View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_3 (Length: 633)
Name: NF15279_high_3
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 15 - 613
Target Start/End: Complemental strand, 27795252 - 27794654
Alignment:
| Q |
15 |
tagggagttggtggaaagctatggacctcataattggaacgccatagctgaaaatctccgaggaagatcaggtaaaattaatgatcatatacttaattat |
114 |
Q |
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| T |
27795252 |
tagggagttggtggaaagctatggacctcataattggaacgccatagctgaaaatctccgaggaagatcaggtaaaattaatgatcatatacttaattat |
27795153 |
T |
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| Q |
115 |
tgtaattattcattcaactaaaaataacaaattcaagnnnnnnnnn--ttcaacaaacatggagtatgtatacaagaaaatgatagcatacttaactctt |
212 |
Q |
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| T |
27795152 |
tgtgattattcattcaactaaaaataacaaattcaagaaaaaaaatatttcaacaaccatggagtatgtatacaagaaaatgatagcatacttaactctt |
27795053 |
T |
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| Q |
213 |
aggtagagatttgtaatagttttgtataatataaatacgttttattttatacatataatagcttcatattagaaaaattctgttgcaattacacacacag |
312 |
Q |
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| T |
27795052 |
aggtagagatttttaatagttttgtataatataaatacgttttattttatacatataatagcttcatattagaaaaattatgttgcaattacacacacag |
27794953 |
T |
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| Q |
313 |
ctagatcataatttgaggaaattaggaactggttgtgtaatataaattttttattttgaaaaatatttgtgtgatataagttatttagccagattttatc |
412 |
Q |
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| T |
27794952 |
ctagatcataatttcaggaaattaggaactggttgtgtaatataagttttttattttgaaaaatatttgtgtgatataagttaattagccagattttatc |
27794853 |
T |
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| Q |
413 |
tgtgtattggtatatacttactaattaatttattaaatttggtcaaaaaattaattgattaaatatttttctaggg-ttgattaaaatatcaagaaatat |
511 |
Q |
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| T |
27794852 |
tgtgtattggtatataattactaattaatttattaaatttggtcaaaaaattaattgattaaatatttttctagggtttgattaaaatatcacgaaatat |
27794753 |
T |
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| Q |
512 |
aaatttttactgtatatacaattgcaaaataatttttaagaagcataacaagtccaagtaaataatgctttattttgttttcacatgcttttgattgcac |
611 |
Q |
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| T |
27794752 |
aaatttttactgtatatacaattgcaaaataatttgtaagaagcataacaagtgcaagta---aatgctttattttgttttcacatgcttttgattgcac |
27794656 |
T |
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