |||| || ||| | ||||||||| ||||||| ||||| |||    
T  12123268 ctttgctatcagaataccatccaaaatctgtctacccttaacaaaagcagactgagaagcagaaactacacttccaatcacctttctcaaccgattggcc 12123367  T
Q  539 aa 540  Q
    ||    
T  12123368 aa 12123369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 139 - 540
Target Start/End: Complemental strand, 37074430 - 37074029
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    |||||||||||||||||  | ||||||||| ||||| ||||||| ||| || ||||| |||||||||||||| || ||||| || | || |||||||||     
T  37074430 cgcagacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgtagtcctctttcaaaatgaaactcatcg 37074331  T
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacct 338  Q
    ||||  || ||||| |||||||| || || || || ||||||||||| |||||||||||| |||||||   |  |||||| ||||| || ||||| ||||    
T  37074330 gtcgagcaaccattcactaacactgaagctgtagcagttgtaacacactccataatccaacaccgccacttagtcggaaaattcattttgatcatcacct 37074231  T
Q  339 catcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattc 438  Q
    |||| | |||||||||||| || || ||||| || ||||||||||||||||||||||| |||| |||||| |  ||   ||| |||||||| || | |||    
T  37074230 catctaagtaaccccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctacaacttc 37074131  T
Q  439 atttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagcc 538  Q
    ||| || |||| ||||||||| | ||| |||||||| || ||||| | |||||||||| ||||||||||| | |||| |||| ||| ||| |||||||||    
T  37074130 attagctatcagaataccatccaaaatctgtctaccttttataaaagcagactgagaagcagacaccacacttccaaccaccattcgcaaacgattagcc 37074031  T
Q  539 aa 540  Q
    ||    
T  37074030 aa 37074029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 366 - 510
Target Start/End: Original strand, 27278626 - 27278769
Alignment:
Q  366 cataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcatttgcaatcaaaataccatcaagaat 465  Q
    |||| ||||| |||||||| || |||||||| ||||| | |||||||||   ||| ||||||||||||||||||||||| |||||||   |||| |||||    
T  27278626 catatgctttctcaaaatc-accttaaacataagtaaatatttctttttacacttcgcatcatcaactaattcatttgctatcaaaacctcatccagaat 27278724  T
Q  466 ttgtctacccttaataaacgtagactgagaatcagacaccacatt 510  Q
    | |||||||||| ||||| | | |||||||| ||||||| |||||    
T  27278725 tcgtctacccttgataaaggcatactgagaagcagacacaacatt 27278769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 17722108 - 17722172
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||| |||||||  || |||||||||||||||||||| || ||||||||||||||||||||||    
T  17722108 cataacttcatcaagatacccccaatcaacagaatcatacgccttttcaaaatccactttaaaca 17722172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 29969447 - 29969511
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||||||| ||| |||||||||||||||||| | || ||||||||||||||||| ||||    
T  29969447 cataacctcatcaaggtacccccaatcaacagaatcaaacgccttttcaaaatccactttgaaca 29969511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 8772337 - 8772379
Alignment:
Q  351 cccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  8772337 cccagtcaacagaatcataggctttttcaaaatccactttaaa 8772379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 45460785 - 45460849
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||  || ||||||||||| || ||||| |||||||||||||| ||||||||||    
T  45460785 cataacctcatcaagatatccccaatcaaccgagtcatacgctttttcaaaatctactttaaaca 45460849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 18768896 - 18768938
Alignment:
Q  351 cccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  18768896 cccagtcaacagaatcatagactttttcaaaatccactttaaa 18768938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 504
Target Start/End: Complemental strand, 4936706 - 4936622
Alignment:
Q  420 ttgcatcatcaactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacac 504  Q
    |||| |||||||| |  ||||| |||||||| ||||||||||||||||||||| |||| | ||| | ||||||||  ||||||||    
T  4936706 ttgcctcatcaaccacctcattcgcaatcaagataccatcaagaatttgtctatccttcacaaaagcagactgagtttcagacac 4936622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 24820494 - 24820562
Alignment:
Q  145 catcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggag 213  Q
    |||||||||||| |  |||||||| ||||  ||||||| |||||| ||||| |||||||||||||||||    
T  24820494 catcatcacattaaggccttcagccgctagcagaaacagaaacggggaaagaggatccccttgacggag 24820562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 34233190 - 34233239
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaacat 396  Q
    |||||||| || ||||| ||||||||||||||||||||||| || |||||    
T  34233190 taaccccagtcgacagagtcataggctttttcaaaatccaccttgaacat 34233239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 37938989 - 37938952
Alignment:
Q  356 tcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  37938989 tcaacaaaatcataagctttttcaaaatccactttaaa 37938952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 48779403 - 48779500
Alignment:
Q  158 aaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcggacacccattaac 255  Q
    |||||||| ||||| || | ||| | ||| || ||||| || ||||||||||| || || ||||| | ||||||||||||||||||||| || |||||    
T  48779403 aaaccttcggctgccaataaaaatagaaatggcgaaagagggtccccttgacgaaggcccctctcaacattaaactcatcagtcggacatccgttaac 48779500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 13637266 - 13637314
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||| ||||||||| |||||||||| |||  ||||||||||||||||||    
T  13637266 taacaccaatcaactgaatcatagggtttcccaaaatccactttaaaca 13637314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 34207803 - 34207867
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||| |||||||  |||  ||||||||| || ||| | |||||||||||||||||||||||||    
T  34207803 cataacatcatcaagataattccaatcaaccgagtcaaacgctttttcaaaatccactttaaaca 34207867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 53 - 562
Target Start/End: Original strand, 29326494 - 29327003
Alignment:
Q  53 gtatcatctgcaaactgcaaatgagacaccaacacattagcttgcaccccaatagcataaggagtgaacaacccagacgttaccaacgcagacatcatca 152  Q
    ||||||||| |||||||||| ||||| |||| ||||||||||||  ||||||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  29326494 gtatcatctacaaactgcaagtgagaaaccagcacattagcttgtgccccaatagcatatggagtgaacaaccaagtcgttaccaacgcagacatcatca 29326593  T
Q  153 catttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcggacacccatt 252  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  29326594 catttgaaccttcagctgctaaaaggaacaaaaacggagaaagcggatccccttgacggagacccctttcgagattaaactcatcagtcggacacccatt 29326693  T
Q  253 aactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatcaatgtaaccc 352  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  29326694 aactaacacaaatgccgtcgccgtagtaatacattccataatccaagaccgccaaacacacggaaaattcatcttaatcataacctcatcaatgtagccc 29326793  T
Q  353 caatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcatttgcaatcaaaa 452  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  29326794 caatcaacagaatcataagctttttcaaaatccactttaaacatgagtaactctttcttttttacctttgcatcatcgactaattcatttgcaatcaaaa 29326893  T
Q  453 taccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaatacctttgatag 552  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||     
T  29326894 taccatcaagaatttgtctacccttaataaacgcagactgagaatcagacaccacattacctatcacccttctcaaacgattagccaatacctttgataa 29326993  T
Q  553 aattatgtac 562  Q
    |||| |||||    
T  29326994 aattttgtac 29327003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 11267411 - 11267568
Alignment:
Q  143 gacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcg 242  Q
    |||||||| ||||| | |||||| || ||||| ||||||||||| || || || || |||||||| ||||| |||||||| | || ||||||||||||||    
