View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_16 (Length: 339)
Name: NF15279_high_16
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 34925348 - 34925041
Alignment:
| Q |
17 |
acatccaaaatttatatgttagacttcttataaagaatatttataggagtaggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925348 |
acatccaaaatttatatgttagacttcttataaagaatatttataggagtaggtgcttacataaatcattctaaatgctgtaactaaaattaaactatgt |
34925249 |
T |
|
| Q |
117 |
ttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925248 |
ttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttc |
34925149 |
T |
|
| Q |
217 |
ctatataacttctgcaatttgtctatgtttaaacttctgatttttaatcattctccagaattatattcatcaataaagtattcgtattgtgcaatctgtt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925148 |
ctatataacttctgcaatttgtctatgtttaaacttctggttttgaatcattctccagaattatattcatcaataaagtattcgtattgtgcaatctgtt |
34925049 |
T |
|
| Q |
317 |
tgtctctg |
324 |
Q |
| |
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||| |||| |
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| T |
34925048 |
tgtttctg |
34925041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 34935250 - 34934946
Alignment:
| Q |
17 |
acatccaaaatttatatgttagacttcttataaagaatatttataggagtaggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgt |
116 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||||||| |
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| T |
34935250 |
acatccaaaatctatatgttagacttcttatatagaatatttataggagtaggtgcttaaataaatcattctcaatgctgtgactaaaattaaactat-- |
34935153 |
T |
|
| Q |
117 |
ttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttc |
216 |
Q |
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|||||||||| | |||||| ||| ||||||||||||||||| || || ||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
34935152 |
-tagttttatcctaaagttgcgagcattagacacttgggagggagagaatcaagctctcgaatcttggtctatgtgtgtcttgttattctgtactatctc |
34935054 |
T |
|
| Q |
217 |
ctatataacttctgcaatttgtctatgtttaaacttctgatttttaatcattctccagaattatattcatcaataaagtattcgtattgtgcaatctgtt |
316 |
Q |
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|||||| ||| ||||||||||||||||| || ||||| |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34935053 |
ctatatgactactgcaatttgtctatgtgtagtattctggttttgaattattatccagaattatattcatcaataaagtattcgtattgtgcaatctgtt |
34934954 |
T |
|
| Q |
317 |
tgtctctg |
324 |
Q |
| |
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||| |||| |
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| T |
34934953 |
tgtttctg |
34934946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 34929710 - 34929408
Alignment:
| Q |
17 |
acatccaaaatttatatgttagacttcttataaagaatatttataggagtaggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgt |
116 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||| |||||||||||||||| |
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|
| T |
34929710 |
acatccaaaatctatatgtttgacttcttatatagaatatttataggagtaggtgcttaaataaatcattctcaattctgtgactaaaattaaactat-- |
34929613 |
T |
|
| Q |
117 |
ttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttc |
216 |
Q |
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|||||||||| | |||||| ||| ||||||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34929612 |
-tagttttatcctaaagttgcgagcattagacacttgggagggagagaatcaagctctcgaatcttggtctatgtgtgtcttgttattctgtactatttc |
34929514 |
T |
|
| Q |
217 |
ctatataacttctgcaatttgtctatgtttaaacttctgatttttaatcattctccagaattatattcatcaataaagtattcgtattgtgcaatctgtt |
316 |
Q |
| |
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|||||| ||| ||||||||||||||||| || ||||| |||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
34929513 |
ctatatgactactgcaatttgtctatgtgtagtattctggttttgaattattctccagaattattgtcatca--aaagtattcgtattgtgcaatctgtt |
34929416 |
T |
|
| Q |
317 |
tgtctctg |
324 |
Q |
| |
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||| |||| |
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|
| T |
34929415 |
tgtttctg |
34929408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 32683559 - 32683670
Alignment:
| Q |
109 |
aactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgt |
208 |
Q |
| |
|
||||||||| |||||||| | ||||||||||| |||||||||||||| | || |||||||| ||||||||| |||||| |||||| |||||| ||| |
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| T |
32683559 |
aactatgttctgttttatccttaagttgtgagttttagacacttgggaag-tg----ccaagctcgcaaatcttg-tctatgcgtgtctggttattatgt |
32683652 |
T |
|
| Q |
209 |
actatttcctatataact |
226 |
Q |
| |
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||| ||||||||||||| |
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| T |
32683653 |
actgattcctatataact |
32683670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 32685269 - 32685380
Alignment:
| Q |
109 |
aactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgt |
208 |
Q |
| |
|
||||||||| |||||||| | ||||||||||| |||||||||||||| | || |||||||| ||||||||| |||||| |||||| |||||| ||| |
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| T |
32685269 |
aactatgttctgttttatccttaagttgtgagttttagacacttgggaag-tg----ccaagctcgcaaatcttg-tctatgcgtgtctggttattatgt |
32685362 |
T |
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| Q |
209 |
actatttcctatataact |
226 |
Q |
| |
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||| ||||||||||||| |
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| T |
32685363 |
actgattcctatataact |
32685380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 28699345 - 28699374
Alignment:
| Q |
194 |
gtcttgttattctgtactatttcctatata |
223 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28699345 |
gtcttgttattctgtactatttcctatata |
28699374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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