View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_high_9 (Length: 460)
Name: NF15279_high_9
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 7705287 - 7704860
Alignment:
| Q |
18 |
actattttacttcctgcttatcttgtgctcatactatgaatttgttttgactaaaatgtttaatctcaactaattttgaagtttattgtgtgcaacaaga |
117 |
Q |
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| T |
7705287 |
actattttacttcctgcttatcttgtgctcatactatgaatttgttttgactaaaatatttaatctcaactaattttgaagtttattgtgtgcaacaaga |
7705188 |
T |
|
| Q |
118 |
atgctagaaattcc-aaagataacaaagaaagcnnnnnnnnnnnnnnnntggcactgttcagtaagtaaaaagttctgagaaaatgttcaatgatgttgt |
216 |
Q |
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| T |
7705187 |
atgctagaaactcctaaagataacaaagaaagcaaaaagaaaaaaaaaatggcactgttcagtaagtaaaaagttctgagaaaatgttcaatgatgttgt |
7705088 |
T |
|
| Q |
217 |
ccagcaaagtaactatagataagcaaaatttcaaaaaagaattcatcatcgaattcagatgaaatagaatgaaaggaaactaaaacctttgaacagggga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7705087 |
ccagcaaagtaactatagataagcaaaatttcaaaaaagaattcatcatcgaattcagatgaaatagaatgaaaggaaactaaaacctttgaacagggga |
7704988 |
T |
|
| Q |
317 |
atagaatgaacaaaacctaattcgtaacaatatcgtcgtaggatacttagtgatcatgagacatccgtaattaaatcaacaattcaacgtacccatccca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7704987 |
atagaatgaacaaaacctaattcgtaacaatatcgtcgtaggatacttagggatcatgagacatccctaattaaatcaacaattcaacgtacccatccca |
7704888 |
T |
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| Q |
417 |
ttacattaatgaattaaactctattcat |
444 |
Q |
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| T |
7704887 |
ttacattaatgaattaaactctattcat |
7704860 |
T |
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