T  11267411 gacatcataacattaagaccttccgcagctaacagaaacaaaaatggggagagagggtccccttggcggagtcctctctcaaaatgaaactcatcagtcg 11267510  T
Q  243 gacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaaga 300  Q
    |||| ||||| |||| ||| |||| ||| || ||||||||||||||||||||||||||    
T  11267511 gacaaccatttactagcactgatgtcgtagctgttgtaacacattccataatccaaga 11267568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 6677434 - 6677321
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    |||||||||||||||||  | ||||||||| ||||| ||||||| ||| || ||||| |||||||||||||| || ||||| || | || |||||||||     
T  6677434 cgcagacatcatcacatcaagaccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgtagtcctctttcaaaatgaaactcatcg 6677335  T
Q  239 gtcggacacccatt 252  Q
    ||||| || |||||    
T  6677334 gtcgggcaaccatt 6677321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 23239854 - 23239918
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||||||| ||| |||||||||||||||||||| || ||| ||||||||||||| ||||    
T  23239854 cataacctcatcaaggtacccccaatcaacagaatcatacgcctttgcaaaatccactttgaaca 23239918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 36257264 - 36257313
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaacat 396  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  36257264 taaccccaatcaacagaatcatacgctttctcaaaatccaccttaaacat 36257313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 1822338 - 1822386
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||  ||||||| || ||||||||||||||||||||||    
T  1822338 taaccccaatcaactaaatcataagcattttcaaaatccactttaaaca 1822386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 6050729 - 6050777
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||| ||||| |||||||| |||||||||||||| |||||||    
T  6050729 taaccccaatcgacagagtcataggccttttcaaaatccaccttaaaca 6050777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 504
Target Start/End: Original strand, 42515282 - 42515366
Alignment:
Q  420 ttgcatcatcaactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacac 504  Q
    |||| |||||||| |  ||||| |||||||| ||||||||||||||||||||| |||| | ||| | ||||||||  ||||||||    
T  42515282 ttgcctcatcaaccacctcattcgcaatcaagataccatcaagaatttgtctatccttcacaaaagcagactgagtttcagacac 42515366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 19509611 - 19509670
Alignment:
Q  334 aacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    |||||||||||  ||||||||||| ||  ||||||| || ||||||||||||||||||||    
T  19509611 aacctcatcaagataaccccaatcgaccaaatcatacgccttttcaaaatccactttaaa 19509670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 22561452 - 22561406
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    |||| |||||||| ||||||||||||||| ||||||||||| |||||    
T  22561452 taacgccaatcaatagaatcataggctttctcaaaatccaccttaaa 22561406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 38358960 - 38359002
Alignment:
Q  351 cccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||    
T  38358960 cccaatcaatagaatcataggctttttcgaaatccactataaa 38359002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 395
Target Start/End: Complemental strand, 25856115 - 25856042
Alignment:
Q  322 catcttaatcataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||| ||| ||||||||| ||||  || ||||||||||| || ||||| || || |||||||||||||||||||    
T  25856115 catcctaaccataacctcctcaagatacccccaatcaactgagtcatacgccttctcaaaatccactttaaaca 25856042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 520
Target Start/End: Complemental strand, 30508570 - 30508501
Alignment:
Q  451 aataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacc 520  Q
    ||||||||||||||| ||||||  ||||||||| | ||||||||  ||||| | |||| |||||||||||    
T  30508570 aataccatcaagaatctgtctattcttaataaaagcagactgagtttcagaaatcacactaccaatcacc 30508501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 520
Target Start/End: Complemental strand, 30548913 - 30548844
Alignment:
Q  451 aataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacc 520  Q
    ||||||||||||||| ||||||  ||||||||| | ||||||||  ||||| | |||| |||||||||||    
T  30548913 aataccatcaagaatctgtctattcttaataaaagcagactgagtttcagaaatcacactaccaatcacc 30548844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 6999654 - 6999606
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||| ||  |||||||||| |||||||||||||| |||||||    
T  6999654 taaccccaatcgacttaatcataggccttttcaaaatccaccttaaaca 6999606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 27164762 - 27164698
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||||| | ||| |||||||||||||| || || || |||||||| |||||||| ||||    
T  27164762 cataacctcatctaggtacccccaatcaacagagtcgtaagccttttcaaagtccactttgaaca 27164698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 44 - 562
Target Start/End: Complemental strand, 5390452 - 5389934
Alignment:
Q  44 actaataaggtatcatctgcaaactgcaaatgagacaccaacacattagcttgcaccccaatagcataaggagtgaacaacccagacgttaccaacgcag 143  Q
    |||||||| |||||||||||||||||||| |||||||||| |||||||||| || |||| | ||||||||||||||||||||||   | |||||| ||||    
T  5390452 actaataaagtatcatctgcaaactgcaagtgagacaccagcacattagctggctccccgacagcataaggagtgaacaacccactagataccaatgcag 5390353  T
Q  144 acatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcgg 243  Q
    |||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| || || || ||  ||||||||| ||||||    
T  5390352 acatcatcacatttaaaccttctgcagctaataggaacaaaaacggagaaagcggatccccttgacggaggcccctttcaaggataaactcattagtcgg 5390253  T
Q  244 acacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatca 343  Q
     |||||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||  ||| ||||||||||||||||||||||||    
T  5390252 gcacccattaactaacacagatgccgttgccgttgttatacactccataatccaagaccgctaaacacacaaaaaattcatcttaatcataacctcatca 5390153  T
Q  344 atgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcatttg 443  Q
    || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||||| ||||| |||||||| |||||||||||||    
T  5390152 atataaccccaatcaacagaatcataagctttttcaaaatccaccttaaacatgagtaactatttttttttaaccttagcatcatcgactaattcatttg 5390053  T
Q  444 caatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaatac 543  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||    
T  5390052 caatcaaaataccatcaagaatttgtctacccttaataaacgcagactgagtatcagacaccacattacctatcacccttctcaaacgattagccaatac 5389953  T
Q  544 ctttgatagaattatgtac 562  Q
    |||||||| |||| |||||    
T  5389952 ctttgataaaattttgtac 5389934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 139 - 540
Target Start/End: Complemental strand, 18294235 - 18293834
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    ||||| |||| ||||||| |  |||||||| ||||| | ||| | ||| || ||||| |||||||||||||| || ||||| || | || ||||||||||    
T  18294235 cgcagtcatcgtcacattaaggccttcagcagctaacaaaaatagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaataaaactcatca 18294136  T
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacct 338  Q
    || ||||| ||||| |||| |||||| || || ||||||||||| || |||||||||||||| ||||| | || |||||| | ||| |||  ||| ||||    
T  18294135 gttggacaaccattcactagcacagaagctgtagccgttgtaacgcactccataatccaagaacgccacatacgcggaaaatacattttacccatcacct 18294036  T
Q  339 catcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattc 438  Q
    || | | ||| | |||||| || |||||||| || ||||||||||||||||||||||| |||| |||||| |  ||   ||||||||||||||| |||||    
T  18294035 cacctaagtacctccaatccaccgaatcatacgccttttcaaaatccactttaaacataagtagctctttatcattacgctttgcatcatcaaccaattc 18293936  T
Q  439 atttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagcc 538  Q
     ||||| |||| ||||||||| | ||| ||||||||||||| ||| | |||||||||| ||||||||||| | ||||||||| ||||||| ||||| |||    
