View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_low_13 (Length: 387)
Name: NF15279_low_13
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_13 |
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| [»] scaffold0519 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 23629232 - 23629444
Alignment:
| Q |
1 |
gacaaacagggatattatatcaaatcattgtttagcaaaagagtagaattgagttggttcaacgcagaagctttaaatccgagcttcagaccaactcacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23629232 |
gacaaacagggatattatatcaaatcattgtttagcaaaagagtagaattgagttggttcaacgcagaagctttaaatccgagcttcaaaccaactcacg |
23629331 |
T |
|
| Q |
101 |
tttgggctccataaccaatttgcctttttgaaagccaaacataaattttattatgaaatagcttttcattaccgtaaacgtgagttttgatgcactcacc |
200 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
23629332 |
tttgggctccataatcaatttacctttttgaaagccaaacataaattttattatgaaatagcttttcattgccgtaaacgtgagttttggtgcactcacc |
23629431 |
T |
|
| Q |
201 |
gtgcaaccaaaca |
213 |
Q |
| |
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||||||||||||| |
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| T |
23629432 |
gtgcaaccaaaca |
23629444 |
T |
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Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 7178368 - 7178150
Alignment:
| Q |
1 |
gacaaacagggatattatatcaaatcattgtttagcaaaagagtagaattgagttggttcaacgcagaagctttaaatccgagcttcagaccaactcacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
7178368 |
gacaaacagggatattatatcaaatcattgtttagcaaaagagtagaattgagttggttcaacgcataagctttaaatccgagcttcaaaccaactcacg |
7178269 |
T |
|
| Q |
101 |
tttgggctccataaccaatttgcctttttgaaagccaaacataaattttattatgaaatagcttttcattaccgtaaacgtgagttttgatgcactcacc |
200 |
Q |
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| T |
7178268 |
tttgggctccataatcaatttgcctttttaaaagccaaacaaaaaatttattatgaaatagcttttcattgccgtaaacgtgagttttggtgcactcacc |
7178169 |
T |
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| Q |
201 |
gtgcaaccaaacaggtact |
219 |
Q |
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||||||||||||||||||| |
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| T |
7178168 |
gtgcaaccaaacaggtact |
7178150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 25748375 - 25748554
Alignment:
| Q |
43 |
gtagaattgagttggttcaacgcagaagctttaaatccgagcttcagaccaactcacgtttgggctccataaccaatttgcctttttgaaagccaaacat |
142 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| |
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| T |
25748375 |
gtagaattgagttggttcaacgcagaagctttaaatctgagcttcagaccaactcacgtttggactccataatcaattttcctttttgaaagccaaacat |
25748474 |
T |
|
| Q |
143 |
aaattttattatgaaatagcttttcattaccgtaaacgtgagttttgatgcactcaccgtgcaaccaaacaggtactaag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
25748475 |
aaattttattatgaaatagcttttcattaccgtaaaggtgagttttggtgcactcaccgtgcaaccaaacagatactaag |
25748554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 8040935 - 8040725
Alignment:
| Q |
2 |
acaaacagggatattatatcaaatcattgtttagcaaaagagtagaattgagttggttcaacgcagaagctttaaatccgagcttcagaccaactcacgt |
101 |
Q |
| |
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||||||||||||||||||| |||| |||||||| ||||||||||||||||||| | | |||| |||||| |||| |||||||| | ||| |||| |
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| T |
8040935 |
acaaacagggatattatataaaataattgtttaataaaagagtagaattgagtttggttgccgcataagcttcaaatgtgagcttcaagctaacgtacgt |
8040836 |
T |
|
| Q |
102 |
ttgggctccataaccaatttgcctttttgaaagccaaacataaattttattatgaaatagcttttcattaccgtaaacgtgagttttgatgcactcaccg |
201 |
Q |
| |
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|| |||| || || |||||||| | ||| |||| |||| || |||| | || || ||| ||||||| |||||||||||||||| | ||| ||||| |
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| T |
8040835 |
ttaggctgcagaatcaatttgcttattttaaagtcaaatattttttttttcat-aatcagcgtttcattgtagtaaacgtgagttttggtacacccaccg |
8040737 |
T |
|
| Q |
202 |
tgcaaccaaaca |
213 |
Q |
| |
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|||||||||||| |
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| T |
8040736 |
tgcaaccaaaca |
8040725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 21255374 - 21255553
Alignment:
| Q |
43 |
gtagaattgagttggttcaacgcagaagctttaaatccgagcttcagaccaactcacgtttgggctccataaccaatttgcctttttgaaagccaaacat |
142 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| |
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| T |
21255374 |
gtagaattgaattggttcaacgcagaagctttaaatctgagcttcagaccaactcacgtttggactccataatcaattttcctttttgaaagccaaacat |
21255473 |
T |
|
| Q |
143 |
aaattttattatgaaatagcttttcattaccgtaaacgtgagttttgatgcactcaccgtgcaaccaaacaggtactaag |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
21255474 |
aaattttattatgaaatagcttttcattgccgtaaacgtgagttttggtgcactcaccgtgcaaccaaacagatactaag |
21255553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0519 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0519
Description:
Target: scaffold0519; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 219 - 371
Target Start/End: Original strand, 2624 - 2776
Alignment:
| Q |
219 |
taagcttttatcaaggggttgatttaaatctcatgtgaaggggtttattttttaagttcataaacggtgtattaatcaaccgcaagggtgcctaagtgtt |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| || || |
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| T |
2624 |
taagcttttatcaaggggttgatttaaatctcatgtgaaggggtttatttttaaagttcataaacggtgtattaatcaaccgcaaaggtgtctaggtttt |
2723 |
T |
|
| Q |
319 |
ataggtttttaagtaccttagttgtgttttgacactttgtcgacattgagttt |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2724 |
ataggtttttaagtaccttagttgtgttttgacactttgtcgacattgagttt |
2776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 53914567 - 53914456
Alignment:
| Q |
1 |
gacaaacagggatattatatcaaatc---attgtttagcaaaagagtagaattgagttggttcaacgcagaagctttaaatccgagcttcagaccaactc |
97 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||||||||||| |
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| T |
53914567 |
gacaaatagggatatcatatcaaatactaattgtttagcaaaagagtagaattgagttggttcaacgcataagcttcaaaactgagcttcagaccaactc |
53914468 |
T |
|
| Q |
98 |
acgtttgggctc |
109 |
Q |
| |
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|||||||||||| |
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| T |
53914467 |
acgtttgggctc |
53914456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 8753235 - 8753160
Alignment:
| Q |
82 |
agcttcagaccaactcacgtttgggctccataaccaatttgcctttttgaaagccaaacataaattttattatgaa |
157 |
Q |
| |
|
|||||||||| ||||||||||| | ||||| || |||||| |||||| |||| |||||||||||||||||||||| |
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| T |
8753235 |
agcttcagactaactcacgtttagactccagaatcaatttatctttttaaaagtcaaacataaattttattatgaa |
8753160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 19600672 - 19600754
Alignment:
| Q |
131 |
aaagccaaacataaattttattatgaaatagcttttcattaccgtaaacgtgagttttgatgcactcaccgtgcaaccaaaca |
213 |
Q |
| |
|
||||||||||| ||| ||| | |||||||||| ||||||| |||||||||||||||| ||||| ||| |||||||||||| |
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| T |
19600672 |
aaagccaaacaaaaaatttctcatgaaatagcgtttcattgttgtaaacgtgagttttggtgcacccactatgcaaccaaaca |
19600754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 19599952 - 19600039
Alignment:
| Q |
1 |
gacaaacagggatattatatcaaatcattgtttagcaaaagagtagaattgagttggttcaacgcagaagctttaaatccgagcttca |
88 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| ||||||||||| |||||| | | ||||||||||| |||| |||||||| |
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|
| T |
19599952 |
gacaaacagggatattatataaaataattgtttaataaaagagtagatatgagttaggttgccgcagaagcttcaaatgtgagcttca |
19600039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 36827128 - 36827234
Alignment:
| Q |
116 |
caatttgcctttttgaaagccaaacataaattttattatgaaatagcttttcattaccgtaaacgtgagttttgatgcactcaccgtgcaaccaaacagg |
215 |
Q |
| |
|
|||||||||| ||| ||||||||||| || |||| | |||||||||| ||||||| |||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
36827128 |
caatttgcctattttaaagccaaacaaaatttttctcatgaaatagcgtttcattgttgtaaacgtgagttttggtgcacccaccgtgcaactaaacata |
36827227 |
T |
|
| Q |
216 |
tactaag |
222 |
Q |
| |
|
||||||| |
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| T |
36827228 |
tactaag |
36827234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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