View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_12 (Length: 398)
Name: NF15279_high_12
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 381
Target Start/End: Complemental strand, 34476646 - 34476280
Alignment:
| Q |
15 |
caaaggggagtgccaagaccttctaaaaaatgagtaaacctaaaattaggtcaaccaatcttacttttatcataatcactcctaacttcaacatgaatag |
114 |
Q |
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| T |
34476646 |
caaaggggagtgccaagaccttctaaaaaatgagtaaacctaaaattaggtcaaccaatcttacttttatcataatcactcctaacttcaacatgaatag |
34476547 |
T |
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| Q |
115 |
tatagtaatagacaaaagagttcaaagataagccaatgtttgctaaagcatcggcacaagtattaccctccctataaatatgaataaccacaaaattcat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
34476546 |
tatagtaatagacaaaagagttcaaagataagccaatgtttgctaaagcatcagcacaagtattatcctccctataaatatgagtaaccacaaaattcat |
34476447 |
T |
|
| Q |
215 |
aatagatagcaggatgagacaattattccacctgtttcttattcctcaaggcaccttgttcgtagatttgaaggctctaaccaccaacattgaatctatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34476446 |
aatagatagcaggatgagacaattattccacctgtttcttattcctcaaggcaccttgttcgtagatttgaaggctctaaccaccaacattgaatatatt |
34476347 |
T |
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| Q |
315 |
tataaccacaaattattccaaatttttaactttgcaaactcaatggctctcattgcaccacataggt |
381 |
Q |
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| T |
34476346 |
tataaccacaaattattccaattttttaactttgcaaactcaatagctctcattgcaccacataggt |
34476280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 22808278 - 22808460
Alignment:
| Q |
29 |
aagaccttctaaaaaatgagtaaacctaaaattaggtcaaccaatcttacttttatcataatcactcctaacttcaacatgaatagtatagtaatagaca |
128 |
Q |
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| T |
22808278 |
aagaccttctcaagagtgagtaaacctaaaattaggtcaaccaagcctatttttaacataataacccctaacatccaatggaatagtgctataataaaca |
22808377 |
T |
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| Q |
129 |
aaagagttcaaagataagccaatgtttgctaaagcatcggcacaagtattaccctccctataaatatgaataaccacaaaatt |
211 |
Q |
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|||| |||||| ||| || ||||| ||||||||||| ||||| ||||| || || ||| ||| |||| ||| |||||||| |
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| T |
22808378 |
aaagtgttcaagcttaatcctatgttagctaaagcatctgcacaggtatttccttctctacaaacatgagaaactacaaaatt |
22808460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 34028628 - 34028698
Alignment:
| Q |
32 |
accttctaaaaaatgagtaaacctaaaattaggtcaaccaatcttacttttatcataatcactcctaactt |
102 |
Q |
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||||||| || | ||| |||||||||||||||| ||||||| | || ||||| |||||||||||||||||| |
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| T |
34028628 |
accttctcaatagtgattaaacctaaaattaggccaaccaaacctatttttaacataatcactcctaactt |
34028698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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