View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_1 (Length: 768)
Name: NF15279_high_1
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 36 - 325
Target Start/End: Complemental strand, 45545829 - 45545540
Alignment:
| Q |
36 |
tctaacaaacactcaccaacaagctcagacttattcacgtaaggacccaactgatcaattgggacaaaattgaatttagtctctggaacaaaagcagctt |
135 |
Q |
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| T |
45545829 |
tctaacaaacactcaccaacaagctcagacttattcacataaggacccaactgatcaattgggacaaaattgaatttagtctctggaacaaaagcagctt |
45545730 |
T |
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| Q |
136 |
cattggcaacctcttccacctcagaattctcattcaatgtcatttcataatcgtttgccacagttttgaaatttttgttagcaactttcaaagatccctt |
235 |
Q |
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| T |
45545729 |
cattggcaacctcttccacctcagaattctcattcaatgtcatttcataatcgtttaccacagttttgaaatttttgttagcaactttcaaagatccctt |
45545630 |
T |
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| Q |
236 |
tgaaatgtaatacacctttcccatagcaaatttgtcataaaacttccttgcagcatcattaaacatagttgcttgaatctgagtaccctg |
325 |
Q |
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| T |
45545629 |
tgaaatgtaatacacctttcccatagcaaatttgtcataaaacttccttgcagcatcattaaacatagttgcttgaatctgagtaccctg |
45545540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 400 - 608
Target Start/End: Complemental strand, 45545457 - 45545249
Alignment:
| Q |
400 |
tcaaatatcctgttccttacatcttcatcggtcagttcaacattgaatacacaaccttctcctctagcattcttataggtacgcatagttcctttgcttg |
499 |
Q |
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| T |
45545457 |
tcaaatattctgttccttacatcttcatcagtcagttcaacattgaatacacaaccttctcctctagcattcttataggtacgcatagttcctttgcttg |
45545358 |
T |
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| Q |
500 |
tgacactgaccttaattgtccaaccacccatataaggattcagtgaaacaagaggacgcactctacgagtcatggccaatctcgcaggagcagaactgaa |
599 |
Q |
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| T |
45545357 |
tgacactgaccttaattgtccaaccacccatataaggattcagtgaaacaagaggacgcactctacgggtcatggccaatctcgcaggagcagaactgaa |
45545258 |
T |
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| Q |
600 |
acgccattg |
608 |
Q |
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| T |
45545257 |
acgccattg |
45545249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 705 - 750
Target Start/End: Complemental strand, 45545180 - 45545135
Alignment:
| Q |
705 |
tttctgaatacaaataccaacaacaagtaaataacaaggacaagac |
750 |
Q |
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| T |
45545180 |
tttctgaagacaaataccaacaacaagtaaataacaaggacaagac |
45545135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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