T  18293935 gtttgctatcagaataccatccaaaatctgtctacccttaacaaaagcagactgagaagcagacaccacacttccaatcacctttctcaaccgattggcc 18293836  T
Q  539 aa 540  Q
    ||    
T  18293835 aa 18293834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 139 - 540
Target Start/End: Original strand, 2895585 - 2895987
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    ||||||||||||||| || |  |||||||| ||||  ||||||| ||||||||| || ||||||||||||||||| ||||| || | || ||||||||||    
T  2895585 cgcagacatcatcacgttaaggccttcagccgctagcagaaacagaaacggagatagaggatccccttgacggagtcctctttcaaaatgaaactcatca 2895684  T
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacct 338  Q
    ||||| || ||||| ||||  || || || || || |||||||| || |||||||||||||| | ||| | || ||||||   ||| |||  ||| || |    
T  2895685 gtcgggcaaccattcactagtactgaagctgtagcagttgtaacgcactccataatccaagagcaccacagacgcggaaataacattttatccatcactt 2895784  T
Q  339 catcaatgtaaccccaatcaacagaatcata-ggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaatt 437  Q
    |||| | ||| | |||||| ||  |||| || | |||||||||| |||||||| ||||| |||| |||||| |  ||    ||||||||||| || ||||    
T  2895785 catctaagtacctccaatccaccaaatcgtacgcctttttcaaagtccactttgaacataagtagctctttatcattatgttttgcatcatctaccaatt 2895884  T
Q  438 catttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagc 537  Q
    ||||||| |||| ||||||||| | ||| ||||||||||||| ||| | | |||||||| | ||||||||| |||||| |||| ||||||| ||||| ||    
T  2895885 catttgctatcagaataccatccaaaatctgtctacccttaacaaaagcacactgagaagccgacaccacactaccaaccacctttctcaaccgattggc 2895984  T
Q  538 caa 540  Q
    |||    
T  2895985 caa 2895987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 2555077 - 2555141
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||||||| ||| |||||||||||| |||||||  ||||||||||||||||||| ||||    
T  2555077 cataacctcatcaaggtacccccaatcaacataatcatacactttttcaaaatccactttgaaca 2555141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 11059513 - 11059465
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  11059513 taaccccaatcgacagaatcataggccttttcaaaatccaccttaaaca 11059465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 12150325 - 12150236
Alignment:
Q  152 acatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtc 241  Q
    ||||||||||||||| | ||||| ||||| | |||  ||||||| ||||| |||||||| || |||||||| | | ||||||||||||||    
T  12150325 acatttaaaccttcaacagctaatagaaaaagaaaacgagaaagaggatcaccttgacgaagccctctctccaaaataaactcatcagtc 12150236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 13087019 - 13087080
Alignment:
Q  334 aacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||| |||| |||||||||| ||||| || || ||||||||||| ||||||||||    
T  13087019 aacctcatcaaggtaatcccaatcaacggaatcgtaagccttttcaaaatctactttaaaca 13087080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 21550344 - 21550381
Alignment:
Q  356 tcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    |||||||||||||| |||||||||||||||||||||||    
T  21550344 tcaacagaatcatatgctttttcaaaatccactttaaa 21550381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 1307334 - 1307270
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||| |||||||  ||| |||||||||| || ||| | |||||||||||||||||||||||||    
T  1307334 cataacatcatcaagataatcccaatcaaccgagtcaaacgctttttcaaaatccactttaaaca 1307270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 471
Target Start/End: Complemental strand, 17712169 - 17712123
Alignment:
Q  425 tcatcaactaattcatttgcaatcaaaataccatcaagaatttgtct 471  Q
    |||||||| | |||||||||||| | |||||||||||||||||||||    
T  17712169 tcatcaacaacttcatttgcaataagaataccatcaagaatttgtct 17712123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 17605001 - 17604937
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||| ||||  || ||||||||||| || |||||  | ||||||||||||||||||||||    
T  17605001 cataacctcctcaagatacccccaatcaactgagtcatacaccttttcaaaatccactttaaaca 17604937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 44 - 428
Target Start/End: Original strand, 16665265 - 16665650
Alignment:
Q  44 actaataaggtatcatctgcaaactgcaaatgagacaccaacacattagcttgcaccccaatagcataaggagtgaacaacccagacgttaccaacgcag 143  Q
    |||| ||| |||||||||||||||||||| ||||| |||| ||||||||||||| |||| | |||||| |||||||||||||||  ||||||||||||||    
T  16665265 actagtaatgtatcatctgcaaactgcaagtgagaaaccagcacattagcttgcgccccgacagcatatggagtgaacaacccattcgttaccaacgcag 16665364  T
Q  144 acatcatcacatttaaaccttcagctgctaaaagaaac-aaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcg 242  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||    
T  16665365 acatcatcacatttaaaccttctgctgctaaaaggaaccaaaaatggagaaagcggatccccttgacggagacccctttcaagattaaactcatcagtcg 16665464  T
Q  243 gacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatc 342  Q
    | |||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  16665465 ggcacccattaactaacacagatgccatcgccattgtaatacactccataatccaagaccgccaaacacacggaaaattcatcttaatcataacctcgtc 16665564  T
Q  343 aatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcat 428  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16665565 aatgtagccccaatcaacagaatcataagctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcat 16665650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 56 - 540
Target Start/End: Original strand, 10755362 - 10755846
Alignment:
Q  56 tcatctgcaaactgcaaatgagacaccaacacattagcttgcaccccaatagcataaggagtgaacaacccagacgttaccaacgcagacatcatcacat 155  Q
    ||||||||||| ||||| ||||| |||||||||||  | ||| |||| | | |||| ||||| |||| ||||  ||| ||||| || | |||||||||||    
T  10755362 tcatctgcaaattgcaagtgagataccaacacattgtcctgcgcccctacaccatatggagtaaacatcccattcgtaaccaatgctgtcatcatcacat 10755461  T
Q  156 ttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcggacacccattaac 255  Q
    | | |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || || ||| |||||||||| |||||||||||||||||    
T  10755462 tgagaccttcagctgctaaaaggaacaaaaacggtgaaagcggatccccttgccggagacccctttcaagagtaaactcatctgtcggacacccattaac 10755561  T
Q  256 taacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatcaatgtaaccccaa 355  Q
    |||||| |||| ||| |||||||||| ||| ||||||||||| ||||||||||||| | |||| |||||||||  |||||| ||||||||||| ||||||    
T  10755562 taacactgatgtcgttgccgttgtaatacactccataatccaggaccgccaaacactcagaaaattcatcttacacataacttcatcaatgtacccccaa 10755661  T
Q  356 tcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcatttgcaatcaaaatac 455  Q
    |||||| ||||||| ||||| ||||||||||| |||||||  ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  10755662 tcaacaaaatcataagctttctcaaaatccaccttaaacaaaagtaaatctttcttcttgacctttgcatcatcaactaattcatttgcaatcaagatac 10755761  T
Q  456 catcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaa 540  Q
    |||| ||||||||||||||||||||||| |  ||||| |||||||||||||| ||||||| |||| |||| |  |||||||||||    
T  10755762 catcgagaatttgtctacccttaataaaagcggactgtgaatcagacaccaccttaccaaccacctttctaagccgattagccaa 10755846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 139 - 556
Target Start/End: Complemental strand, 17152650 - 17152233
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    |||||||||||||||||| |  |||||||| ||||| | ||||| ||| || ||||| |||||||||||| |||| ||||| || | || |||||||||     
T  17152650 cgcagacatcatcacattaaggccttcagcagctaatacaaacagaaaaggggaaaggggatccccttgaaggagtcctctttcaaaatgaaactcatcg 17152551  T
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacct 338  Q
    |||||||| ||||| |||||||| ||||| || || ||||||||||| |||||||||||||| |||||   |  |||||| ||||| |||||||  ||||    
T  17152550 gtcggacaaccattcactaacactgatgctgtagcagttgtaacacactccataatccaagaacgccacttaggcggaaaattcattttaatcaacacct 17152451  T
Q  339 catcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattc 438  Q
