View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15279_low_26 (Length: 266)
Name: NF15279_low_26
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 27508540 - 27508692
Alignment:
| Q |
95 |
atcaaggaagagattcagaacaaaattcactcaggaacagaaagagaaattgctggcttttgctgaagaacatggttggagaattcagaaacaagatgaa |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27508540 |
atcaaggaagagattcagaacaaaattcactcaggaacagaaagagaaattgctggcttttgcagaagaacatggttggagaattcagaaacaagatgaa |
27508639 |
T |
|
| Q |
195 |
gctgctatagaacagttttgtgctgagaattgtatcaagagaaatgttcttaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27508640 |
gctgctatagaacagttttgtgctgagaattgtatcaagagaaatgttcttaa |
27508692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 27508459 - 27508498
Alignment:
| Q |
14 |
gagcagagatgatgatgatatgtcaaaccctagcagtagc |
53 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27508459 |
gagcagagaagatgatgatatgtcaaaccctagcagtagc |
27508498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 46300830 - 46300694
Alignment:
| Q |
111 |
agaacaaaattcactcaggaacagaaagagaaattgctggcttttgctgaagaacatggttggagaattcagaaacaagatgaagctgctatagaacagt |
210 |
Q |
| |
|
|||||||||||||| |||||||| || || || |||| || ||||| || || ||| |||||||||||||| ||||||||| ||| || ||||| | |
|
|
| T |
46300830 |
agaacaaaattcacgcaggaacaaaaggataagatgcttgcatttgcggagaaaattgggtggagaattcagaaggaagatgaaggtgcaattgaacaat |
46300731 |
T |
|
| Q |
211 |
tttgtgctgagaattgtatcaagagaaatgttcttaa |
247 |
Q |
| |
|
| ||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
46300730 |
tctgtgctgagaattttatcaagagacatgtgcttaa |
46300694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University