View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_18 (Length: 330)
Name: NF15279_high_18
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 40718063 - 40718388
Alignment:
| Q |
5 |
tgtccaataatatggatacttccattttcgggatccccctctccacaccattgtcgtttcttaatcatccataaatcataccaatgagatgaatctttcc |
104 |
Q |
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| T |
40718063 |
tgtccaagagtatggatacttccattttcgggatccccccctccacaccattgtcgtttcttaatcatccataaatcataccaatgagatgaatctttcc |
40718162 |
T |
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| Q |
105 |
taatgtaatttttcctaacttttatttattgtctttttgtgttttactataattaaagcaataaataaaatgcatcggttcttgaaagctagccatagca |
204 |
Q |
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| T |
40718163 |
taatgtaatttttcctaacttttatttattgtctttttgtgttttactataattaaagcaataaataaaatgcatcggttcttgaaagctagccatagca |
40718262 |
T |
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| Q |
205 |
tacctcatccaagttcgtttgataaagcaaaaagcaccaagatttggaacaaaaagaaaagaaataaggatacggccatataatgattaaacatctgtta |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40718263 |
tacctcatccaagttcgtttgataaagcaaaaagcaccaagatttggaacaaaaagaaaagaaataaggatacggccatataatgattaaacatttgtta |
40718362 |
T |
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| Q |
305 |
tataactaagtgtatacattaattat |
330 |
Q |
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| T |
40718363 |
tataactaagtgtatacattaattat |
40718388 |
T |
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