    |||| | ||| |||||||| || |||||||| || ||||||||||||||||||||||| ||||||||||| |  ||   ||| |||||||| ||||||||    
T  17152450 catctaagtatccccaatccaccgaatcatacgccttttcaaaatccactttaaacataagtaactctttatcattacgcttcgcatcatctactaattc 17152351  T
Q  439 atttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagcc 538  Q
    |||||| |||| ||||||||| | |||||||||||| || ||||| | |||||||||| ||||||||||| | || | |||| |||||||| ||||||||    
T  17152350 atttgctatcagaataccatccaaaatttgtctaccttttataaaagcagactgagaagcagacaccacacttcctaccaccattctcaattgattagcc 17152251  T
Q  539 aatacctttgatagaatt 556  Q
    || || ||||||| ||||    
T  17152250 aagacttttgataaaatt 17152233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 139 - 540
Target Start/End: Original strand, 3516066 - 3516467
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    ||||| |||||||||||| |  |||||||| ||||| ||||||| |||||| ||||| |||||||||||||| || ||||| || | || ||||||||||    
T  3516066 cgcagtcatcatcacattaaggccttcagcagctaacagaaacagaaacggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatca 3516165  T
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacct 338  Q
    |||||||| ||||| |||| |||||| || || ||||||||||| || |||||||||||||| |||||   | |||||||   ||| |||  ||  ||||    
T  3516166 gtcggacagccattcactagcacagaagctgtagccgttgtaacgcactccataatccaagaacgccacttatacggaaaacacattttacccaacacct 3516265  T
Q  339 catcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattc 438  Q
    |||| | ||| | ||| || || |||||||| || ||||||||||||||||||||||| ||||||||||| |  ||   ||||||||||||||| |||||    
T  3516266 catctaagtacctccagtccaccgaatcatatgccttttcaaaatccactttaaacataagtaactctttatcattacgctttgcatcatcaaccaattc 3516365  T
Q  439 atttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagcc 538  Q
     ||||| |||| ||||||||| | ||| ||| ||||||||||||| | |||||||||| ||||||||||| | ||||||||| ||||||||||||| |||    
T  3516366 gtttgctatcagaataccatccaaaatatgtttacccttaataaaagcagactgagaagcagacaccacacttccaatcacctttctcaatcgattggcc 3516465  T
Q  539 aa 540  Q
    ||    
T  3516466 aa 3516467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 229 - 540
Target Start/End: Complemental strand, 9827466 - 9827155
Alignment:
Q  229 aaactcatcagtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatctta 328  Q
    ||||||||| ||| |||| ||||| |||||||| ||||| || || ||||||||||| ||||||||||||   |||||   |   ||||| ||||| |||    
T  9827466 aaactcatcggtcagacaaccattcactaacactgatgctgtagcagttgtaacacactccataatccaaccacgccacttagttggaaaattcatttta 9827367  T
Q  329 atcataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcat 428  Q
    || || |||||||| | |||||||||||| || || ||||| || ||||||||||||||||||||||| ||||||||||| |  ||   ||| |||||||    
T  9827366 attatcacctcatctaagtaaccccaatccaccgagtcatacgccttttcaaaatccactttaaacataagtaactctttatcattacgcttcgcatcat 9827267  T
Q  429 caactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaa 528  Q
    | |||||||||||||| |||| ||||||||| | ||| |||||||| || ||||| | |||||||||| ||||||||||| | |||| |||| |||||||    
T  9827266 ctactaattcatttgctatcagaataccatccaaaatctgtctaccttttataaaagcagactgagaagcagacaccacacttccaaccaccattctcaa 9827167  T
Q  529 tcgattagccaa 540  Q
      ||||||||||    
T  9827166 atgattagccaa 9827155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 143 - 384
Target Start/End: Original strand, 8596643 - 8596884
Alignment:
Q  143 gacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcg 242  Q
    |||||||| ||||| | |||||| |||||||| |  ||||||||||| ||||| |||||||||||||| || |||||||| | ||  |||||||| ||||    
T  8596643 gacatcattacattaagaccttctgctgctaacaagaacaaaaacggggaaagaggatccccttgacgaaggcctctctcaaaatggaactcatctgtcg 8596742  T
Q  243 gacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatc 342  Q
    |||| ||||||||||| || |||| ||| |||||||||||||| |||||||||||||| ||||| |    |||||| ||||| |||||||| ||||||||    
T  8596743 gacaaccattaactaaaactgatgtcgtagccgttgtaacacactccataatccaagagcgccacaattgcggaaaattcattttaatcatcacctcatc 8596842  T
Q  343 aatgtaaccccaatcaacagaatcataggctttttcaaaatc 384  Q
     |  |||| ||||||||| |||||||| ||||||||||||||    
T  8596843 taaataactccaatcaacggaatcatatgctttttcaaaatc 8596884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 113 - 300
Target Start/End: Original strand, 30737877 - 30738064
Alignment:
Q  113 ggagtgaacaacccagacgttaccaacgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacgga 212  Q
    ||||| |||||||||  ||| |||| ||| |||||||||||||| |  ||||| || ||||| | |||||||||||||||||| ||||||| | ||||||    
T  30737877 ggagtaaacaacccactcgtcaccatcgctgacatcatcacattaaggccttcggcagctaacaaaaacaaaaacggagaaagaggatcccttggacgga 30737976  T
Q  213 gacctctctcgagattaaactcatcagtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaaga 300  Q
    |||||||||| |  |||||||||||| ||||||| ||||||||||||||    | ||| |||||||||||||| ||||||||||||||    
T  30737977 gacctctctcaaagttaaactcatcaatcggacatccattaactaacactaccgtcgttgccgttgtaacacactccataatccaaga 30738064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 239 - 556
Target Start/End: Original strand, 23823194 - 23823511
Alignment:
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacct 338  Q
    |||||||| ||||| ||||| ||||||| ||| |||||||| ||||| |||||||||||||| ||||| |    |||||| ||||| |||||||| ||||    
T  23823194 gtcggacaaccatttactaaaacagatgtcgttgccgttgtgacacactccataatccaagagcgccacaggtgcggaaaattcattttaatcatcacct 23823293  T
Q  339 catcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattc 438  Q
    | || | ||| | |||||| || || ||||| ||||||||||| |||||||||||||| ||||||||||| || ||   ||| |||||||| || |||||    
T  23823294 cttccaagtacctccaatccacggagtcataagctttttcaaagtccactttaaacataagtaactctttattattacacttcgcatcatctaccaattc 23823393  T
Q  439 atttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagcc 538  Q
    ||| || || |  || ||||| | ||| ||||||||||| ||||| |  || |||||| ||||||| ||| | || | |||| ||||||| ||||| |||    
T  23823394 attagctattaggatgccatccaaaatctgtctaccctttataaaagctgattgagaagcagacacaacagtccccaccaccattctcaaacgattggcc 23823493  T
Q  539 aatacctttgatagaatt 556  Q
    || || ||||||| ||||    
T  23823494 aaaacttttgataaaatt 23823511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 139 - 298
Target Start/End: Original strand, 9820442 - 9820601
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    |||||||||||||||||  |  |||||||| ||||| | ||||||||| || ||||| |||||||||||||||||  |||| || | || |||||||||     
T  9820442 cgcagacatcatcacatcaaggccttcagcagctaacacaaacaaaaaaggggaaagaggatccccttgacggagttctctttcaaaatgaaactcatcg 9820541  T
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaa 298  Q
    |||||||| ||||| |||||||| ||||| || || ||||||||||| ||||||||||||    
T  9820542 gtcggacaaccattcactaacactgatgctgttgcagttgtaacacactccataatccaa 9820601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 16672075 - 16672133
Alignment:
Q  423 catcatcaactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaata 481  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16672075 catcatcgactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaata 16672133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 8131462 - 8131511
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaacat 396  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  8131462 taaccctaatcaacagaatcatacgctttctcaaaatccactttaaacat 8131511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 16185784 - 16185849
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacat 396  Q
    |||||||||||||| ||| ||||| |||||||| ||||| || |||||||| ||| ||||||||||    
T  16185784 cataacctcatcaaggtacccccactcaacagagtcatacgccttttcaaagtccgctttaaacat 16185849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 21739158 - 21739097
