View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_24 (Length: 254)
Name: NF15279_high_24
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 42528723 - 42528485
Alignment:
| Q |
14 |
attattcttaaatttctagtttttatgagtgaaactcctatttctctctaacttctcttctccatctttatcattcgtaagtgacggtagttttgaatta |
113 |
Q |
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| T |
42528723 |
attattcttaaatttctagtttttaagagt---actcctatttgtctctgacttctcttctccatctttatcattcgtaagtgactgtggttttgaatta |
42528627 |
T |
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| Q |
114 |
tttattgacctgaaatcacccattttaca-nnnnnnnncatcatcttttaatctaaataaatggtttctaacatattgatatagaatgnnnnnnncctca |
212 |
Q |
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||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
42528626 |
tttgttggtctgaaatcactcattttacatttttttttcatcatcttttaatctaaataaatggtttctaacatattgatatataatgttttttttctca |
42528527 |
T |
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| Q |
213 |
cgtannnnnnncttcatgattttgtcgtttgagtgtgaagtt |
254 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
42528526 |
cgtatttttgttttcatgattttgtcgtttgagtgtgaagtt |
42528485 |
T |
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