View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_low_25 (Length: 281)
Name: NF15279_low_25
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 43 - 274
Target Start/End: Original strand, 9102042 - 9102273
Alignment:
| Q |
43 |
gttgaacaaccattgatgaagatgaattcaatgtgaatgaaaatatacctcgagaaaacttttcctcatgtttattgcacttctcacagaaatacatgct |
142 |
Q |
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| T |
9102042 |
gttgaacaaccattgatgaagatgaatacaatgtgaatgaaaatatacctcgggaaaacttttcctcatgtttattgcacttctcacagaaatacatgct |
9102141 |
T |
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| Q |
143 |
taaatcgggataaactagggtttattagttgattacagcgctaatttgcattttaattacagaatgtattttaattaagtgtttattagttgattttctt |
242 |
Q |
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| T |
9102142 |
taaatcgggataaactagggtttattagttgattacagcgctaatttgcattttaattacagaatgtattttacttaagtgtttattagttgattttctt |
9102241 |
T |
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| Q |
243 |
gcccaaaatttgttatcgatatttctgtgctg |
274 |
Q |
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| T |
9102242 |
gcccaaaatttgttatcgatatttctgtgctg |
9102273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9101542 - 9101585
Alignment:
| Q |
1 |
tgacagttaaattaaaatgaaagaccagtataaatgaaataggt |
44 |
Q |
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| T |
9101542 |
tgacagttaaattaaaatgaaagaccagtataaatgaaataggt |
9101585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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