View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15279_high_36 (Length: 210)

Name: NF15279_high_36
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15279_high_36
NF15279_high_36
[»] chr6 (3 HSPs)
chr6 (18-92)||(7094602-7094676)
chr6 (18-92)||(8801618-8801693)
chr6 (18-90)||(3014015-3014087)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 7094676 - 7094602
Alignment:
Q  18 atgaattgggaagatgagaccaatgtggctaggaggaaaaaatagagaatggaagagaagaaggtatatgaaccc 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094676 atgaattgggaagatgagaccaatgtggctaggaggaaaaaatagagaatggaagagaagaaggtatatgaaccc 7094602  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 8801618 - 8801693
Alignment:
Q  18 atgaattgggaagatgagaccaatgtggctaggagg-aaaaaatagagaatggaagagaagaaggtatatgaaccc 92  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8801618 atgaattgggaagatgagaccaatgtggctaggaggaaaaaaatagagaatggaagagaagaaggtatatgaaccc 8801693  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 3014087 - 3014015
Alignment:
Q  18 atgaattgggaagatgagaccaatgtggctaggaggaaaaaatagagaatggaagagaagaaggtatatgaac 90  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3014087 atgaatggggaagatgagaccaatgtggctaggagcaaaaaatagagaatggaagagaagaaggtatatgaac 3014015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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