View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15279_low_33 (Length: 231)
Name: NF15279_low_33
Description: NF15279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15279_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 52184365 - 52184165
Alignment:
| Q |
19 |
agtgtatttaatgatatgttaaattatttatttaaagacgttattatgaagacatttaagtaccagaacataaaaaatattagactcaaacctaaaaata |
118 |
Q |
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| T |
52184365 |
agtgtatttaatgatatgttaaattatttatttaaagacgttat---gaagacatttaagtaccagaatataaaaaatattagactcaaacctaaaaata |
52184269 |
T |
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| Q |
119 |
aatctattgcagacaacaggtaagacctaagatttgagnnnnnnnaccagaccaaatttcaaccttataaaacctagatcgcgcaatctaacaaactagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52184268 |
aatctattgcagacaacaggtaagacctaagatttgagtttttttaccagaccaaatttcaaccttataaaacctagatcgcgcaatctaacaaactagt |
52184169 |
T |
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| Q |
219 |
ataa |
222 |
Q |
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|||| |
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| T |
52184168 |
ataa |
52184165 |
T |
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