View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15278_low_8 (Length: 416)
Name: NF15278_low_8
Description: NF15278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15278_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 42121144 - 42121047
Alignment:
| Q |
253 |
tttggttgagatacagacacttggtagagggtttctagtttgaaaaagtatgctgcaattctgcatagagtgtatcttgattgtggagacacttttag |
350 |
Q |
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| T |
42121144 |
tttggttgagatacaggaacttggtagagggtatctagtttgaaaaagtatgctgcaactctgcatagagtgtatcttgttggtggagacacttttag |
42121047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 42121237 - 42121172
Alignment:
| Q |
192 |
tgataattgtattggtagtgaccagataga-tatctaagatttattgtatactctagaatgttttg |
256 |
Q |
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| T |
42121237 |
tgataattgtattggtggtgaccaactaatctatctaagatttattgtatactctagaatgttttg |
42121172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 42121374 - 42121310
Alignment:
| Q |
10 |
aatcataatttttgttttctctgtttctgttacttttcatcactgaagagtgtggcacagctcatag |
76 |
Q |
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| T |
42121374 |
aatcataacttttgttttctctgtttc--ttacttttcatcaccaaagattgtggcacggctcatag |
42121310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 1919899 - 1920031
Alignment:
| Q |
39 |
ttacttttcatcactgaagagtgtggcacagctcatagataatcagttcatccatgaaaagcatgatatagatttggaatatcttaagatgacattttct |
138 |
Q |
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| T |
1919899 |
ttacttttcatcgccacagagtgtggcacagctgacagagaatcagtatatggatgaagagcttgatattgatttggaatatcttaggatgacatttcct |
1919998 |
T |
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| Q |
139 |
ggtacatctgatgagtaccttgtagatgtctac |
171 |
Q |
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| T |
1919999 |
ggtatatctgatgagtcacttgtagatgtctac |
1920031 |
T |
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