View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15279_low_20 (Length: 311)
Name: NF15279_low_20
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_20 |
 | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 5596959 - 5596664
Alignment:
| Q |
1 |
atgttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacaca--gagaaccattcaggttt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5596959 |
atgttgtccgttgtctattactcttcctcagagaacataacatcaggaggttgccaaggtgtgttgatcataaattacacaaagagaaccattcaggttt |
5596860 |
T |
|
| Q |
99 |
ataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
5596859 |
ataaaagagatacactaacctcatttgaggatgtggattggcagcgcataacatcgaatctagaacctgctaacaaagtgaatgttatggttgtttttgg |
5596760 |
T |
|
| Q |
199 |
ggagggtttcactgttgagaagactacaatatctctcttgtatgataaaccgataaaagaagaggatgttaatgtatatggtgaggaagataataa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5596759 |
ggagggtttcactgttgagaagactacaatatctctcttgtatgataaaccaataaaagaagaggatgttaatgtatatggtgaggaagataataa |
5596664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 6761708 - 6762005
Alignment:
| Q |
1 |
atgttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacaca--gagaaccattcaggttt |
98 |
Q |
| |
|
||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| | || |||||||| | ||||||||||||||||| |
|
|
| T |
6761708 |
atgttgttcgttgtctattactcttcctcataaaacataacatcagaaggtttccaaggtgtgttaaacagaaattacataaagagaaccattcaggttt |
6761807 |
T |
|
| Q |
99 |
ataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgg |
198 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
6761808 |
ataaaagagatacactaatatcatttgaggatgaggattggcagagcataacatcaaatctagaacctggtaacaaagtgaagtttatggttgtttttgg |
6761907 |
T |
|
| Q |
199 |
ggagggtttcactgttgagaagactacaatatctctcttgtatgataaaccgataaaagaagaggatgttaatgtatatggtgaggaagataataatg |
296 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
6761908 |
ggagggtttcattgttgagaagactacagtatctctgttgtatgataaaccaatagaagaagaggatgttattgaatatggtgatgaagataataatg |
6762005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 6740466 - 6740753
Alignment:
| Q |
11 |
ttgtctattactcttc-ctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacaca--gagaaccattcaggtttataaaagag |
107 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6740466 |
ttgtctactactcttctctc-gagaacataacatcagaaggtctccaaggtgtgttgatcataaattacacaaagagaaccattcaggtttataaaagag |
6740564 |
T |
|
| Q |
108 |
atacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttggggagggttt |
207 |
Q |
| |
|
||||||||||||| ||||| |||||||||| |||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| || |
|
|
| T |
6740565 |
atacactaacctcgtttgaagatgtggatttgcagagtataacatcaaatctagaacctggtaacaaggtgaagattatggttgtttttggggagggatt |
6740664 |
T |
|
| Q |
208 |
cactgttgagaagactacaatatctctcttgtatgataaaccgataaaagaagaggatgttaatgtatatggtgaggaagataataatg |
296 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||| | | ||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
6740665 |
cattgttgagaagactacaacatctctcttgtatgataaaccaacagaagaagaggatgttattgtatatcgtgaggaagataataatg |
6740753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 6587300 - 6587053
Alignment:
| Q |
4 |
ttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacacaga--gaaccattcaggtttata |
101 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
6587300 |
ttgttcgttgtctattactcttcctcggaaaacataacatcagatagttgccaaggtgtgttgatcataaattacacaaaaagaaccattcaggtttata |
6587201 |
T |
|
| Q |
102 |
aaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgggga |
201 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | || ||| |||| |||||||| |
|
|
| T |
6587200 |
aaagagatacgctaacctcgtttgaggatgaggattggcagagcataacatctaatctagaacctggtaacaaagtggaggtaatggttgtatttgggga |
6587101 |
T |
|
| Q |
202 |
gggtttcactgttgagaagactacaatatctctcttgtatgataaacc |
249 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
6587100 |
gggtttcattgttgagaagactacaatatctctcttatatgatgaacc |
6587053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 6816580 - 6816811
Alignment:
| Q |
13 |
gtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacaca--gagaaccattcaggtttataaaagagata |
110 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6816580 |
gtctattactcttcctcggaaaacataatatcagaaggtttccaaggtgtgttaatcataaattacacaaagagaaccattcaggtttataaaagagata |
6816679 |
T |
|
| Q |
111 |
cactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttggggagggtttcac |
210 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
6816680 |
cactaatctcatttgatgatgaggattggcagagcataacatcaaatctagaacttggtaacaaagtgaagtttatggttgtttttggggagggtttcca |
6816779 |
T |
|
| Q |
211 |
tgttgagaagactacaatatctctcttgtatg |
242 |
Q |
| |
|
||||||||| |||||| |||||||||| |||| |
|
|
| T |
6816780 |
tgttgagaatactacagtatctctcttatatg |
6816811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 6729466 - 6729716
Alignment:
| Q |
1 |
atgttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacaca--gagaaccattcaggttt |
98 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
6729466 |
atgttgttcgttgtctattactcttccccagaaaacataacatcagaaggttgcaaaggtatgttaatcataaattacacaaagagaaccgttctggttt |
6729565 |
T |
|
| Q |
99 |
ataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgg |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
6729566 |
ataaaagagatacactaacctcctttgaggacgaggattggcagagcataacatcaaatctagaacctggtaacaaagtggaggttatggttgtttttgc |
6729665 |
T |
|
| Q |
199 |
ggagggtttcactgttgagaagactacaatatctctcttgtatgataaacc |
249 |
Q |
| |
|
| |||||||| |||| ||||||||||| |||||||||| |||||| |||| |
|
|
| T |
6729666 |
gaagggtttctttgttaagaagactacattatctctcttatatgatgaacc |
6729716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6544423 - 6544180
Alignment:
| Q |
1 |
atgttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacacagaga--accattcaggttt |
98 |
Q |
| |
|
||||||||||| |||||||||||| | | |||||||||||| ||||||||||||| |||||||| ||||| ||| ||||| ||| |||||||||| | |
|
|
| T |
6544423 |
atgttgtccgtcgtctattactctactccggagaacataacagcagaaggttgccatggtgtgttaatcattaatcacacaaagacaaccattcaggcct |
6544324 |
T |
|
| Q |
99 |
ataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgg |
198 |
Q |
| |
|
||||||||||||||| ||| || ||| |||||| |||||| ||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
6544323 |
ataaaagagatacaccaacttcctttaaggatgatgattggaagaacataacatcaaatctagaacctggtaacaaagtggaggttatgattgtttttgg |
6544224 |
T |
|
| Q |
199 |
ggagggtttcactgttgagaagactacaatatctctcttgtatg |
242 |
Q |
| |
|
|||||| |||| ||| |||||||| |||||||||||||| |||| |
|
|
| T |
6544223 |
ggagggattcattgtagagaagacaacaatatctctcttatatg |
6544180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6797705 - 6797931
Alignment:
| Q |
1 |
atgttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacacagagaa--ccattcaggttt |
98 |
Q |
| |
|
||||| ||||||||||||||||||||| | || | ||||||||||||||||||||| ||| |||| |||||||| |||||| |||| ||||||| | | |
|
|
| T |
6797705 |
atgttatccgttgtctattactcttccccggaaatcataacatcagaaggttgccatggtttgttaatcataaactacacaaagaaaaccattcaagcat |
6797804 |