Alignment:
Q  334 aacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||| |||||||||||  || ||||| || || ||||||||||||||||||||||    
T  21739158 aacctcatcaaggtaaccccaattgaccgaatcgtacgccttttcaaaatccactttaaaca 21739097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 30165974 - 30165926
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||| ||||||||| |||||||||||||| || |||||||    
T  30165974 taaccccaatcaatagaatcatatgctttttcaaaatcgaccttaaaca 30165926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 6924103 - 6924060
Alignment:
Q  422 gcatcatcaactaattcatttgcaatcaaaataccatcaagaat 465  Q
    ||||||||||| | |||||||||||||||||| |||||||||||    
T  6924103 gcatcatcaacaacttcatttgcaatcaaaatcccatcaagaat 6924060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 19918880 - 19918835
Alignment:
Q  350 ccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||| ||||||||||| || ||||||||||||||||| ||||    
T  19918880 ccccaatctacagaatcatacgccttttcaaaatccactttgaaca 19918835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 411
Target Start/End: Complemental strand, 52906679 - 52906630
Alignment:
Q  362 gaatcataggctttttcaaaatccactttaaacatgagtaactctttctt 411  Q
    |||||||| ||||| |||||||||||||| |||| |||||| ||||||||    
T  52906679 gaatcataagctttctcaaaatccactttgaacaagagtaattctttctt 52906630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 2365755 - 2365815
Alignment:
Q  335 acctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||| ||| |||||||| || |||||||| || ||||||||||| ||||| ||||    
T  2365755 acctcatcaaggtacccccaatctaccgaatcatacgccttttcaaaatctactttgaaca 2365815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 12333755 - 12333691
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||| ||||  || ||||| ||||| || ||||| || ||||||||||||||||||||||    
T  12333755 cataacctcctcaagatacccccagtcaactgagtcatacgccttttcaaaatccactttaaaca 12333691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 12953887 - 12953955
Alignment:
Q  229 aaactcatcagtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatcca 297  Q
    |||||||||  ||||||||||||| |||||||  |||||||| ||||||  ||||||||| | ||||||    
T  12953887 aaactcatctatcggacacccattcactaacatcgatgccgttgccgttccaacacattcaaaaatcca 12953955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 44 - 365
Target Start/End: Original strand, 36952488 - 36952806
Alignment:
Q  44 actaataaggtatcatctgcaaactgcaaatgagacaccaacacattagcttgcaccccaatagcataaggagtgaacaacccagacgttaccaacgcag 143  Q
    |||| ||| |||||||| ||||||||||| ||||| |||| ||||||| ||||| |||| |||||||| ||||||||||||||   | ||||||||||||    
T  36952488 actagtaaagtatcatcggcaaactgcaagtgagaaaccagcacattaacttgcgccccgatagcatatggagtgaacaaccctctcattaccaacgcag 36952587  T
Q  144 acatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcgg 243  Q
    |||||   |||||||||| ||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||  | || ||||||||||||||||||||    
T  36952588 acatc---acatttaaactttctgctgctaaaaggaacaaaaacagagaatgcggatccccttgacggagacccttttcaagattaaactcatcagtcgg 36952684  T
Q  244 acacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatca 343  Q
     |||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36952685 gcacccattaactaacacagatgtcgtcgccgttgtaatacactccataatccaagaccgccaaacacacggaaaattcatcttaatcataacctcatca 36952784  T
Q  344 atgtaaccccaatcaacagaat 365  Q
    ||||| ||||||||||||||||    
T  36952785 atgtagccccaatcaacagaat 36952806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 139 - 508
Target Start/End: Complemental strand, 23156990 - 23156621
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    ||||| |||||||||||| |  |||||| | ||||| ||||||| ||| || ||||| |||||||||||||||||  |||| || | || ||||||||||    
T  23156990 cgcagtcatcatcacattaaggccttcaacagctaacagaaacagaaaaggggaaagaggatccccttgacggagttctctttcaaaatgaaactcatca 23156891  T
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacct 338  Q
    |||||||| ||||| |||| ||| || || || ||||||| ||| || |||||||||||||| ||||| | || |||||| ||||| |||  ||| ||||    
T  23156890 gtcggacaaccattcactagcacggaagctgtagccgttgcaacgcactccataatccaagaacgccacatacgcggaaaattcattttacccatcacct 23156791  T
Q  339 catcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattc 438  Q
    |||| | ||| |||||||| || |||||||| || ||||||||||||||||||||||| |||| |||||| |  ||   |||||||||||| || |||||    
T  23156790 catctaagtacccccaatccaccgaatcatacgccttttcaaaatccactttaaacataagtagctctttatcattacgctttgcatcatctaccaattc 23156691  T
Q  439 atttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccaca 508  Q
    |||||| |||| ||| ||||| | ||| ||||||||||||||||| | ||| |||||| |||||||||||    
T  23156690 atttgctatcagaatcccatccaaaatctgtctacccttaataaaagcagattgagaagcagacaccaca 23156621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 139 - 540
Target Start/End: Complemental strand, 15647907 - 15647506
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    |||||||||||||||||  | |||||| || || || ||||| | ||| || ||||| |||||||||||||| || ||||| || | || |||||||||     
T  15647907 cgcagacatcatcacatcaagaccttcggcagcaaagagaaatagaaaaggggaaagaggatccccttgacgaagtcctctttcaaaatgaaactcatcg 15647808  T
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacct 338  Q
    || ||||| ||||| |||||||||||||| || || || |||||||| |||||||||||| | |||||   | ||||||| ||||| |||||||| ||||    
T  15647807 gttggacaaccattcactaacacagatgctgtagcagtggtaacacactccataatccaacaacgccacttagacggaaaattcattttaatcatcacct 15647708  T
Q  339 catcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattc 438  Q
    |||| | ||||| |||||| || || ||||| || ||||||||||||||||||||||| |||| |||||| |  ||   |||||||||||| |||| |||    
T  15647707 catctaagtaacaccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacactttgcatcatctactacttc 15647608  T
Q  439 atttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagcc 538  Q
    ||| || |||| ||||||||| | ||| |||||||| || ||||| | |||||||||| ||||||| ||| | || | |||| ||||||| |||||||||    
T  15647607 attagctatcagaataccatctaaaatctgtctaccttttataaaagcagactgagaagcagacacaacacttcccaccaccattctcaaacgattagcc 15647508  T
Q  539 aa 540  Q
    ||    
T  15647507 aa 15647506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 202 - 540
Target Start/End: Original strand, 25136461 - 25136799
Alignment:
Q  202 cccttgacggagacctctctcgagattaaactcatcagtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagac 301  Q
    |||||||||||| |||||||| | | |||||||||||||||| || |||||||| |||||  ||| | | |||||||||||||| ||||| ||||||||     
T  25136461 cccttgacggagccctctctcaaaactaaactcatcagtcgggcatccattaaccaacaccaatgtctttgccgttgtaacacactccatgatccaagat 25136560  T
Q  302 cgccaaacacacggaaagttcatcttaatcataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagta 401  Q
    | ||| |  |  | ||| || || |||| ||| |||||||||   ||||||||||| ||||  ||||| ||||| ||||||||||| |||||||| ||||    
T  25136561 caccacaatcttgaaaaatttattttaaccatcacctcatcatgataaccccaatcgacagtgtcataagctttctcaaaatccaccttaaacataagta 25136660  T
Q  402 actctttctttttgacctttgcatcatcaactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcaga 501  Q
    |||||| ||| ||    || |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||| | ||||||||||  |||    
T  25136661 actcttccttattttttttcgcatcatcaactaactcattagcaatcaaaataccatctagagtttgtctacccttaataaaagcagactgagaagtaga 25136760  T
Q  502 caccacattaccaatcacccttctcaatcgattagccaa 540  Q
    ||| ||||||||||  ||| |||  |||| |||||||||    
T  25136761 cacaacattaccaacaacctttcgtaatctattagccaa 25136799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 143 - 556
Target Start/End: Complemental strand, 17825617 - 17825204
Alignment:
Q  143 gacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcg 242  Q
