View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_low_21 (Length: 294)
Name: NF15279_low_21
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 40718439 - 40718710
Alignment:
| Q |
6 |
aggagcacagagtgttacatcataaatttaaatttaatgtgatagcaaattttccctcatttagaagcctttggagccttgaagaaatcatagctatctt |
105 |
Q |
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| T |
40718439 |
aggaccacaaagtgttacatcataaatttaaatttaatgtgatagcaagttttccctcatttagaagcctttggagccttgaagaaatcatagctatctt |
40718538 |
T |
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| Q |
106 |
atatctatctttgtttgtggtacaactacaagagtttcaagcttttaaggaactctatttaccccacaccttcatgctttgccacaatttgatgcctata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40718539 |
atatctatctttgtttgtggtacaactacaagagtttcaagcttttaaggaactctatttaccccacaccttcatgctttgccacaatttgatgcctata |
40718638 |
T |
|
| Q |
206 |
atggaagaataaatcaaagtttccaaagtcgtatgaatgacatatataaatcacattcatgttccctcaact |
277 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40718639 |
atggaagaataaatcaaagtctccaaagtcgtatgaatgacatatataaatcacattcatgttccctcaact |
40718710 |
T |
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