View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15279_low_16 (Length: 341)

Name: NF15279_low_16
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15279_low_16
NF15279_low_16
[»] chr8 (2 HSPs)
chr8 (24-76)||(19711929-19711981)
chr8 (18-69)||(3810709-3810760)
[»] chr2 (1 HSPs)
chr2 (21-76)||(40606914-40606969)
[»] chr1 (2 HSPs)
chr1 (18-75)||(14099558-14099615)
chr1 (18-65)||(12259185-12259232)
[»] chr4 (2 HSPs)
chr4 (18-76)||(54734642-54734700)
chr4 (102-130)||(54734710-54734738)
[»] chr7 (4 HSPs)
chr7 (18-69)||(26502589-26502640)
chr7 (18-69)||(26590074-26590125)
chr7 (18-76)||(19365554-19365612)
chr7 (18-76)||(42148735-42148793)
[»] chr3 (1 HSPs)
chr3 (18-76)||(33461247-33461305)


Alignment Details
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 19711981 - 19711929
Alignment:
Q  24 ttataccttcacccaaatatttgacataaactaccaaatttaccctatatata 76  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||||||    
T  19711981 ttataccttcaccccaacatttgacataaactaccaaatttaccctttatata 19711929  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 3810709 - 3810760
Alignment:
Q  18 ctacatttataccttcacccaaatatttgacataaactaccaaatttaccct 69  Q
    ||||||||||||||| |||| || |||||||| ||| |||||||||||||||    
T  3810709 ctacatttataccttgaccccaacatttgacacaaagtaccaaatttaccct 3810760  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 40606969 - 40606914
Alignment:
Q  21 catttataccttcacccaaatatttgacataaactaccaaatttaccctatatata 76  Q
    ||||||||||||||||| || |||||||| ||||||||||||||||||| ||||||    
T  40606969 catttataccttcaccccaacatttgacacaaactaccaaatttaccctttatata 40606914  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 14099615 - 14099558
Alignment:
Q  18 ctacatttataccttcacccaaatatttgacataaactaccaaatttaccctatatat 75  Q
    |||||||||||||||||||| ||  ||||| ||||||||||||||||||||| |||||    
T  14099615 ctacatttataccttcaccccaacttttgaaataaactaccaaatttaccctttatat 14099558  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 12259232 - 12259185
Alignment:
Q  18 ctacatttataccttcacccaaatatttgacataaactaccaaattta 65  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||||    
T  12259232 ctacatttataccttgaccccaatatttgacataaactatcaaattta 12259185  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 54734642 - 54734700
Alignment:
Q  18 ctacatttataccttcacccaaatatttgacataaactaccaaatttaccctatatata 76  Q
    ||||| |||||||||||||| || ||| |||| ||||||||||||||||||| ||||||    
T  54734642 ctacaattataccttcaccctaacattagacacaaactaccaaatttaccctttatata 54734700  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 54734710 - 54734738
Alignment:
Q  102 cacaatcaccattcacttgttcaccccca 130  Q
    |||||||||||||||||||||||||||||    
T  54734710 cacaatcaccattcacttgttcaccccca 54734738  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 26502589 - 26502640
Alignment:
Q  18 ctacatttataccttcacccaaatatttgacataaactaccaaatttaccct 69  Q
    ||||||||||||||| |||| || |||||||| |||||||| ||||||||||    
T  26502589 ctacatttatacctttaccccaacatttgacacaaactacccaatttaccct 26502640  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 26590125 - 26590074
Alignment:
Q  18 ctacatttataccttcacccaaatatttgacataaactaccaaatttaccct 69  Q
    ||||||||||||||| |||| || |||||||| |||||||| ||||||||||    
T  26590125 ctacatttatacctttaccccaacatttgacacaaactacccaatttaccct 26590074  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 19365554 - 19365612
Alignment:
Q  18 ctacatttataccttcacccaaatatttgacataaactaccaaatttaccctatatata 76  Q
    ||||||||||||||| |||| || |||| ||||||| ||||||| ||||||| ||||||    
T  19365554 ctacatttatacctttaccccaacatttaacataaaataccaaaattaccctttatata 19365612  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 42148735 - 42148793
Alignment:
Q  18 ctacatttataccttcacccaaatatttgacataaactaccaaatttaccctatatata 76  Q
    |||||||||||| || |||| || |||||||| ||| ||||||||||||||| ||||||    
T  42148735 ctacatttatacgttgaccccaacatttgacacaaagtaccaaatttaccctttatata 42148793  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 33461247 - 33461305
Alignment:
Q  18 ctacatttataccttcacccaaatatttgacataaactaccaaatttaccctatatata 76  Q
    ||||||||||||||| |||| || |||||||| |||||| | |||||||||| ||||||    
T  33461247 ctacatttatacctttaccccaacatttgacacaaactatccaatttaccctctatata 33461305  T

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