View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15279_high_2 (Length: 636)

Name: NF15279_high_2
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15279_high_2
NF15279_high_2
[»] chr5 (3 HSPs)
chr5 (116-619)||(1985144-1985659)
chr5 (1-52)||(1985029-1985080)
chr5 (289-356)||(23151234-23151301)
[»] chr2 (2 HSPs)
chr2 (192-575)||(44657118-44657509)
chr2 (189-274)||(4244431-4244516)
[»] chr3 (2 HSPs)
chr3 (290-467)||(40851919-40852098)
chr3 (191-279)||(40851602-40851690)
[»] chr1 (6 HSPs)
chr1 (187-244)||(24439278-24439334)
chr1 (188-387)||(48097160-48097365)
chr1 (321-357)||(27466774-27466810)
chr1 (194-251)||(6352118-6352174)
chr1 (289-353)||(6352477-6352541)
chr1 (461-509)||(6352651-6352699)
[»] scaffold0996 (1 HSPs)
scaffold0996 (187-344)||(1490-1652)
[»] chr7 (6 HSPs)
chr7 (457-504)||(31802280-31802327)
chr7 (463-510)||(513661-513708)
chr7 (513-576)||(34913157-34913220)
chr7 (289-356)||(41147719-41147786)
chr7 (289-357)||(513816-513884)
chr7 (175-274)||(43970094-43970193)
[»] scaffold0067 (1 HSPs)
scaffold0067 (289-356)||(11033-11100)
[»] chr4 (2 HSPs)
chr4 (289-356)||(32499511-32499578)
chr4 (187-274)||(54421351-54421438)
[»] scaffold0007 (1 HSPs)
scaffold0007 (321-355)||(188461-188495)


Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 116 - 619
Target Start/End: Original strand, 1985144 - 1985659
Alignment:
Q  116 cactggctattagatgtaccgtaggatagggtttaaagtgtacgaagatannnnnnnnn--agcaaa-gacaacattaattcatttcattcataa---tc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           |||||| |||||||||||||||||||||||||||   ||    
T  1985144 cactggctattagatgtaccgtaggatagggtttaaagtgtacgaagatattattttttttagcaaaagacaacattaattcatttcattcataataatc 1985243  T
Q  210 aacgaatacaaaagtagttggcacataattgaaaatatggggctaggatgagataaggatgctctggctgtgcaatgagctattagcttgcctccgaaca 309  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1985244 aacgaatacaaaagtagttggcacataattgaaaatatggggttaggatgagataaggatgctctggctgtgcaatgagctattagcttgcctccgaaca 1985343  T
Q  310 tgcggcattaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagaggaacctttgtgaaacaaatagcat 409  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1985344 tgcggcactaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagaggaacctttgtggaacaaatagcat 1985443  T
Q  410 atgatagagatttgcaatccgtttcaaacaaaagagtgggcattacg--tgatatggccactttgatagcttccaataagcctatggtttcagcttctag 507  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  1985444 atgatagagatttgcaatccgtttcaaacaaagcagtgggcattacgtttgatatggccactttgatagcttccaataagcctataatttcagcttctag 1985543  T
Q  508 gact----ctgatgagtgaacataatatgattttccaagtaataatagccatgtagagtctctaaaacacatttcaaaatacttttaagtgataggtctc 603  Q
    ||||    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1985544 gactgtgactgatgagtgaacataatatgattttccaagtaataatagtcatgaagagtctctaaaacacatttcaaaatacttttaagtgataggtctc 1985643  T
Q  604 tggcctaactactacc 619  Q
    | ||||||||||||||    
T  1985644 tagcctaactactacc 1985659  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1985029 - 1985080
Alignment:
Q  1 atatattcaagaacgaacacacacacataatgcacatattcatgttaatatg 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1985029 atatattcaagaacgaacacacacacataatgcacatattcatgttaatatg 1985080  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 23151301 - 23151234
Alignment:
Q  289 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattg 356  Q
    ||||| |||||||||| ||||| || || |  |||||||||| ||| |||||||||||||||||||||    
T  23151301 ctatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattg 23151234  T

