View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_7 (Length: 499)
Name: NF15279_high_7
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 454
Target Start/End: Complemental strand, 36588950 - 36588509
Alignment:
| Q |
14 |
attatggaattgcattttgtcaaaagaggggttcaaaccctgtaaatggcgcattcaaattctaaaatgcaaatgtataaaaatatttatacnnnnnnnt |
113 |
Q |
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| T |
36588950 |
attatggaattgcattttgtcacaagaggggttcaaaccctgtaaatggcgcattcaaattctaaaatgcaaatgcataaaagtatttataaaaaaa--- |
36588854 |
T |
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| Q |
114 |
aaacagttagctttggttgaatcgtgactaattctctcctttttaaatgaaagttaaatatgcttcagattataaaatttaaaaatcaagacacattttt |
213 |
Q |
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| T |
36588853 |
aaacagttagctttggttgaatcgagactaattttctcctttctaaatgaaagttaaatatgcttcagattataaaatttaaaaatcaagacacattttt |
36588754 |
T |
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| Q |
214 |
gagaaagcgaggaacgcgcaaggggcgtgtgaggggtggg---------ccctttcaaaaagcctaaagagtaccagcttcatgttgggccgagcccaat |
304 |
Q |
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| T |
36588753 |
gagaaagcgagaaacgcgcaaggggtgtgtgaggggtgggtgggggagcccctttcaaaatggccaaagagtaccagcttcatgttgggccgagcccaat |
36588654 |
T |
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| Q |
305 |
tctaaattatatagggataaaactnnnnnnnnnnnnnnttgaataaatgaatatatagagggtgaagatagatctaactctttaagattatttatttttt |
404 |
Q |
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| T |
36588653 |
tctaaattatatagggacaaaactaaaaaaagaaaaa--tgaataaatga--atatagagggtgaagatagatctaactc-ttaagattatttatttttt |
36588559 |
T |
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| Q |
405 |
cactttaaattagatctcatagttaacgacactgagataagtatttgtgt |
454 |
Q |
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| T |
36588558 |
cactttaaattagatctcatagttaacgacactgagataagtatttgtgt |
36588509 |
T |
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