View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_11 (Length: 405)
Name: NF15279_high_11
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_11 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 9102941 - 9103346
Alignment:
| Q |
1 |
tcaattaaggtacatttcagttaaattaatattgtttt-ttaatagagtggctaaaatatgtctccagaatatgtgatgtttgaacagatttctgaaaaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9102941 |
tcaattaaggtacatttcagttaaattaatattgtttttttaatagagtggctaaaatatgtctccagaatatgtgatgtatgaacagatttctgaaaaa |
9103040 |
T |
|
| Q |
100 |
tgggacatttatattcttggagttatgattttagagattgttgctgcaaagattcatgcacacgcgcttgcagcattggagctttgtgcattttctttgc |
199 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
9103041 |
taggacatttatattcttggagttatgattttagagattgttgctgcaaagattcgtgcacatgcgcttgcagcattggagcttcgtgcattttctttgc |
9103140 |
T |
|
| Q |
200 |
atgaagcacaatgaactcatttttaatagccattgctgtgggaccaatatagctcactttaagtgctagggacgaaagctggggggaacaaaccttcagg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9103141 |
atgaagcacaatgaactcatttttaatagccattgctgtgggaccaatatagctcactttaagtgctagggacgaaagttggggggaacaaaccttcagg |
9103240 |
T |
|
| Q |
300 |
atagaaagaaatccacataacaatgaccttattttctctcccgtttcagaacaagcttaggaggacaatttatttattttgtctttcgaaatcctctgtc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |||||||| |
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| T |
9103241 |
atagaaagaaatccacataacaatgaccttattttctctcccgtttcagaacaagcataggaggacaatttatttattttgcctttggaaaccctctgtc |
9103340 |
T |
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| Q |
400 |
aatgag |
405 |
Q |
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|||||| |
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| T |
9103341 |
aatgag |
9103346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 18990872 - 18990777
Alignment:
| Q |
56 |
atatgtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
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|||||||||| |||||||| ||||||| ||| |||||||||| | |||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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| T |
18990872 |
atatgtctccggaatatgtaatgtttggacaattttctgaaaattccgacatttatagttttggagttatgcttttagagattattgctgaaaaga |
18990777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 18979520 - 18979425
Alignment:
| Q |
56 |
atatgtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
| |
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|||||||||| |||||||| ||||||| ||| |||||||||||| ||||| |||| | ||||||||||| || |||||||| |||||| ||||| |
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| T |
18979520 |
atatgtctccggaatatgtaatgtttggacaattttctgaaaaatccgacatatatagttttggagttatgcttgtagagattattgctggaaaga |
18979425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 18995584 - 18995489
Alignment:
| Q |
56 |
atatgtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
| |
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|||||||||| ||||||| ||| ||| ||| |||||||||||| |||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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| T |
18995584 |
atatgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaaaga |
18995489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 20083816 - 20083721
Alignment:
| Q |
56 |
atatgtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
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|||||||||| |||||||| ||||| | ||| |||||||||||| |||||||||| | ||||||||||| || |||||||| |||||| ||||| |
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| T |
20083816 |
atatgtctccggaatatgtaatgttcggacaattttctgaaaaatccgacatttatagttttggagttatgcttatagagattattgctggaaaga |
20083721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 22207079 - 22207174
Alignment:
| Q |
56 |
atatgtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
| |
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|||||||||||||||||| ||| ||| ||| |||||||||||| |||||||||| | ||||||||||| ||||||||||| ||| || ||||| |
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| T |
22207079 |
atatgtctccagaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgttggaaaga |
22207174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 20235920 - 20235825
Alignment:
| Q |
56 |
atatgtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
| |
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|||||||||| ||||||| ||| | | ||| |||||||||||| |||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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| T |
20235920 |
atatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaaaga |
20235825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 22129904 - 22129809
Alignment:
| Q |
56 |
atatgtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
| |
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|||||||||| ||||||| ||| | | ||| |||||||||||| |||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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| T |
22129904 |
atatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaaaga |
22129809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 22001920 - 22001825
Alignment:
| Q |
56 |
atatgtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||||||||| || ||||||| | ||||||| ||||| |||||||||| |||| ||||| |
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| T |
22001920 |
atatgtctccagaatatgcaatgtttagacaattttctgaaaaatcagatatttatagttttggagtcatgatcatagagattgtagctggaaaga |
22001825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 24387200 - 24387281
Alignment:
| Q |
70 |
tatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
| |
|
||||| ||||||| ||| |||||||||||| |||||||||| | |||||||| || |||| |||||| |||||| ||||| |
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| T |
24387200 |
tatgtaatgtttggacaattttctgaaaaatccgacatttatagttttggagttctgcttttcgagattattgctggaaaga |
24387281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 49875 - 49970
Alignment:
| Q |
56 |
atatgtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
| |
|
|||||||||| ||||||| ||| ||| ||| |||||||||||| |||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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|
| T |
49875 |
atatgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaaaga |
49970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 7409 - 7504
Alignment:
| Q |
56 |
atatgtctccagaatatgtgatgtttgaacagatttctgaaaaatgggacatttatattcttggagttatgattttagagattgttgctgcaaaga |
151 |
Q |
| |
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|||||||||| ||||||| ||| ||| ||| |||||||||||| |||||||||| | ||||||||||| ||||||||||| |||||| ||||| |
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| T |
7409 |
atatgtctccggaatatgcaatgcttggacaattttctgaaaaatctgacatttatagttttggagttatgcttttagagattattgctggaaaga |
7504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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