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Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 192 - 575
Target Start/End: Complemental strand, 44657509 - 44657118
Alignment:
Q  192 ttcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatggggctaggatgagataaggatgctctggctgtgcaatgagc-- 289  Q
    ||||||||||| ||||||||| ||| ||||  ||||||| |||| ||||||| | |||| ||| ||||||||||||||||||| | | | ||||||        
T  44657509 ttcatttcatttataatcaacaaatgcaaat-tagttggtacatcattgaaattttggg-ctatgatgagataaggatgctctagttatacaatgaataa 44657412  T
Q  290 ---tattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagagg 386  Q
       |||||| || ||||| ||||||||  | || |||||||| ||||||||||||||||||| ||||||||| ||| |  |||||||||||||||||| |    
T  44657411 ctatattagtttacctccaaacatgcgatactacaaagtcggatctattaagtaagagacttttacattgaaagacgagatctccaaattcatttagaag 44657312  T
Q  387 aacctttgtgaaacaaatagcatatgatagagatttgcaatccgtttcaaacaaaagagtgggcattacg--tgatatggccactttgatagcttccaat 484  Q
    || ||||||| |||||||||||| |||||||||||||||||||||||||||||| | || | ||||| ||  ||||||| ||| ||||||| ||| ||||    
T  44657311 aatctttgtggaacaaatagcatctgatagagatttgcaatccgtttcaaacaatacagcgtgcattccgtttgatatgaccattttgataactttcaat 44657212  T
Q  485 aagcctatggtttcagcttctaggact----ctgatgagtgaacataatatgattttccaagtaataatagccatgtagagtctctaaaacacat 575  Q
    |||||||||||||||||||||||||||    |||||||||||| ||| | ||| |||||||| |||||||| |  |||||| |||||||||||||    
T  44657211 aagcctatggtttcagcttctaggactgtgactgatgagtgaaaatactctga-tttccaagcaataatagtctcgtagagcctctaaaacacat 44657118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 4244516 - 4244431
Alignment:
Q  189 taattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatat-ggggctaggatgagataaggatgctct 274  Q
    ||||||||||||||||||| ||| || ||| |||| || ||| |||||||||||||| |  | ||||||||||||||| ||||||||    
T  4244516 taattcatttcattcataaacaaagagtac-aaagaagatggtacataattgaaaatgtaagagctaggatgagataaagatgctct 4244431  T

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Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 290 - 467
Target Start/End: Original strand, 40851919 - 40852098
Alignment:
Q  290 tattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatttagaggaac 389  Q
    |||||| |||||| |||||||| | || || | |||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  40851919 tattagtttgcctacgaacatgagacactacatagtcaggtctattaaataagagacttctacattgaaagacaaggtctccaaattcatttagaggaac 40852018  T
Q  390 ctttgtgaaacaaatagcatatgatagagatttgcaatccgtttcaaacaaaagagtgggcattacg--tgatatggcca 467  Q
    ||||||| |||||||||||| || ||||||||||||||| ||||||||||||| |||| ||||| ||  |||||||||||    
T  40852019 ctttgtggaacaaatagcatctggtagagatttgcaatctgtttcaaacaaaatagtgtgcattccgtttgatatggcca 40852098  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 40851602 - 40851690
Alignment:
Q  191 attcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatgggg-ctaggatgagataaggatgctctggctg 279  Q
    ||||||||| |||||||||||||||||| |||||||||||   ||||||||||| |||||| |||||||||||||| |||||||||||||    
T  40851602 attcatttcgttcataatcaacgaatac-aaagtagttggtcaataattgaaaacatggggactaggatgagataaagatgctctggctg 40851690  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 24439334 - 24439278
Alignment:
Q  187 attaattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaa 244  Q
    |||||||||||||||||||||||||||||||| |||||||||   |||||||||||||    
T  24439334 attaattcatttcattcataatcaacgaatac-aaagtagttaaaacataattgaaaa 24439278  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 188 - 387
Target Start/End: Original strand, 48097160 - 48097365
Alignment:
Q  188 ttaattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatg-gggctaggatgagataaggatgctctggctgtgcaatg 286  Q
    |||| |||||||||||||||||||| ||||| ||||||||||| |||| |||||||||| | ||||| |  ||| ||| |||||| || ||| | | |||    
T  48097160 ttaagtcatttcattcataatcaacaaatac-aaagtagttggtacattattgaaaatacgagggctggagtgatatatggatgccctagctattctatg 48097258  T
Q  287 ag------ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattgaaggacaatgtctccaaattcatt 380  Q
    ||      ||||| | | ||||||||||||||  || || |||||| |||||||| ||||||||| || ||||||| |  | ||  || |||||||||||    
T  48097259 agcaaaacctatttggtggcctccgaacatgcaacactacaaagtctggtctatttagtaagagatttttacattgtaaaataagatcaccaaattcatt 48097358  T
Q  381 tagagga 387  Q
    |||||||    
T  48097359 tagagga 48097365  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 27466810 - 27466774
Alignment:
Q  321 aaagtcgggtctattaagtaagagacttctacattga 357  Q
    |||||||||| ||||||||||||||||||||||||||    
T  27466810 aaagtcgggtttattaagtaagagacttctacattga 27466774  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 6352118 - 6352174
Alignment:
Q  194 catttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatgggg 251  Q
    ||||||||||||| ||||||||||| ||||| ||||| |||  |||||||||||||||    
T  6352118 catttcattcatactcaacgaatac-aaagttgttggtacaatattgaaaatatgggg 6352174  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 6352477 - 6352541
Alignment:
Q  289 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctaca 353  Q
    ||||| ||||||||||||| ||||| || || ||| ||||| ||  |||||||||||||||||||    
T  6352477 ctatttgcttgcctccgaatatgcgacactacaaaatcgggactggtaagtaagagacttctaca 6352541  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 509
Target Start/End: Original strand, 6352651 - 6352699
Alignment:
Q  461 atggccactttgatagcttccaataagcctatggtttcagcttctagga 509  Q
    ||||||| ||| ||||||||||| || ||||||||||| ||||||||||    
T  6352651 atggccatttttatagcttccaacaaacctatggtttcggcttctagga 6352699  T

