View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_low_30 (Length: 239)
Name: NF15279_low_30
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 13924135 - 13923930
Alignment:
| Q |
13 |
caaaggttaaaatcatgcaaagttgtgggagcatattgctaaacacttaccactcaatatcttaacaataaaagtttatatattcatactacatggcagt |
112 |
Q |
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| T |
13924135 |
caaaggttaaaatcatgcaaagttgtgggagcattttgctaaacattgaccactcaatatcttaacaataaaagtttatatattcatactacatggcagt |
13924036 |
T |
|
| Q |
113 |
atacaaattccaaatcatgtgtctttgtattggtacataatttataaacatttctaaacccacgacgcagaccctaaaatgtttgatcataattaactag |
212 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
13924035 |
atacaaattccaaatcatgtgtctttgcattggtacataatttataaacatttctaaaccc---acgcagaccctaaaaaatttgatcataattaactag |
13923939 |
T |
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| Q |
213 |
gcttgtgta |
221 |
Q |
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||||||||| |
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| T |
13923938 |
gcttgtgta |
13923930 |
T |
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