    |||||||||||||| | ||||||||| ||||| | ||||||||| || ||||| || ||||||||||| || |||||||| | ||  |||||||  ||||    
T  17825617 gacatcatcacattaagaccttcagcagctaacaaaaacaaaaatggggaaagagggtccccttgacgaaggcctctctcaaaatggaactcatttgtcg 17825518  T
Q  243 gacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatc 342  Q
    |||| ||||| ||||| || ||||| || |||||||||| ||| |||||||||||||| | ||| |    || ||| ||||| |||| ||| ||||||||    
T  17825517 gacaaccatttactaatactgatgctgtagccgttgtaatacactccataatccaagagcaccacaggtgcgaaaaattcattttaaccatcacctcatc 17825418  T
Q  343 aatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcattt 442  Q
     | ||| | | |||| || ||||||||  ||||||||||||||||||||||||| ||||||||||| || ||   ||| |||||||| || ||||||||     
T  17825417 taagtacctcaaatccacggaatcatacactttttcaaaatccactttaaacataagtaactctttattattacacttcgcatcatctaccaattcatta 17825318  T
Q  443 gcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaata 542  Q
    || || | ||| ||||| | ||| ||||||| | | ||||| | ||| |||||| ||||||| ||||| || | |||| ||||||| ||||| || || |    
T  17825317 gctattagaatcccatccaaaatctgtctacgcgttataaaagcagattgagaagcagacacaacattccctaccaccgttctcaaacgattggctaaaa 17825218  T
Q  543 cctttgatagaatt 556  Q
    | ||||||| ||||    
T  17825217 cttttgataaaatt 17825204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 504
Target Start/End: Original strand, 47420281 - 47420450
Alignment:
Q  335 acctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaacta 434  Q
    |||||||||| ||| ||||||||||| |||||||| || ||||||||||||||||| ||||  |  |  ||||||||      | |||| |||||||| |    
T  47420281 acctcatcaaggtacccccaatcaaccgaatcatacgccttttcaaaatccactttgaacaacaaaaggtctttcttagatctccttgcctcatcaacca 47420380  T
Q  435 attcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacac 504  Q
      ||||| |||||||| ||||||||||||||||||||| |||| | ||| | ||||||||  ||||||||    
T  47420381 cctcattcgcaatcaagataccatcaagaatttgtctatccttcacaaaagcagactgagtttcagacac 47420450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 1827208 - 1827144
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||  || |||||||||||| ||||||| |||||||||||||||||||| ||||    
T  1827208 cataacctcatcaagttacccccaatcaacaaaatcatacgctttttcaaaatccactttgaaca 1827144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 7661959 - 7661911
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||||||||||| |||||||||||||| || |||||||    
T  7661959 taaccccaatcaacagaatcatacgctttttcaaaatcgaccttaaaca 7661911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 20397054 - 20397102
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  20397054 taaccccaatcaacagaatcctaggccttttcaaaatccaccttaaaca 20397102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 26695420 - 26695463
Alignment:
Q  350 ccccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    ||||| |||||||||||||| |||||||||||||||||||||||    
T  26695420 ccccagtcaacagaatcatatgctttttcaaaatccactttaaa 26695463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 510
Target Start/End: Complemental strand, 23641169 - 23641079
Alignment:
Q  420 ttgcatcatcaactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacatt 510  Q
    |||| |||||||| |  ||||| |||||||| ||||||||||||||||||||| |||| | ||| | ||||||||  |||||||| |||||    
T  23641169 ttgcctcatcaaccacctcattcgcaatcaagataccatcaagaatttgtctatccttcacaaaagcagactgagtttcagacacaacatt 23641079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 510
Target Start/End: Complemental strand, 23646827 - 23646737
Alignment:
Q  420 ttgcatcatcaactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacatt 510  Q
    |||| |||||||| |  ||||| |||||||| ||||||||||||||||||||| |||| | ||| | ||||||||  |||||||| |||||    
T  23646827 ttgcctcatcaaccacctcattcgcaatcaagataccatcaagaatttgtctatccttcacaaaagcagactgagtttcagacacaacatt 23646737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 542
Target Start/End: Original strand, 54685898 - 54686090
Alignment:
Q  350 ccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgaccttt----gcatcatcaactaattcatttgca 445  Q
    ||||||| |||| ||||||| ||||| ||||||||||| |||||||| |  | |||||||||    || |||    || |||||||| |  ||||| |||    
T  54685898 ccccaatgaacaaaatcataagctttctcaaaatccaccttaaacatcatcatctctttctt----acatttacgagcctcatcaaccacctcattcgca 54685993  T
Q  446 atcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagccaata 542  Q
    |||| ||| |||||||| |||||||||  ||||| ||||| |||||| | |||||| |  ||| ||||||| |||  |||||||| |||||||||||    
T  54685994 atcagaatcccatcaaggatttgtctattcttaacaaacgcagactgcgtatcagaaataacactaccaataacctgtctcaatctattagccaata 54686090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 19161821 - 19161772
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaacat 396  Q
    |||||||||||||| ||||| || ||||| ||||||||||||||||||||    
T  19161821 taaccccaatcaaccgaatcgtacgctttctcaaaatccactttaaacat 19161772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 40689556 - 40689605
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaacat 396  Q
    |||||||||||||||||||| || ||||| ||||||||||| ||||||||    
T  40689556 taaccccaatcaacagaatcgtacgctttctcaaaatccaccttaaacat 40689605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 137430 - 137514
Alignment:
Q  161 ccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcggac 245  Q
    ||||||||||| || | ||| ||||| || ||||| ||||||||||||||||| || ||||||| || |||||| || |||||||    
T  137430 ccttcagctgccaacataaataaaaaaggggaaaggggatccccttgacggagccccctctcgatatgaaactcctctgtcggac 137514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 29552452 - 29552404
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||||    
T  29552452 taaccccaatcaaccgagtcatatgccttttcaaaatccactttaaaca 29552404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 10561976 - 10561928
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||| ||||| |||||||| ||||| |||||||| |||||||    
T  10561976 taaccccaatcgacagagtcataggccttttcgaaatccaccttaaaca 10561928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 23280292 - 23280340
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||| ||||| ||||||| |||||||| || |||||||    
T  23280292 taaccccaatcaacataatcacaggctttctcaaaatctaccttaaaca 23280340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 28049517 - 28049441
Alignment:
Q  179 aacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcggacacccattaac 255  Q
    ||||||||||| || |  |||||||||||||| || || |||| || |  |||||| ||||||||||||||||||||    
T  28049517 aacaaaaacggcgacaaaggatccccttgacgaagtcccctctggataggaaactcctcagtcggacacccattaac 28049441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 134 - 540
Target Start/End: Complemental strand, 223573 - 223152
Alignment:
Q  134 accaacgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaact 233  Q
    |||| |||||||||||||||||  ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || |||||||| || |||||||    
T  223573 accaccgcagacatcatcacatgaaaaccttcagcagctaacagaaacaaaaacggagaaagaggatccccttgacgaaggcctctctcaagcttaaact 223474  T
Q  234 catcagtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcat 333  Q
    ||||||| ||||| ||||| |||||||| || | | | |||||||| ||||| |||||||||||||| ||||| | ||  ||||| ||||| |||| |||    
T  223473 catcagtaggacatccattgactaacactgaagtcatggccgttgtgacacactccataatccaagatcgccataaacgtggaaaattcattttaaccat 223374  T
Q  334 aacctcatcaatgtaaccccaatcaa------------cagaatcataggctttttcaaaatccactttaaacatgagtaa--ctctttctttttgac-c 418  Q
     ||||| || | ||||||||||||||            | |||||||| ||||| ||||||||||| |||||||| |||||  || ||| ||||| || |    
T  223373 cacctcctctaagtaaccccaatcaactgaatcataagctgaatcataagctttctcaaaatccaccttaaacataagtaaatcttttttttttttacac 223274  T
