View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15279_high_14 (Length: 349)

Name: NF15279_high_14
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15279_high_14
NF15279_high_14
[»] chr5 (2 HSPs)
chr5 (1-335)||(9102250-9102584)
chr5 (93-151)||(1554789-1554847)
[»] chr4 (4 HSPs)
chr4 (93-151)||(36280284-36280342)
chr4 (93-148)||(50091304-50091359)
chr4 (93-145)||(11942579-11942631)
chr4 (93-147)||(10065307-10065355)
[»] chr2 (5 HSPs)
chr2 (93-149)||(4639991-4640047)
chr2 (93-148)||(34099088-34099143)
chr2 (93-147)||(9483989-9484043)
chr2 (93-146)||(13467436-13467489)
chr2 (93-146)||(13464697-13464750)
[»] chr7 (2 HSPs)
chr7 (93-148)||(37587445-37587500)
chr7 (93-147)||(46135165-46135219)
[»] chr3 (3 HSPs)
chr3 (93-148)||(3861149-3861204)
chr3 (93-147)||(35188984-35189038)
chr3 (93-136)||(49019534-49019577)
[»] chr1 (2 HSPs)
chr1 (93-148)||(5242608-5242663)
chr1 (93-146)||(37306378-37306431)
[»] chr6 (2 HSPs)
chr6 (93-147)||(8001350-8001404)
chr6 (93-146)||(20473489-20473542)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 9102250 - 9102584
Alignment:
Q  1 tttgttatcgatatttctgtgctgaagatatggagaatcactagttgagtgttctgccaaaacaacctggaataaggatggaaaattactgctagagcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9102250 tttgttatcgatatttctgtgctgaagatatggagaatcactagttgagtgttctgccaaaacaacctggaataaggatggaaaattactgttagagcac 9102349  T
Q  101 ccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaaattctttttctttcaaaataaaaaggatggaaaattaccctctttgcaccaa 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102350 ccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaaattctttttctttcaaaataaaaaggatggaaaattaccctctttgcaccaa 9102449  T
Q  201 atctccaaggcaacgtaacatatacaaccaaggttgtcatacttgagagtctacatagacttgagggaaatccgtagactcgacttgtaagagtctacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102450 atctccaaggcaacgtaacatatacaaccaaggttgtcatactcgagagtctacatagacttgagggaaatccgtagactcgacttgtaagagtctacac 9102549  T
Q  301 aaacacacaccctcgcacaagacactttcttatga 335  Q
    |||||||||||||||||||||||||||||||||||    
T  9102550 aaacacacaccctcgcacaagacactttcttatga 9102584  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 1554789 - 1554847
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaaatt 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1554789 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaaatt 1554847  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 36280284 - 36280342
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaaatt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36280284 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaaatt 36280342  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 50091304 - 50091359
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaa 148  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  50091304 tagagcacctgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 50091359  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 11942631 - 11942579
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagc 145  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  11942631 tagatcacccgtttagtaagcgggacgtcttgagttcgactctcaacgagagc 11942579  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 10065307 - 10065355
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaa 147  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  10065307 tagagcacccgtttagtaagcgggaggtc------tcaactctcaatgagagcaa 10065355  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 4640047 - 4639991
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaaa 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4640047 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaaa 4639991  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 34099088 - 34099143
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaa 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34099088 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 34099143  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 9484043 - 9483989
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9484043 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaa 9483989  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 13467489 - 13467436
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagca 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13467489 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagca 13467436  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 13464750 - 13464697
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagca 146  Q
    ||||||||  ||||||||||||||||||||||| ||||||| | || |||||||    
T  13464750 tagagcacttgtttagtaagcgggaggtcttgaattcaacttttaacgagagca 13464697  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 37587500 - 37587445
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaa 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37587500 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 37587445  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 46135165 - 46135219
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46135165 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 46135219  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 3861204 - 3861149
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaa 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3861204 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 3861149  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 35188984 - 35189038
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35188984 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 35189038  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 49019577 - 49019534
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctc 136  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  49019577 tagagcacctgtttagtaagcgggaggtcttgagttcaactctc 49019534  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 5242608 - 5242663
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaaa 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5242608 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 5242663  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 37306378 - 37306431
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagca 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37306378 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 37306431  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 8001350 - 8001404
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagcaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8001350 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 8001404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 20473542 - 20473489
Alignment:
Q  93 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgagagca 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20473542 tagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 20473489  T

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