View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_13 (Length: 364)
Name: NF15279_high_13
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 36193066 - 36192723
Alignment:
| Q |
11 |
ttattctgtagagcgttcttcactttcttgttaggaacccaatttgatatttcacagataattgattggcgtgatactatgagtgatgaacttttgggca |
110 |
Q |
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| T |
36193066 |
ttattctgtagagcgtttttcagtttccagtgaggaacccaatttgatgtttcacagataattcattggcatgatattatgagtgatgaatttttgggca |
36192967 |
T |
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| Q |
111 |
gactgtgacagtgttaacaatatctgttatttgttataccagatgtagagtccatcttcactattatctgcaatcttgttacgaagactgagaattcaga |
210 |
Q |
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| T |
36192966 |
gactgtgactgtgtttacaatgtctgttatttgttataccagatgtagagtccatcttcactattatctgcaatcttgttacgaagactgagaatccaga |
36192867 |
T |
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| Q |
211 |
tgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaagatgtaatattacatcctacct |
310 |
Q |
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| T |
36192866 |
tgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaaaatgtaatattacatcctactt |
36192767 |
T |
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| Q |
311 |
ggtttt--------gaaaatgcttgccactgtgactacttattt |
346 |
Q |
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| T |
36192766 |
ggttttgaaattttgaaaatgcttgccactgtgactacttattt |
36192723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 5054429 - 5054766
Alignment:
| Q |
11 |
ttattctgtagagcgttcttcactttcttgttaggaacccaatttgatatttcacagataattgattggcgtgatactatgagtgatgaacttttgggca |
110 |
Q |
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| T |
5054429 |
ttattctgtagcgcgtttttcactt-ctagttaggaatccaatttgatgttccacagataattgattggcatggtaatacgagtgatgaaattttgggca |
5054527 |
T |
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| Q |
111 |
gactgtgacagtgttaacaatatctgttatttgttataccagatgtagagtccatcttcactattatctgcaatcttgttacgaagactgagaattcaga |
210 |
Q |
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|| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
5054528 |
gaatgtgac--tgtttacaatatctgttatttgttataccagatgtagagtccatcttcactattgtctgcaatcttgttacgaagactgagaatccaga |
5054625 |
T |
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| Q |
211 |
tgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaagatgtaatattacatcctacct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5054626 |
tgaagtcatggagattgtgaaagttataactgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaagatgtaatattacatcctactt |
5054725 |
T |
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| Q |
311 |
gg--------ttttgaaaatgcttgccactgtgactactta |
343 |
Q |
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|| ||||||||||||||||||||||||||||||| |
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| T |
5054726 |
ggttttgaaattttgaaaatgcttgccactgtgactactta |
5054766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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