Q  419 tttgcatcatcaactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatca 518  Q
    |||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||| | ||| |||||| |||| || ||||| || | ||    
T  223273 tttgcatcatcaactaattcatttgctattaaaatcccatccagaatttgtctacccttgataaaagcagattgagaaccagatacaacatttcccacca 223174  T
Q  519 cccttctcaatcgattagccaa 540  Q
     | ||||||||||||| |||||    
T  223173 tcattctcaatcgattggccaa 223152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 139 - 540
Target Start/End: Original strand, 21965975 - 21966376
Alignment:
Q  139 cgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatca 238  Q
    |||||||||||||||||  |  |||||||| ||||| ||||||| ||| || ||||| |||||||||||||| |||||||| || | || |||||||||     
T  21965975 cgcagacatcatcacatcaaggccttcagcagctaacagaaacagaaaaggggaaagaggatccccttgacgaagacctctttcaaaatgaaactcatcg 21966074  T
Q  239 gtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacct 338  Q
    ||||| || ||||| |||||||| ||||| || || ||||||||||| |||||||||||| | |||||   |  |||||| ||||| |||||||| ||||    
T  21966075 gtcgggcaaccattcactaacactgatgctgtagcagttgtaacacactccataatccaacaacgccacttagtcggaaaattcattttaatcatcacct 21966174  T
Q  339 catcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattc 438  Q
    |||| | |||||||||||| || || ||||| || ||||||||||||||||||||||| |||| |||||| |  ||   ||| |||||||| |||| |||    
T  21966175 catctaagtaaccccaatccaccgagtcataagccttttcaaaatccactttaaacataagtagctctttatcattacacttcgcatcatctactacttc 21966274  T
Q  439 atttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgattagcc 538  Q
    ||| || |||| |||| |||| | ||| |||||||| || || || | |||||||||| ||||||||||| | |||| |||| ||||||| |||||||||    
T  21966275 attagctatcagaatagcatccaaaatctgtctaccttttatgaaagcagactgagaagcagacaccacacttccaaccaccattctcaaacgattagcc 21966374  T
Q  539 aa 540  Q
    ||    
T  21966375 aa 21966376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 9667674 - 9667609
Alignment:
Q  330 tcataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||| ||||||||||||||| || || || || ||||||||||||||||||||||    
T  9667674 tcataacctcatcaaggtaaccccaatcaactgagtcgtaagccttttcaaaatccactttaaaca 9667609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 28399197 - 28399155
Alignment:
Q  351 cccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  28399197 cccagtcaacagaatcataggctttttcaaaatccactttaaa 28399155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 6724304 - 6724255
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaacat 396  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  6724304 taaccccaatcaacagaatcgtacgctttctcaaaatccactttaaacat 6724255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 37326982 - 37327058
Alignment:
Q  182 aaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcggacacccattaactaa 258  Q
    |||||||| ||||| || ||||||||||| ||||||||||| | |  ||||||||| |||||||||||||| |||||    
T  37326982 aaaaacggtgaaagagggtccccttgacgaagacctctctctatagaaaactcatccgtcggacacccattcactaa 37327058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 4221598 - 4221544
Alignment:
Q  339 catcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    |||||| ||||||||| |||||||| ||||| |||||||||||||| ||||||||    
T  4221598 catcaaggtaaccccagtcaacagattcatatgctttttcaaaatcaactttaaa 4221544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 11230300 - 11230239
Alignment:
Q  334 aacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||| ||||||||||||||| || || || || ||||||||||| ||||||||||    
T  11230300 aacctcatcaaggtaaccccaatcaacggagtcgtaagccttttcaaaatctactttaaaca 11230239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 35489329 - 35489369
Alignment:
Q  350 ccccaatcaacagaatcataggctttttcaaaatccacttt 390  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  35489329 ccccaatcaacagagtcatatgctttttcaaaatccacttt 35489369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 39115669 - 39115623
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||||    
T  39115669 taaccccaatcaatagagtcataggctttttcaaaatctaccttaaa 39115623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 2206473 - 2206424
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaacat 396  Q
    |||||| ||||||||||||| || ||||| ||||||||||| ||||||||    
T  2206473 taaccctaatcaacagaatcgtacgctttctcaaaatccaccttaaacat 2206424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 10690030 - 10690075
Alignment:
Q  350 ccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||| |||||||| |||||||| |||||||| |||||||    
T  10690030 ccccaatcaactgaatcatacgctttttcgaaatccaccttaaaca 10690075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 13417148 - 13417197
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaacat 396  Q
    ||||||||||||||| |||  || ||||| ||||||||||||||||||||    
T  13417148 taaccccaatcaacataattgtacgctttctcaaaatccactttaaacat 13417197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 3152486 - 3152422
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||| |||||||  |||  ||||||||| || ||| | |||||||||||||||||||||||||    
T  3152486 cataacatcatcaagataattccaatcaaccgagtcaaacgctttttcaaaatccactttaaaca 3152422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 143 - 477
Target Start/End: Original strand, 49371153 - 49371487
Alignment:
Q  143 gacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcg 242  Q
    |||||||| ||||| | ||||||| | ||||| | ||||||||||||  |||| ||||||||||||||||| |||||||| | ||  |||||||| ||||    
T  49371153 gacatcattacattaagaccttcaacagctaacaaaaacaaaaacgggaaaagaggatccccttgacggaggcctctctcaaaatggaactcatctgtcg 49371252  T
Q  243 gacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatc 342  Q
    |||| ||||| ||||| || |||||||| |||| ||||||||| |||||||||||||| ||||| | |  |||||| ||||| |||||||| ||||||||    
T  49371253 gacaaccatttactaaaactgatgccgtagccgctgtaacacactccataatccaagagcgccacagatgcggaaaattcattttaatcatcacctcatc 49371352  T
Q  343 aatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcattt 442  Q
     | ||| | |||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| || ||   ||| |||||||| || ||||||||     
T  49371353 taagtacctccaatccacggaatcatatgctttttcaaaatccactttaaacataagtaactctttattattacacttcgcatcatctaccaattcatta 49371452  T
Q  443 gcaatcaaaataccatcaagaatttgtctaccctt 477  Q
    || || | ||| ||||| | ||| |||||||||||    
T  49371453 gctattagaatcccatccaaaatctgtctaccctt 49371487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 134 - 540
Target Start/End: Original strand, 26997337 - 26997742
Alignment:
Q  134 accaacgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaact 233  Q
    |||||||| |||||||| |||||||| || || || ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |   | ||||    
T  26997337 accaacgctgacatcattacatttaagccctccgccgctaatagaaacaaaaaaggagaaagcggatccccttgtcggagacctctctcaaacctgaact 26997436  T
Q  234 catcagtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcat 333  Q
    |||||||||| ||||||||||| | ||| |||| ||| ||||| | |||||  ||||| ||||| ||   ||| | |   ||||| ||||| |||  |||    
T  26997437 catcagtcgggcacccattaaccagcaccgatgtcgttgccgtcgaaacacgctccattatccacgattaccacaaaggtggaaaattcattttacccat 26997536  T
Q  334 aacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaact 433  Q
     ||||| ||||  || |||||||||||||| || ||||| || |||||| |||| |||||||| |||| ||||||||| ||    || ||||||||||||    
T  26997537 cacctcgtcaagatacccccaatcaacagagtcgtaggccttctcaaaacccaccttaaacataagtagctctttcttatt-tttttcgcatcatcaact 26997635  T
Q  434 aattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacaccacattaccaatcacccttctcaatcgat 533  Q