T |
|
| Q |
99 |
ataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgg |
198 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||||||| | ||||||||| ||| |||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
6797805 |
ataaaagagatacactaacctcctttgatgatgaagattggcataccataacatcaaatgtagaacctggtaacaaagtggaggttatggttgtttttgg |
6797904 |
T |
|
| Q |
199 |
ggagggtttcactgttgagaagactac |
225 |
Q |
| |
|
|||||| |||| ||||||||||||||| |
|
|
| T |
6797905 |
ggagggattcattgttgagaagactac |
6797931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 6754452 - 6754690
Alignment:
| Q |
13 |
gtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacaca--gagaaccattcaggtttataaaagagata |
110 |
Q |
| |
|
||||||||||||| | | |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| | |
|
|
| T |
6754452 |
gtctattactctttcccggagaacataacatcggaaggttgccaaggtttgttgatcataaattacacaaagagaaccattcaggcctataaaagagaaa |
6754551 |
T |
|
| Q |
111 |
cactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttggggagggtttcac |
210 |
Q |
| |
|
| |||||||| |||| ||| ||||||||||| |||||| || |||||||||||||||||||| ||| | |||||| | |||| | ||| ||||||| |
|
|
| T |
6754552 |
ctctaacctcttttggtcatgaggattggcagaccataacgtcaaatctagaacctggtaacaatgtgcaggttatggtaattttggaggaaggtttcat |
6754651 |
T |
|
| Q |
211 |
tgttgagaagactacaatatctctcttgtatgataaacc |
249 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||| |||| |
|
|
| T |
6754652 |
tgttgacaagactacgatatctctcttatatgatgaacc |
6754690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 6652255 - 6652460
Alignment:
| Q |
1 |
atgttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacacagag--aaccattcaggttt |
98 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||| | |||| | |||||||| |||||||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
6652255 |
atgttgttcgtcgtctattactcttccccagaaagcatagcttcagaaggatgccaaggtgtgttgatcataaattacacaaaggcaaccattcaggcct |
6652354 |
T |
|
| Q |
99 |
ataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgg |
198 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||| ||||||||||||||||||||| |||||||| ||| |||||||||| | |||||| ||||||||| |
|
|
| T |
6652355 |
ataaaagagacacactaacctccttcgaggatgaggattggcagagcataacatcaaatctagagcctagtaacaaagtagaggttatggttgtttttga |
6652454 |
T |
|
| Q |
199 |
ggaggg |
204 |
Q |
| |
|
|||||| |
|
|
| T |
6652455 |
ggaggg |
6652460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 6838638 - 6838863
Alignment:
| Q |
11 |
ttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacaca--gagaaccattcaggtttataaaagaga |
108 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||||||| || |||||||| |||||||||||||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
6838638 |
ttgtctattactcttccccggagaacatagcatcagaagggtgtcaaggtgtattgatcataaattacacaaagagaatcattcaggtttacaaaagaga |
6838737 |
T |
|
| Q |
109 |
tacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttggggagggtttc |
208 |
Q |
| |
|
||| |||||||| |||| ||| |||||||| || | |||| || | |||||||||||||||||||||| | |||||| ||||||| ||||| |||||| |
|
|
| T |
6838738 |
tactctaacctcttttggccatgaggattggcggaccgtaacgtcaattctagaacctggtaacaaagtggaggttatggttgttttaggggaaggtttc |
6838837 |
T |
|
| Q |
209 |
actgttgagaagactacaatatctct |
234 |
Q |
| |
|
| || ||| ||||||||||||||||| |
|
|
| T |
6838838 |
attgctgacaagactacaatatctct |
6838863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6531383 - 6531140
Alignment:
| Q |
1 |
atgttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacacagaga--accattcaggttt |
98 |