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Target: scaffold0996 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 187 - 344
Target Start/End: Original strand, 1490 - 1652
Alignment:
Q  187 attaattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatgggg-ctaggatgagataaggatgctctggctgtgcaat 285  Q
    ||||| |||||||||||||||| || || |||||| ||||  || |||  ||| ||||||||||| ||||||||| ||||||| ||||| ||  | | ||    
T  1490 attaagtcatttcattcataattaaggagtacaaa-gtagaaggtacaacattaaaaatatgggggctaggatgacataaggaagctctagcaatactat 1588  T
Q  286 gagc-----tattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagag 344  Q
    ||||     ||||||||||||||||||||| || || || ||||||||||||||| || |||||    
T  1589 gagcaaccctattagcttgcctccgaacatacgacactacaaagtcgggtctattgagcaagag 1652  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 504
Target Start/End: Complemental strand, 31802327 - 31802280
Alignment:
Q  457 tgatatggccactttgatagcttccaataagcctatggtttcagcttc 504  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  31802327 tgatatggcctctttgatagcttccaacaagccgatggtttcagcttc 31802280  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 510
Target Start/End: Complemental strand, 513708 - 513661
Alignment:
Q  463 ggccactttgatagcttccaataagcctatggtttcagcttctaggac 510  Q
    |||| |||||||||||||||| ||||| |||||||||||||| |||||    
T  513708 ggcctctttgatagcttccaacaagccgatggtttcagcttccaggac 513661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 576
Target Start/End: Complemental strand, 34913220 - 34913157
Alignment:
Q  513 tgatgagtgaacataatatgattttccaagtaataatagccatgtagagtctctaaaacacatt 576  Q
    |||||||| || ||||| ||||||||||||||||||||| |  ||| | |||||||||||||||    
T  34913220 tgatgagtcaaaataatctgattttccaagtaataatagtctcgtacaatctctaaaacacatt 34913157  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 41147786 - 41147719
Alignment:
Q  289 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattg 356  Q
    ||||| |||||||||| ||||| || || |  |||||||||| ||| |||||||||||||||||||||    
T  41147786 ctatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattg 41147719  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 513884 - 513816
Alignment:
Q  289 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattga 357  Q
    |||||||||||||||| ||||| || || || ||||||||||||||| || ||||| ||  ||||||||    
T  513884 ctattagcttgcctccaaacatacgacactacaaagtcgggtctattgagcaagaggctcttacattga 513816  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 43970193 - 43970094
Alignment:
Q  175 agcaaagacaacattaattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatat-ggggctaggatgagataaggatgctc 273  Q
    ||||||| ||| |||||| |||||| ||||||||||| |  ||| ||||||| ||| |||| || |||||||| |||||||||||  |||||||| ||||    
T  43970193 agcaaaggcaagattaatgcatttcgttcataatcaaagggtac-aaagtagatggtacatcatagaaaatatgggggctaggattggataaggacgctc 43970095  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 11033 - 11100
Alignment:
Q  289 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattg 356  Q
    ||||| |||||||||| ||||| || || |  |||||||||| ||| |||||||||||||||||||||    
T  11033 ctatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattg 11100  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 32499578 - 32499511
Alignment:
Q  289 ctattagcttgcctccgaacatgcggcattaaaaagtcgggtctattaagtaagagacttctacattg 356  Q
    ||||| |||||||||| ||||| || || |  |||||||||| ||| |||||||||||||||||||||    
T  32499578 ctatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattg 32499511  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 54421351 - 54421438
Alignment:
Q  187 attaattcatttcattcataatcaacgaatacaaaagtagttggcacataattgaaaatatgggg-ctaggatgagataaggatgctct 274  Q
    |||||||||| |||| || |||||| || |||||| |||||||  |||| || |||||||||||| |||||||| |||||||| |||||    
T  54421351 attaattcatatcatccaaaatcaaagagtacaaa-gtagttgttacatgatagaaaatatgggggctaggatgtgataaggaagctct 54421438  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 355
Target Start/End: Original strand, 188461 - 188495
Alignment:
Q  321 aaagtcgggtctattaagtaagagacttctacatt 355  Q
    ||||||||||||| |||||||||||||||||||||    
T  188461 aaagtcgggtctaataagtaagagacttctacatt 188495  T

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