View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_low_18 (Length: 336)
Name: NF15279_low_18
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_18 |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 32425784 - 32425449
Alignment:
| Q |
1 |
aaaagtgatgatttataagtgtaatatccaaggaaagccggttgtcactgcaacgcagatgttggagtcaatgatcaaatcacctaggccaaccagagct |
100 |
Q |
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| T |
32425784 |
aaaagtgatgatttataagtgtaatatccaaggaaagccggttgtcactgcaacgcagatgttggagtcaatgatcaaatcacctaggccaaccagagct |
32425685 |
T |
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| Q |
101 |
gaagctactgatgtcgcgaatgcagttctggatggcacagattgtgtcatgcttagtggtgaaactgctgctggagcttatccagaacttgctgttcgaa |
200 |
Q |
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| T |
32425684 |
gaagctactgatgtcgcgaatgcagttctggatggcacagattgtgtcatgcttagtggtgaaactgctgctggagcttatccagaacttgctgttcgaa |
32425585 |
T |
|
| Q |
201 |
ctatggctaaaatttgtgttgaagctgagagtaccatcaactatggagatgtatttaaaaggataatggagcactcaccagtaccgatgggcccattgga |
300 |
Q |
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| T |
32425584 |
ctatggctaaaatttgtgttgaagctgagagtaccatcaactatggagatgtatttaaaaggataatggagcactcaccagtaccgatgggcccattgga |
32425485 |
T |
|
| Q |
301 |
gagtctagcttcttctgcggttaaaatggcgaactc |
336 |
Q |
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| T |
32425484 |
gagtctagcttcttctgcggttaaaatggcaaactc |
32425449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 32419506 - 32419184
Alignment:
| Q |
1 |
aaaagtgatgatttataagtgtaatatccaaggaaagccggttgtcactgcaacgcagatgttggagtcaatgatcaaatcacctaggccaaccagagct |
100 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||| || ||||| || |||||||||||||||||||||||||| || |||||||||||||| |
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| T |
32419506 |
aaaagtgatgatttataagtgcaatatccaaggaaaaccggtcgttactgcgacccagatgttggagtcaatgatcaaatctccccggccaaccagagct |
32419407 |
T |
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| Q |
101 |
gaagctactgatgtcgcgaatgcagttctggatggcacagattgtgtcatgcttagtggtgaaactgctgctggagcttatccagaacttgctgttcgaa |
200 |
Q |
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| T |
32419406 |
gaagctactgatgttgcaaatgcagttctggatggaacagactgtgtcatgcttagtggtgaaactgctgctggagcttatccagaactcgctgttcgta |
32419307 |
T |
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| Q |
201 |
ctatggctaaaatttgtgttgaagctgagagtaccatcaactatggagatgtatttaaaaggataatggagcactcaccagtaccgatgggcccattgga |
300 |
Q |
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| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||| |
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| T |
32419306 |
caatggctaaaatatgtgttgaagctgagagcaccattgactatggagatgtattcaaaaggataatggagcactcaccagtacccatgagcccgttgga |
32419207 |
T |
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| Q |
301 |
gagtctagcttcttctgcggtta |
323 |
Q |
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|||||||||||||||||| |||| |
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| T |
32419206 |
gagtctagcttcttctgctgtta |
32419184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 2 - 336
Target Start/End: Complemental strand, 40596489 - 40596155
Alignment:
| Q |
2 |
aaagtgatgatttataagtgtaatatccaaggaaagccggttgtcactgcaacgcagatgttggagtcaatgatcaaatcacctaggccaaccagagctg |
101 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
40596489 |
aaagtgatgatttataagtgcaatatccaaggaaagcctgttgttactgcaacccagatgttggagtcaatgatcaaatctcccaggccaaccagagctg |
40596390 |
T |
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| Q |
102 |
aagctactgatgtcgcgaatgcagttctggatggcacagattgtgtcatgcttagtggtgaaactgctgctggagcttatccagaacttgctgttcgaac |
201 |
Q |
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||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40596389 |
aagctacagatgtcgccaatgcagttctggacggcacagactgtgtcatgcttagcggtgaaactgctgctggagcttatccagaacttgctgttcgaac |
40596290 |
T |
|
| Q |
202 |
tatggctaaaatttgtgttgaagctgagagtaccatcaactatggagatgtatttaaaaggataatggagcactcaccagtaccgatgggcccattggag |
301 |
Q |
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| T |
40596289 |
tatggctaaaatttgtgttgaagctgagagtaccattaactatggagatgtatttaaaaggataatggagcactcaccagtacccatgagcccattggag |
40596190 |
T |
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| Q |
302 |
agtctagcttcttctgcggttaaaatggcgaactc |
336 |
Q |
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| T |
40596189 |
agtctagcttcttctgcagttaaaatggccaactc |
40596155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 70903 - 71092
Alignment:
| Q |
6 |
tgatgatttataagtgtaatatccaaggaaagccggttgtcactgcaacgcagatgttggagtcaatgatcaaatcacctaggccaaccagagctgaagc |
105 |
Q |
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|||||||||||||||||||| | || ||||| || || ||||| || |||||| | || || ||||||||||| || |||||||| |||||||||| |
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| T |
70903 |
tgatgatttataagtgtaatcttgttggcaagcctgtggtgactgctactcagatgcttgaatccatgatcaaatctccccggccaacccgagctgaagc |
71002 |
T |
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| Q |
106 |
tactgatgtcgcgaatgcagttctggatggcacagattgtgtcatgcttagtggtgaaactgctgctggagcttatccagaacttgctgt |
195 |
Q |
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|||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||| |
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| T |
71003 |
aactgatgtagccaatgcagttcttgatggaacggattgcgtcatgcttagtggtgaaagtgctgctggagcttaccctgaacttgctgt |
71092 |
T |
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