    || || || |||||||||||| |||| ||||||||||| || |||||||| | |||||||||| ||| |||||| |||||||  ||| ||||||||| ||    
T  26997636 aactcgttagcaatcaaaatagcatccagaatttgtctccctttaataaaggcagactgagaagcagtcaccactttaccaacaaccattctcaatctat 26997735  T
Q  534 tagccaa 540  Q
    |||||||    
T  26997736 tagccaa 26997742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 39431758 - 39431823
Alignment:
Q  330 tcataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  39431758 tcataacctcatcaaggtaaccccaatcaacagagtcataagccttttcaaaatccactttaaaca 39431823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 20797132 - 20797197
Alignment:
Q  330 tcataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||| |||||||||||||||||| || || || ||||||||||||||||||||||    
T  20797132 tcataacctcatcaaggtaaccccaatcaacagagtcgtaagccttttcaaaatccactttaaaca 20797197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 35542507 - 35542571
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    ||||||||||||||  || |||||||||||||||||| | || ||||||||||||||||| ||||    
T  35542507 cataacctcatcaagatacccccaatcaacagaatcaaacgccttttcaaaatccactttgaaca 35542571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 504
Target Start/End: Original strand, 6052165 - 6052249
Alignment:
Q  420 ttgcatcatcaactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacac 504  Q
    |||| |||||||| |  ||||| |||||||| ||||||||||||||||||||| |||| | ||| | ||||||||  ||||||||    
T  6052165 ttgcctcatcaaccacctcattcgcaatcaagataccatcaagaatttgtctatccttcacaaaagcagactgagtttcagacac 6052249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 32643360 - 32643408
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||||||| |||||||| |||||||||||||| || |||||||    
T  32643360 taaccccaatcaactgaatcatacgctttttcaaaatcaaccttaaaca 32643408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 393
Target Start/End: Complemental strand, 17132174 - 17132112
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    |||||||||||| | |||||| ||||||||| ||||||| |||||||| ||||  ||||||||    
T  17132174 cataacctcatccaagtaacctcaatcaacaaaatcatatgctttttcgaaattgactttaaa 17132112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 14342581 - 14342622
Alignment:
Q  352 ccaatcaacagaatcataggctttttcaaaatccactttaaa 393  Q
    ||||| ||| |||||||| |||||||||||||||||||||||    
T  14342581 ccaatgaactgaatcataagctttttcaaaatccactttaaa 14342622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 411
Target Start/End: Original strand, 19043627 - 19043676
Alignment:
Q  362 gaatcataggctttttcaaaatccactttaaacatgagtaactctttctt 411  Q
    |||||||| ||||| |||||||||||||| |||| |||||| ||||||||    
T  19043627 gaatcataagctttctcaaaatccactttgaacaagagtaattctttctt 19043676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 492
Target Start/End: Original strand, 48435728 - 48435784
Alignment:
Q  436 ttcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactg 492  Q
    |||||||||||| |  ||||||||||||||||| ||| |||||||||| | ||||||    
T  48435728 ttcatttgcaataaggataccatcaagaatttgcctatccttaataaaagcagactg 48435784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 50816789 - 50816713
Alignment:
Q  176 agaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcggacacccatt 252  Q
    ||||||| ||||||||| |  |||||||||||||| ||||||||||| | |  ||| ||||| || |||||||||||    
T  50816789 agaaacagaaacggagacaaaggatccccttgacgaagacctctctccataggaaattcatccgtaggacacccatt 50816713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 144 - 443
Target Start/End: Complemental strand, 57236 - 56937
Alignment:
Q  144 acatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaactcatcagtcgg 243  Q
    ||||||||||||| | ||||||| | ||||| | |||||||||||||||||| || |||||||||||||| |||||||| | || |||||||||||||||    
T  57236 acatcatcacattaagaccttcaacagctaacaaaaacaaaaacggagaaagagggtccccttgacggaggcctctctcaaaatgaaactcatcagtcgg 57137  T
Q  244 acacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgccaaacacacggaaagttcatcttaatcataacctcatca 343  Q
     || ||||| |||||||| |||| ||| ||| |||||||||| ||||||||| |||  | ||| | || | |||| ||||| |||  ||| ||||||||     
T  57136 gcaaccatttactaacactgatgtcgtagccattgtaacacactccataatcgaagtgcaccacagacgcagaaaattcattttagccattacctcatct 57037  T
Q  344 atgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaactaattcatttg 443  Q
    | ||| | |||||| || |||||||| |||||||||||||| || |||||||| ||||||||||| || ||   ||| |||| ||| |||||||||||||    
T  57036 aggtatctccaatccacggaatcatacgctttttcaaaatcaaccttaaacataagtaactctttattattacacttcgcattatctactaattcatttg 56937  T

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Target: scaffold0121 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 134 - 483
Target Start/End: Original strand, 32917 - 33257
Alignment:
Q  134 accaacgcagacatcatcacatttaaaccttcagctgctaaaagaaacaaaaacggagaaagcggatccccttgacggagacctctctcgagattaaact 233  Q
    ||||| || |||||||| ||||| | ||| || || || || |||||||  || ||||| || |||||||||||||| |||| |||||  | |  |||||    
T  32917 accaaagccgacatcataacattaagaccctccgccgccaagagaaacaggaaaggagagagaggatccccttgacgaagacttctctaaaaaaaaaact 33016  T
Q  234 catcagtcggacacccattaactaacacagatgccgtcgccgttgtaacacattccataatccaagaccgcca-aacacacggaaagttcatcttaatca 332  Q
    |||  ||||| | ||||||||| ||||| || |  || |  || || ||||| |||||||||||||| ||||| ||||| |||||| ||||| |||  ||    
T  33017 catttgtcgggctcccattaaccaacaccgaagttgttgttgtcgtgacacactccataatccaagagcgccataacac-cggaaaattcattttagaca 33115  T
Q  333 taacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaacatgagtaactctttctttttgacctttgcatcatcaac 432  Q
    | |||||||||| |||||||||||| ||| ||||||| || || ||||| || |||||||| | ||| |  |||||         ||| |||||||||||    
T  33116 tcacctcatcaaggtaaccccaatccacataatcatacgccttctcaaagtctactttaaaaaggagaagatcttt---------cttggcatcatcaac 33206  T
Q  433 taattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaa 483  Q
     |  |||||||| |||||||| ||||||| ||||||| ||| |||||||||    
T  33207 aatgtcatttgctatcaaaattccatcaaaaatttgtttactcttaataaa 33257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 4725 - 4789
Alignment:
Q  331 cataacctcatcaatgtaaccccaatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||||||||| ||| |||||||||||||||||| | || ||||||||||||||||| ||||    
T  4725 cataacctcatcaaggtacccccaatcaacagaatcaaacgccttttcaaaatccactttgaaca 4789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 395
Target Start/End: Complemental strand, 14311 - 14269
Alignment:
Q  353 caatcaacagaatcataggctttttcaaaatccactttaaaca 395  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  14311 caatcaacggaatcataagctttttcaaaatccactttaaaca 14269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 504
Target Start/End: Complemental strand, 104421 - 104337
Alignment:
Q  420 ttgcatcatcaactaattcatttgcaatcaaaataccatcaagaatttgtctacccttaataaacgtagactgagaatcagacac 504  Q
    |||| |||||||| |  ||||| |||||||| ||||||||||||||||||||| |||| | ||| | ||||||||  ||||||||    
T  104421 ttgcctcatcaaccacctcattcgcaatcaagataccatcaagaatttgtctatccttcacaaaagcagactgagtttcagacac 104337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 394
Target Start/End: Original strand, 183604 - 183651
Alignment:
Q  347 taaccccaatcaacagaatcataggctttttcaaaatccactttaaac 394  Q
    |||||||| |||||||| |||||||| |||||||||||||| ||||||    
T  183604 taaccccagtcaacagactcataggccttttcaaaatccaccttaaac 183651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 20465 - 20507
Alignment:
Q  350 ccccaatcaacagaatcataggctttttcaaaatccactttaa 392  Q
    |||||||| |||||||||||||||||||| |||||||| ||||    
T  20465 ccccaatccacagaatcataggctttttctaaatccaccttaa 20507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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