View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15278_low_5 (Length: 493)
Name: NF15278_low_5
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15278_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 338
Target Start/End: Original strand, 38967844 - 38968168
Alignment:
| Q |
14 |
cacttctctatttgacaaaagagagcatattgagaaaccacatagcacttgcaatcttcttcgcaaagttcaggtattaaagcaattggtcacatcattg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38967844 |
cacttctctatttgacaaaagagagcatattgagaaaccacatagcacttgcaatcttcttcgcaaagttcaggtattaaagcaattggtcacatcattg |
38967943 |
T |
|
| Q |
114 |
ttcactgtatatttatgtttacactttccacatatcaaatgttgcaactttgacttttgctgaatgaagcgaacaatggaatgtgttaggcctaatccaa |
213 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38967944 |
ttcactgtatatttatgtttccactttctacatatcaaatgttgcaactttgagttttgctgaatgaagcgaacaatggaatgagttaggcctaatccaa |
38968043 |
T |
|
| Q |
214 |
gattgtaagggaagcaagtaaaaattactccttactaggattttgtttatggaagttggatagttatgttcctctcctcgaacatattatgtgtatttcc |
313 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38968044 |
gattgtaagagaagcaagaaaaaattactccttactaggattttgtttatggaagttggatagttatgttcctctcctcgaacatattatgtgcatttcc |
38968143 |
T |
|
| Q |
314 |
ccataactctgctatcacaaacaaa |
338 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
38968144 |
ccataactctgctatcacaaacaaa |
38968168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 365 - 482
Target Start/End: Original strand, 38968261 - 38968376
Alignment:
| Q |
365 |
ctaatgctgtcggatgcgattcgttaaaactagtaaaatttgaaacaatttgctgacaagggacataggtacaaagaatatagtttctg-nnnnnnnctt |
463 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
38968261 |
ctaatgctgtcggatgcgattcgttaaaacta---aaatgtgaaacaatttgctgacaagggacataggtacagagaatatagtttctgttttttttctt |
38968357 |
T |
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| Q |
464 |
tatcttcgtagcttccttt |
482 |
Q |
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||||||||||||||||||| |
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| T |
38968358 |
tatcttcgtagcttccttt |
38968376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 38992394 - 38992503
Alignment:
| Q |
14 |
cacttctctatttgacaaaagagagcatattgagaaaccacatagcacttgcaatcttcttcgcaaagttcaggtattaaagcaattggtcacatcattg |
113 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
38992394 |
cacttctctatttgacaaaagggagcatattgagaaactgcataggacttgtaatcttcttcgcaaagttcaggtatcaaagcaattgtccatgtcattg |
38992493 |
T |
|
| Q |
114 |
ttcactgtat |
123 |
Q |
| |
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|||| ||||| |
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| T |
38992494 |
ttcattgtat |
38992503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 195 - 338
Target Start/End: Original strand, 47594681 - 47594825
Alignment:
| Q |
195 |
tgtgttaggcctaatccaagattgtaagggaagcaagtaaaaattactccttactaggattttgtttatggaagttggatagttatgttcc---tctcct |
291 |
Q |
| |
|
||||||||||| |||| ||||| |||| |||||| | ||| ||||||||||| || ||||||||||| ||||||||||||||||||||| ||||| |
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| T |
47594681 |
tgtgttaggccctatcccagattttaagagaagcatgcaaa--ttactccttaccagaattttgtttatagaagttggatagttatgttcccttcctcct |
47594778 |
T |
|
| Q |
292 |
cgaacatattatgtgtatttccccataactctgctatcacaaacaaa |
338 |
Q |
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|||||||||||| || ||| ||||||| || ||||||||||||||| |
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| T |
47594779 |
tgaacatattatgcgtgtttgcccataattccgctatcacaaacaaa |
47594825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 47594943 - 47595003
Alignment:
| Q |
383 |
attcgttaaaactagtaaaatttgaaacaatttgctgacaagggacataggtacaaagaatata |
446 |
Q |
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|||||||||||||| ||||||| ||||||||||||||| |||| ||||||||| |||||||| |
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| T |
47594943 |
attcgttaaaacta---aaatttggaacaatttgctgacatgggagataggtacagagaatata |
47595003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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