View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_low_22 (Length: 289)
Name: NF15279_low_22
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 32425472 - 32425221
Alignment:
| Q |
20 |
ttctgcggttaaaatggcgaactcagctaaagcagcacttatattggttttaactagaggagggagtactgcaaaattagtggctaaatatagggcaggc |
119 |
Q |
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| T |
32425472 |
ttctgcggttaaaatggcaaactcagctaaagcagcacttatattggttttaactagaggagggagtactgcaaaattagtggctaaatatagggcaggc |
32425373 |
T |
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| Q |
120 |
atgccaattctttctgttgtcgttcctgagattaagaccgatacctttgattggtcctgcagtgatgaggtccctgccagacatagcttgatattccgag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425372 |
atgccaattctttctgttgtcgttcctgagattaagaccgatacctttgattggtcctgcagtgatgaggtccctgccagacatagcttgatattccgag |
32425273 |
T |
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| Q |
220 |
gattgattccagtactgagtgcgggttctgctagagcttctcatgcagaaac |
271 |
Q |
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| T |
32425272 |
gattgattccagtactgagtgcgggttctgctagagcttctcatgcagaaac |
32425221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 39 - 271
Target Start/End: Complemental strand, 32419175 - 32418943
Alignment:
| Q |
39 |
aactcagctaaagcagcacttatattggttttaactagaggagggagtactgcaaaattagtggctaaatatagggcaggcatgccaattctttctgttg |
138 |
Q |
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| T |
32419175 |
aactctgctagagcagctctcatattggttttaactagaggagggactactgcaaaattggtggctaaatacaggccaggcacgccaattctttctgttg |
32419076 |
T |
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| Q |
139 |
tcgttcctgagattaagaccgatacctttgattggtcctgcagtgatgaggtccctgccagacatagcttgatattccgaggattgattccagtactgag |
238 |
Q |
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| T |
32419075 |
ttgttcctgagctaacgactgatacctttgattggtcatgcagtgatgagtcccctgcgagacatagcttgatattccgaggattgattccaatattaag |
32418976 |
T |
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| Q |
239 |
tgcgggttctgctagagcttctcatgcagaaac |
271 |
Q |
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| T |
32418975 |
tgcagcttctgctagagcttctcatgcagaaac |
32418943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 40596178 - 40595927
Alignment:
| Q |
20 |
ttctgcggttaaaatggcgaactcagctaaagcagcacttatattggttttaactagaggagggagtactgcaaaattagtggctaaatatagggcaggc |
119 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
40596178 |
ttctgcagttaaaatggccaactcagctaaagcagcacttatattggttttaactagaggagggagtactgcaaaattagtggctaaatacagggctggc |
40596079 |
T |
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| Q |
120 |
atgccaattctttctgttgtcgttcctgagattaagaccgatacctttgattggtcctgcagtgatgaggtccctgccagacatagcttgatattccgag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40596078 |
atgccaattctttctgttgtcgttcctgagattaagactgacacttttgattggtcctgcagtgatgaggcccctgccagacatagcttgatattccgag |
40595979 |
T |
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| Q |
220 |
gattgattccagtactgagtgcgggttctgctagagcttctcatgcagaaac |
271 |
Q |
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|||||||||||||||| || || |||||||||||||||||||| ||||||| |
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| T |
40595978 |
gattgattccagtactcagcgcaggttctgctagagcttctcacacagaaac |
40595927 |
T |
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