Q |
| |
|
||||||| ||| |||||||||||| | | |||||||||||| ||||||||| ||| |||||||| ||||| ||| ||||| ||| |||||||||| | |
|
|
| T |
6531383 |
atgttgttcgtcgtctattactctactccggagaacataacagcagaaggttaccatggtgtgttaatcattaatcacacaaagacaaccattcaggcct |
6531284 |
T |
|
| Q |
99 |
ataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgg |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||| ||||| ||| ||||||||||||||||| ||||| | ||| || |||||||||| |
|
|
| T |
6531283 |
ataaaagagatacactaacctcctttgaggatgaggattggcagaacataaaatcaaatctagaacctggtaatgaagtggaggttgtgcttgtttttgg |
6531184 |
T |
|
| Q |
199 |
ggagggtttcactgttgagaagactacaatatctctcttgtatg |
242 |
Q |
| |
|
||||| |||| ||| |||||||| ||||||| |||||| |||| |
|
|
| T |
6531183 |
agagggattcattgtggagaagacaacaatatatctcttatatg |
6531140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 6497518 - 6497268
Alignment:
| Q |
1 |
atgttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacacagaga--accattcaggttt |
98 |
Q |
| |
|
||||||| || || ||||||||| || | || |||||||||||||||||||||||| | ||||||||||||||| ||||| ||| |||||||| | | |
|
|
| T |
6497518 |
atgttgttcgctgcctattactcatcaccggacaacataacatcagaaggttgccaaagcgtgttgatcataaatcacacaaagacaaccattcatgcct |
6497419 |
T |
|
| Q |
99 |
ataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgg |
198 |
Q |
| |
|
||||||| || ||||||| ||| |||| ||| ||||||| ||||||||||||| ||||||||| |||||||||||||| | ||||||||||||||||| |
|
|
| T |
6497418 |
ataaaagtgaaacactaaactcttttggccatgaggattggaagagcataacatcaaatctagaatctggtaacaaagtggaagttatgattgtttttgg |
6497319 |
T |
|
| Q |
199 |
ggagggtttcactgttgagaagactacaatatctctcttgtatgataaacc |
249 |
Q |
| |
|
|||||| |||| ||| |||||||| | | |||||||||| |||||| |||| |
|
|
| T |
6497318 |
ggagggattcattgtagagaagacaaaattatctctcttatatgatcaacc |
6497268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 6620512 - 6620262
Alignment:
| Q |
1 |
atgttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacacagaga--accattcaggttt |
98 |
Q |
| |
|
||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| | |||||||| | |
|
|
| T |
6620512 |
atgttgtccgtcatttattactcttcacaggagaacataacatcagaaggttgccaaggtgtgttgatcattaatcacacaaagacaaacattcaggcct |
6620413 |
T |
|
| Q |
99 |
ataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgg |
198 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| ||| ||| ||| | ||||||| | ||||||||||||||||| |||| | |||||| |||||||| |
|
|
| T |
6620412 |
ataaaagagatacattagcctcctttgaggatgaggactggaagaacttaacatcaagtctagaacctggtaacacagtggaggttatggctgtttttgc |
6620313 |
T |
|
| Q |
199 |
ggagggtttcactgttgagaagactacaatatctctcttgtatgataaacc |
249 |
Q |
| |
|
|||||| |||| ||| || || || ||| |||||||||| |||||| |||| |
|
|
| T |
6620312 |
ggagggattcaatgtagaaaaaacaacagtatctctcttatatgatgaacc |
6620262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 6676853 - 6677017
Alignment:
| Q |
85 |
aaccattcaggtttataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgtt |
184 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| |||||| || |||||||| |||||||||||| ||||| |||||||||||||| ||| | ||| |
|
|
| T |
6676853 |
aaccattcaactctataaaagagatacactaacctcctttgagattgaggattggcggagcataacatcaaatcttgaacctggtaacaaggtggaggtt |
6676952 |
T |
|
| Q |
185 |
atgattgtttttggggagggtttcactgttgagaagactacaatatctctcttgtatgataaacc |
249 |
Q |
| |
|
|| |||| |||||||| || |||| |||||||||||| ||| ||||||| || |||||| |||| |
|
|
| T |
6676953 |
attgttgtgtttggggatggattcattgttgagaagacaacattatctcttttatatgatgaacc |
6677017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 6759285 - 6759410
