View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_low_10 (Length: 450)
Name: NF15279_low_10
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 59 - 433
Target Start/End: Complemental strand, 48533424 - 48533039
Alignment:
| Q |
59 |
cttctttagcctcgcaagagacctctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggc |
158 |
Q |
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| T |
48533424 |
cttctttagcctcgcaagagacctctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggc |
48533325 |
T |
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| Q |
159 |
ttatgcttattattcattgtggtatcttacatcatcaactccgcagca----ccagcctagcctagttctgttgttgttctttaggctgtttctaaaagc |
254 |
Q |
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| T |
48533324 |
ttatgcttattattcattgtggtatcttac---atcaactccgcagcaccagccagcctagcctagttctgttgttgttctttaggctgtttctaaaagc |
48533228 |
T |
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| Q |
255 |
attctagtatagtatatg-ttttgttattgttggtttagttcatgg---------aacaaacttaattcatttctatttgatatttttctcaattcattt |
344 |
Q |
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| T |
48533227 |
attctagtatagtatatgtttttgttattgttggtttggttcatggaacaaacaaaacaaacttaattcatttctatttgatatttttctcaattcattt |
48533128 |
T |
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| Q |
345 |
ctattggagaaatccatcttatgtattaaatgcaattcacggggctttggcatcaactcaatcaaacttttgtttctggtcgttgttct |
433 |
Q |
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| T |
48533127 |
ctattggagaaatccatcttatatattaaatgcaattcacggggctttggcatcaactcaatcaaacttttgtttctggtcgttgttct |
48533039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 48536336 - 48536225
Alignment:
| Q |
79 |
acctctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgt |
178 |
Q |
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| T |
48536336 |
acctctctcacatagatcagatcaacactcgtagattccgggtcctcaggctattggg-tatcttacatctctatgtggcttatgtttattattcactgt |
48536238 |
T |
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| Q |
179 |
ggtatcttacatc |
191 |
Q |
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|||| |||||||| |
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| T |
48536237 |
ggtaacttacatc |
48536225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 48533494 - 48533439
Alignment:
| Q |
10 |
attattctgatcgcaatgtgacaattgcggtatcttctttagcaatttgcttcttt |
65 |
Q |
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| T |
48533494 |
attattctgatcgcaatgtgacaattgcggtatattctttagcaatttgcttcttt |
48533439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 306
Target Start/End: Complemental strand, 48536193 - 48536082
Alignment:
| Q |
202 |
cagcaccagcctagcctagttctgttgtt-----gttcttt-----aggctgtttctaaaagcattctagtatagtatatgttttgttattgttggttta |
291 |
Q |
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| T |
48536193 |
cagcaccagcctagcctagttctgttgttacgttgttctttggtttaggctgtttataaaagcattccagtatag--tatgtcttgttattgttgg-ttg |
48536097 |
T |
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| Q |
292 |
gttcatggaacaaac |
306 |
Q |
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| T |
48536096 |
gttcatggaacaaac |
48536082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 433
Target Start/End: Complemental strand, 48535940 - 48535881
Alignment:
| Q |
372 |
aaatgcaattcacggggctttggcatcaactcaatcaaacttttgtttctggtcgttgttct |
433 |
Q |
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|||||||||||||||||||| |||||| ||||||| |||| |||||| |||| |||||||| |
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| T |
48535940 |
aaatgcaattcacggggcttgggcatcgactcaataaaac--ttgtttttggtggttgttct |
48535881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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