View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_4 (Length: 628)
Name: NF15279_high_4
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 16 - 597
Target Start/End: Complemental strand, 32203789 - 32203208
Alignment:
| Q |
16 |
cacttttgttgtatcagagatgtacttagcacaagattccattcctatcttatgaatgaggtcagggattatttccatcatcttcatcatcacggacgag |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203789 |
cacttttgttgtatcagagatgttcttagcacaagattccattcctatcttatgaatgaggtcagggattatttccatcatcttcatcatcacggacgag |
32203690 |
T |
|
| Q |
116 |
tttaacaccattgtacttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttattaacatttacatgaata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32203689 |
tttaacaccattgtacttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttatttacatttacatgaata |
32203590 |
T |
|
| Q |
216 |
cctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgcttttgcattgcagggccggccacact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32203589 |
cctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgcttttgcattgcaggaccggccacact |
32203490 |
T |
|
| Q |
316 |
cgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtactttattgatat |
415 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203489 |
cgagagactgcttgatgtcatgttcagcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtactttattgatat |
32203390 |
T |
|
| Q |
416 |
gaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataaatgataaatcagtttcctacaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203389 |
gaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataaatgataaatcagtttcctacaa |
32203290 |
T |
|
| Q |
516 |
acagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggttaatt |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203289 |
acagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggttaatt |
32203208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 16 - 597
Target Start/End: Original strand, 35566204 - 35566784
Alignment:
| Q |
16 |
cacttttgttgtatcagagatgtacttagcacaagattccattcctatcttatgaatgaggtcagggattatttccatcatcttcatcatcacggacgag |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35566204 |
cacttttgttgtatcagagatgttcttagcacaagattccattcctatcttatgaatgaggtcagggattatttccatcatcttcatcatcacggacgag |
35566303 |
T |
|
| Q |
116 |
tttaacaccattgtacttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttattaacatttacatgaata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
35566304 |
tttaacaccattgtacttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttatttacatttacatgaata |
35566403 |
T |
|
| Q |
216 |
cctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgcttttgcattgcagggccggccacact |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35566404 |
cctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgcttttgcatt-cagggccggccacact |
35566502 |
T |
|
| Q |
316 |
cgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtactttattgatat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35566503 |
cgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtactttattgatat |
35566602 |
T |
|
| Q |
416 |
gaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataaatgataaatcagtttcctacaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35566603 |
gaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataaatgataaatcagtttcctacga |
35566702 |
T |
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| Q |
516 |
acagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggttaatt |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35566703 |
acagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggttaatt |
35566784 |
T |
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