Alignment:
| Q |
119 |
tcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttggggagggtttcactgttgaga |
218 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||| || || |||||||||||||||||||| | |||||| |||||||| || ||||||||| |||||||| |
|
|
| T |
6759285 |
tcatttggggatgatgattgggagagcgtaacgtcaaacctagaacctggtaacaaagtcgaggttatggttgtttttcggcagggtttcattgttgaga |
6759384 |
T |
|
| Q |
219 |
agactacaatatctctcttgtatgat |
244 |
Q |
| |
|
||||| || |||||||||| |||||| |
|
|
| T |
6759385 |
agactgcagtatctctcttatatgat |
6759410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 6823666 - 6823730
Alignment:
| Q |
13 |
gtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaatta |
77 |
Q |
| |
|
|||||| ||||| |||| || ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
6823666 |
gtctatcactctccctcggaaaacataacatctgaaggttgccaaggtgtgttgatcattaatta |
6823730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 7253 - 7022
Alignment:
| Q |
13 |
gtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacaca--gagaaccattcaggtttataaaagagata |
110 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7253 |
gtctattactcttcctcggaaaacataatatcagaaggtttccaaggtgtgttaatcataaattacacaaagagaaccattcaggtttataaaagagata |
7154 |
T |
|
| Q |
111 |
cactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttggggagggtttcac |
210 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
7153 |
cactaatctcatttgatgatgaggattggcagagcataacatcaaatctagaacttggtaacaaagtgaagtttatggttgtttttggggagggtttcca |
7054 |
T |
|
| Q |
211 |
tgttgagaagactacaatatctctcttgtatg |
242 |
Q |
| |
|
||||||||| |||||| |||||||||| |||| |
|
|
| T |
7053 |
tgttgagaatactacagtatctctcttatatg |
7022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 148 - 296
Target Start/End: Complemental strand, 17207 - 17059
Alignment:
| Q |
148 |
aacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttggggagggtttcactgttgagaagactacaatatctctcttgtatgataaa |
247 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17207 |
aacatcaaatctagaacctggtaacaaggtgaagattatggttgtttttggggagggattcattgttgagaagactacaacatctctcttgtatgataaa |
17108 |
T |
|
| Q |
248 |
ccgataaaagaagaggatgttaatgtatatggtgaggaagataataatg |
296 |
Q |
| |
|
|| | | ||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
17107 |
ccaacagaagaagaggatgttattgtatatcgtgaggaagataataatg |
17059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 7858 - 8108
Alignment:
| Q |
1 |
atgttgtccgttgtctattactcttcctcagagaacataacatcagaaggttgccaaggtgtgttgatcataaattacacagag--aaccattcaggttt |
98 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||| | |||| | |||||||| |||||||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
7858 |
atgttgttcgtcgtctattactcttccccagaaagcatagcttcagaaggatgccaaggtgtgttgatcataaattacacaaaggcaaccattcaggcct |
7957 |
T |
|
| Q |
99 |
ataaaagagatacactaacctcatttgaggatgtggattggcagagcataacatcgaatctagaacctggtaacaaagtgaatgttatgattgtttttgg |
198 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| ||| ||| ||| | ||||||| | ||||||||||||||||| |||| | |||||| |||||||| |
|
|
| T |
7958 |
ataaaagagatacattagcctcctttgaggatgaggactggaagaacttaacatcaagtctagaacctggtaacacagtggaggttatggctgtttttgc |
8057 |
T |
|
| Q |
199 |
ggagggtttcactgttgagaagactacaatatctctcttgtatgataaacc |
249 |
Q |
| |
|
|||||| |||| ||| || || || ||| |||||||||| |||||| |||| |
|
|
| T |
8058 |
ggagggattcaatgtagaaaaaacaacagtatctctcttatatgatgaacc |
8108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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